Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 0.0e+00 1511.1 768 100.0
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1226.8 773 80.5
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1216.4 777 79.3
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1212.6 747 82.6
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1181.4 781 77.7
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1179.9 783 77.3
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1171.4 777 77.6
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1163.7 776 76.5
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1161.4 786 74.9
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 0.0e+00 1159.1 772 76.8
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1158.7 785 77.6
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 0.0e+00 1157.1 773 77.0
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 0.0e+00 1156.0 767 77.2
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1142.5 775 75.6
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1133.2 774 74.4
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1128.2 788 73.2
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1124.0 771 74.8
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 0.0e+00 1123.2 784 74.6
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1122.5 772 74.0
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1119.8 776 74.0
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 0.0e+00 1117.4 779 75.4
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1109.0 776 74.0
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 0.0e+00 1106.3 768 75.1
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1103.2 783 73.3
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 788 73.2
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 0.0e+00 1098.6 770 73.4
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 0.0e+00 1097.8 782 73.9
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1095.1 787 71.2
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1093.2 781 73.2
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1092.8 787 71.0
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1089.7 781 72.6
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1088.9 775 72.9
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 0.0e+00 1088.9 777 73.1
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 0.0e+00 1088.9 781 72.6
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1087.4 780 72.4
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1087.4 782 71.9
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1082.4 786 72.4
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1082.4 773 71.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 0.0e+00 1080.5 779 71.8
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1079.3 813 70.5
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 0.0e+00 1078.9 774 71.3
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 0.0e+00 1077.0 771 72.2
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1075.1 775 70.8
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 0.0e+00 1075.1 785 72.1
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 3.7e-311 1071.2 779 70.7
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 7.9e-311 1070.1 778 71.1
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 2.3e-310 1068.5 783 71.5
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 5.2e-310 1067.4 777 71.2
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 8.8e-310 1066.6 783 71.4
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.2e-309 1066.2 798 70.1
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 1.2e-309 1066.2 780 71.9
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.2e-308 1062.0 787 69.3
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 2.2e-308 1062.0 776 70.6
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 9.2e-307 1056.6 772 69.2
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 3.8e-305 1051.2 787 71.9
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.6e-305 1050.0 770 71.7
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 1.9e-304 1048.9 782 70.7
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 3.3e-304 1048.1 784 71.8
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 9.5e-304 1046.6 773 70.5
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 6.0e-298 1027.3 775 68.8
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 8.6e-297 1023.5 768 69.9
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 3.4e-293 1011.5 779 67.9
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 4.1e-291 1004.6 775 68.8
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.2e-290 1003.0 781 68.4
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 7.8e-290 1000.3 796 68.2
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 4.4e-285 984.6 773 65.7
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 4.4e-285 984.6 773 65.6
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 7.1e-283 977.2 773 64.9
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 1.2e-282 976.5 773 65.1
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 6.6e-281 970.7 930 58.0
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 4.3e-280 968.0 773 64.9
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 1.2e-279 966.5 775 64.4
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 3.6e-279 964.9 775 64.1
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 3.6e-279 964.9 775 64.1
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 4.9e-276 954.5 799 62.6
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 5.4e-275 951.0 778 63.9
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 4.6e-274 948.0 773 63.0
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.9e-272 942.6 776 63.3
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 1.9e-272 942.6 771 64.7
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 5.3e-270 934.5 779 64.3
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.0e-269 932.6 773 66.2
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 2.6e-269 932.2 537 85.1
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 1.7e-268 929.5 533 85.2
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 8.4e-268 927.2 700 69.6
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 3.9e-265 918.3 747 63.2
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 1.1e-259 900.2 773 62.9
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 9.3e-259 897.1 773 62.5
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.1e-258 896.0 658 72.5
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 1.6e-255 886.3 533 81.4
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.8e-254 882.9 701 66.0
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 4.2e-251 871.7 784 60.8
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 7.9e-250 867.5 771 61.0
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 3.0e-241 839.0 779 59.6
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 2.2e-239 832.8 766 59.1
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 6.7e-233 811.2 655 65.0
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 5.1e-225 785.0 787 55.1
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 1.3e-223 780.4 830 50.5
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.0e-217 760.8 857 49.9
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 1.1e-203 714.1 773 50.1
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 1.9e-203 713.4 763 52.9
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 2.3e-193 679.9 771 51.9
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 8.9e-193 677.9 766 50.1
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.0e-192 676.8 770 50.3
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.2e-189 667.5 774 49.5
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.9e-189 665.2 774 49.4
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 5.6e-187 658.7 814 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.6e-186 657.1 745 48.7
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 4.1e-174 615.9 456 71.9
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 9.9e-168 594.7 357 81.0
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 6.2e-130 469.2 410 58.3
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 8.7e-124 448.7 464 55.4
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.0e-108 398.7 229 83.0
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 3.0e-108 397.1 251 78.1
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 2.4e-89 334.3 190 86.3
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 1.1e-86 325.5 685 32.6
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 8.0e-85 319.3 360 55.8
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 5.2e-84 316.6 733 30.7
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 3.0e-76 290.8 760 30.1
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 8.6e-71 272.7 276 57.6
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 1.2e-67 262.3 237 63.3
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 2.6e-67 261.2 237 62.9
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.2e-61 242.3 137 82.5
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.6e-51 208.0 175 62.3
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.9e-50 203.8 129 80.6
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 1.3e-47 195.7 217 57.6
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 2.5e-46 191.4 109 79.8
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 6.8e-44 183.3 142 67.6
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.1e-41 176.0 176 60.8
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.4e-35 154.1 165 59.4
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 7.4e-30 136.7 95 72.6
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.1e-29 135.2 163 47.2
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 9.3e-25 119.8 126 61.1
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.6e-19 101.7 80 65.0
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 8.4e-18 96.7 62 72.6
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.2e-16 92.8 66 66.7
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 1.0e-15 89.7 163 39.9
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.3e-15 89.4 517 20.3
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 3.3e-14 84.7 517 22.6
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 4.2e-09 67.8 536 20.1
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 4.2e-09 67.8 519 20.0
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 7.2e-09 67.0 407 22.6
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 1.6e-08 65.9 59 52.5
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 2.7e-08 65.1 506 20.6
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 7.9e-08 63.5 346 22.5
EL10Ac8g19790 Beta vulgaris HOM05D002279 ORTHO05D002644 1.3e-07 62.8 456 20.0
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.8e-07 62.4 60 50.0
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 1.8e-07 62.4 508 21.1
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 3.0e-07 61.6 510 19.0
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 5.1e-07 60.8 106 38.7
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 8.7e-07 60.1 78 46.2
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 1.1e-06 59.7 78 44.9
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 1.9e-06 58.9 109 37.6
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 1.9e-06 58.9 109 37.6


User provided reference genes

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