Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 3761.5 1927 100.0
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2711.8 2021 71.1
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2483.8 2017 65.2
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2397.1 2025 63.1
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2381.3 2030 62.6
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 2340.8 1985 62.6
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2286.9 2025 60.7
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2280.0 2001 61.1
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2276.5 2000 60.5
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2269.6 2078 58.6
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 2229.5 2068 58.2
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2228.8 1992 58.7
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2214.5 1995 59.1
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2209.1 1999 59.0
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2179.8 2001 57.8
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2174.1 2006 57.7
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2170.2 1996 59.0
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2163.3 2006 57.4
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2145.9 1994 57.3
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 2134.0 2016 57.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2126.7 2000 57.8
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 2125.1 1994 57.9
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2120.5 1996 57.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 2114.3 2014 57.7
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2114.3 1995 57.8
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 2112.0 1987 57.4
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2106.3 2002 56.7
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2080.4 1990 56.2
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2071.2 2107 54.0
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 2054.3 1986 57.2
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 2044.6 2208 52.3
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 2032.3 2020 54.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2016.5 2018 55.0
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 2006.5 2018 54.7
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1993.8 2009 55.2
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1978.4 1991 54.1
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1974.9 1995 55.4
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1974.1 2002 54.7
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1969.9 2007 54.5
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1965.7 1996 55.1
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1959.9 2216 51.2
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1949.5 1990 54.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1947.9 1808 57.6
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1934.1 1998 53.6
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1927.1 2000 52.5
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1926.8 2009 53.3
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1924.8 2035 52.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1914.0 1996 53.4
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1911.3 1988 53.3
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1905.2 1991 52.5
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1903.6 2083 51.5
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1893.6 2001 52.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1889.4 1998 51.6
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1885.5 2002 51.6
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1866.3 1853 54.6
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1865.9 2097 50.2
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1857.8 2092 50.5
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1845.9 1998 50.4
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1834.3 2001 50.7
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1824.7 2001 50.1
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1821.2 1994 49.9
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1818.1 2038 50.0
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1813.5 2000 50.0
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1813.1 2006 50.1
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1812.3 2003 49.9
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1805.8 2000 49.9
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1802.7 2003 49.8
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1792.7 1990 49.3
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1788.9 1967 50.5
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1745.7 1989 50.0
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1709.9 2049 47.7
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1708.3 2025 48.9
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1650.6 1754 51.4
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1649.0 1977 49.6
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1629.0 1973 47.2
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1586.2 2023 45.1
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1547.7 1262 66.3
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1543.5 1385 60.8
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1452.2 2345 41.7
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1394.4 1391 55.1
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1393.3 1490 52.8
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1302.7 1374 54.5
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1206.4 2003 39.3
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 0.0e+00 1125.5 1218 51.7
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1085.1 1242 49.5
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.9e-300 1036.9 1090 52.8
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.6e-283 980.7 2094 31.4
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 4.2e-276 956.1 2110 31.7
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.4e-255 887.9 815 58.5
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.8e-251 873.6 1019 49.2
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.6e-251 873.2 627 71.1
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.5e-241 841.3 2108 29.0
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 3.2e-239 833.6 661 64.1
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 1.4e-223 781.6 728 58.1
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 9.0e-202 709.1 746 52.1
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 1.1e-199 702.2 1307 37.9
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.7e-196 689.9 1498 31.4
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.3e-189 667.9 831 44.0
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.6e-182 644.0 738 48.0
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 6.3e-179 633.3 742 48.2
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.6e-174 618.6 500 63.0
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 1.4e-157 562.4 730 43.0
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.0e-152 543.9 558 54.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 2.7e-150 538.1 791 43.7
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.1e-143 516.2 2216 23.8
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 8.0e-134 483.4 774 39.3
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 2.6e-124 451.8 526 48.1
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 3.2e-122 444.9 360 60.6
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 3.6e-118 431.4 420 58.1
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 2.3e-112 412.1 384 56.8
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 1.1e-111 409.8 613 40.5
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.4e-106 392.1 714 35.4
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 9.3e-106 390.2 628 38.5
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 5.1e-88 331.3 636 34.3
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.4e-77 295.8 204 73.0
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.4e-74 286.6 256 56.6
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 4.1e-53 215.3 480 30.0
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 1.0e-51 210.7 214 52.8
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 1.8e-48 199.9 205 53.7
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.3e-46 193.7 400 34.2
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.9e-44 184.9 137 65.0
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 8.0e-41 174.5 163 56.4
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.0e-40 172.2 100 80.0
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.8e-40 171.4 609 25.3
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 2.0e-36 159.8 133 59.4
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 5.9e-36 158.3 334 36.2
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.2e-35 156.4 143 58.7
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 8.8e-32 144.4 667 23.8
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 6.3e-30 138.3 99 69.7
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.6e-26 125.2 148 48.0
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 7.3e-26 124.8 608 23.7
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.6e-23 116.3 90 65.6
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 3.4e-23 115.9 125 48.8
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.7e-23 115.2 132 46.2
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.7e-22 113.6 92 57.6
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 8.3e-22 111.3 139 48.2
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 8.3e-22 111.3 125 47.2
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 3.2e-21 109.4 90 56.7
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 3.2e-21 109.4 151 42.4
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.5e-18 100.5 100 48.0
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 9.5e-18 97.8 96 49.0
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.2e-17 97.4 157 38.2
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.6e-17 97.1 106 50.9
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 8.0e-17 94.7 64 70.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.0e-16 94.4 157 36.3
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 4.0e-16 92.4 59 67.8
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 5.2e-16 92.0 86 50.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.6e-15 89.7 113 46.9
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 8.3e-14 84.7 80 53.8
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.4e-13 84.0 234 29.1
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 7.0e-13 81.6 80 53.8
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.2e-12 80.9 159 32.1
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 2.7e-12 79.7 68 57.4
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 5.6e-10 72.0 124 42.7
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 5.2e-08 65.5 66 51.5
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 1.2e-07 64.3 67 53.7
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 2.0e-07 63.5 106 38.7
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 7.5e-07 61.6 113 39.8
AT4G10843 Arabidopsis thaliana HOM05D004110 ORTHO05D038727 9.8e-07 61.2 95 38.9
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 9.8e-07 61.2 52 57.7
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 1.3e-06 60.8 61 49.2
HPP92_005014 Vanilla planifolia HOM05D004110 ORTHO05D004810 6.4e-06 58.5 77 40.3


User provided reference genes

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