Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 1.8e-281 971.8 465 100.0
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.1e-206 723.4 462 73.4
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 1.5e-206 723.0 463 72.4
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.7e-205 718.8 465 69.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.5e-195 686.4 463 68.5
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 5.5e-190 667.9 408 75.5
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 5.2e-188 661.4 466 66.3
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 3.5e-184 648.7 458 64.4
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 9.5e-182 640.6 458 62.7
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.2e-179 633.6 458 62.9
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 9.8e-179 630.6 458 62.7
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 1.1e-177 627.1 462 63.6
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.9e-177 626.3 462 64.1
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.2e-176 623.6 465 62.6
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.6e-176 623.2 462 60.6
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.7e-176 622.5 466 62.2
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 1.3e-175 620.2 464 63.1
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 3.9e-175 618.6 462 61.7
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 5.6e-174 614.8 467 62.5
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 2.1e-173 612.8 463 61.6
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.1e-172 610.5 467 62.1
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.5e-171 606.7 465 62.2
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 2.6e-171 605.9 476 60.5
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 7.5e-171 604.4 462 60.8
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.1e-169 600.5 462 60.4
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.4e-169 599.4 543 54.5
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 4.1e-169 598.6 462 62.6
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 4.7e-165 585.1 463 59.0
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 1.4e-164 583.6 463 58.7
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 6.8e-164 581.3 465 58.3
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.7e-159 566.6 424 61.6
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.3e-159 566.2 480 56.7
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 6.6e-159 564.7 459 57.3
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.2e-157 560.5 465 55.9
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 1.5e-155 553.5 513 51.5
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 1.5e-155 553.5 445 60.0
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 7.6e-155 551.2 464 55.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 1.4e-153 547.0 461 54.7
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 2.4e-153 546.2 463 55.5
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 1.6e-152 543.5 464 56.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.7e-151 540.0 463 55.9
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 5.6e-150 535.0 463 54.9
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 7.3e-150 534.6 460 53.5
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.8e-148 530.0 462 56.3
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 1.9e-145 520.0 376 65.2
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 4.3e-142 508.8 460 55.7
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.9e-140 501.5 453 53.4
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 3.8e-138 495.7 466 50.6
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 8.4e-138 494.6 457 53.8
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 2.8e-133 479.6 467 51.0
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 3.1e-132 476.1 464 50.2
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.5e-131 472.2 467 50.5
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.5e-130 468.4 419 53.5
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 3.5e-128 462.6 381 57.7
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.3e-127 460.7 468 48.1
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 5.7e-126 455.3 460 50.0
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.6e-125 453.8 460 49.8
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.1e-125 453.4 460 49.8
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 2.4e-124 449.9 463 49.5
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.0e-123 446.8 459 51.2
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 7.6e-123 444.9 459 50.8
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 3.8e-122 442.6 472 49.6
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.1e-120 436.8 465 47.5
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 2.1e-120 436.8 462 47.0
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.7e-120 436.4 378 55.0
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 2.7e-120 436.4 465 47.3
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.7e-119 431.8 465 47.1
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 1.9e-118 430.3 461 45.3
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.5e-118 429.9 486 44.7
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.6e-117 427.2 530 45.7
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 9.0e-116 421.4 385 54.8
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.4e-115 419.5 466 46.1
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.9e-114 416.4 409 49.1
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.8e-114 416.0 500 43.6
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 1.4e-113 414.1 479 44.5
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 4.2e-113 412.5 471 46.1
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.6e-112 410.6 493 43.8
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 1.0e-111 407.9 465 44.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.4e-111 407.5 444 47.1
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.5e-110 403.3 265 69.4
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 9.7e-110 401.4 464 44.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.7e-109 400.6 464 43.8
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.3e-109 398.7 474 44.5
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 6.3e-109 398.7 474 44.5
