Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.2e-50 203.4 262 100.0
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 8.6e-31 138.3 259 84.6
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 3.1e-28 129.8 83 80.7
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 6.8e-28 128.6 84 75.0
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.2e-27 127.9 83 77.1
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.0e-27 127.1 77 83.1
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 2.0e-27 127.1 85 69.4
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.0e-27 127.1 77 83.1
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.6e-27 126.7 74 83.8
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 3.4e-27 126.3 81 80.2
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 4.4e-27 125.9 76 81.6
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 4.4e-27 125.9 79 78.5
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 7.6e-27 125.2 77 81.8
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 9.9e-27 124.8 75 81.3
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 9.9e-27 124.8 85 70.6
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 9.9e-27 124.8 258 82.9
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.3e-26 124.4 85 78.8
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.7e-26 124.0 72 86.1
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 2.2e-26 123.6 84 75.0
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 2.9e-26 123.2 77 80.5
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.9e-26 123.2 75 81.3
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.9e-26 123.2 77 81.8
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 3.7e-26 122.9 81 76.5
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 3.7e-26 122.9 77 81.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 