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 8.2e-109 398.3 446 44.8
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.4e-108 396.7 467 45.4
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.2e-107 394.4 464 43.5
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 7.7e-107 391.7 460 44.8
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.1e-105 387.9 459 44.9
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 2.5e-105 386.7 459 44.7
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.2e-105 386.0 457 45.1
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.5e-105 385.6 457 45.1
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 9.4e-105 384.8 459 44.7
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 2.7e-104 383.3 447 44.3
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 2.7e-104 383.3 459 44.4
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 1.0e-103 381.3 461 44.3
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 1.8e-103 380.6 459 44.2
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 8.8e-103 378.3 460 44.6
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 4.4e-102 375.9 468 43.6
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 5.7e-102 375.6 458 43.4
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 7.4e-102 375.2 465 44.1
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 6.3e-101 372.1 458 42.8
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.4e-100 370.2 484 44.0
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 5.3e-100 369.0 459 42.9
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 5.3e-100 369.0 473 43.1
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.3e-98 364.4 479 44.1
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.7e-98 364.0 458 42.4
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 6.5e-98 362.1 457 40.0
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 5.5e-97 359.0 457 40.7
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 4.7e-96 355.9 478 42.1
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 2.6e-94 350.1 448 40.4
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.6e-94 350.1 478 41.6
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.0e-91 340.5 377 46.4
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 3.8e-90 336.3 307 52.4
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 1.5e-89 334.3 460 42.6
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 2.5e-89 333.6 463 40.2
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 3.6e-88 329.7 311 50.2
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 9.8e-86 321.6 460 41.1
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.3e-85 321.2 475 40.6
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.3e-85 321.2 475 40.6
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 2.8e-85 320.1 461 39.5
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 3.7e-85 319.7 468 40.8
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 6.3e-85 318.9 475 39.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 6.3e-85 318.9 492 35.6
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 1.8e-84 317.4 471 40.8
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 4.1e-84 316.2 471 40.6
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.0e-83 313.9 335 46.3
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.0e-83 313.9 382 42.7
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 4.5e-83 312.8 256 58.2
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.5e-81 307.0 308 50.0
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.7e-80 303.5 314 49.4
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 8.3e-77 292.0 451 39.0
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 1.4e-76 291.2 261 56.3
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 9.2e-76 288.5 435 37.7
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 4.5e-75 286.2 497 36.0
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 5.0e-74 282.7 495 33.5
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.3e-73 279.6 502 34.7
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 4.3e-73 279.6 425 38.1
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.0e-71 273.1 305 43.9
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 1.8e-68 264.2 295 46.4
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 2.1e-64 250.8 502 34.3
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.5e-57 228.0 250 42.4
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 1.8e-55 221.1 354 37.9
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 3.5e-51 206.8 293 41.0
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 2.5e-49 200.7 137 65.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.1e-48 197.6 303 36.6
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 2.1e-48 197.6 193 51.8
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 1.4e-47 194.9 178 53.4
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.9e-45 186.4 143 60.1
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 8.4e-45 185.7 206 48.1
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 1.7e-34 151.4 428 28.5
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.6e-30 137.5 196 38.8
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 2.3e-26 124.4 298 29.5
Sabra12G0032500 Salix brachista HOM05D004162 ORTHO05D004543 3.6e-24 117.1 88 65.9
CiPaw.09G010700 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.1e-18 96.7 120 45.0
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 5.6e-17 93.2 61 67.2
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 1.6e-16 91.7 128 35.2
ATR1149G147 Amborella trichopoda HOM05D004162 ORTHO05D004543 8.1e-16 89.4 143 37.1
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 1.5e-14 85.1 71 59.2
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.4e-14 84.0 110 41.8
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 9.3e-12 75.9 60 56.7
AT2G04395 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 6.0e-11 73.2 82 40.2
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 1.0e-10 72.4 64 51.6
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 2.3e-10 71.2 103 41.7
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 3.0e-10 70.9 103 43.7
vmacro09754 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 1.6e-08 65.1 86 41.9


User provided reference genes

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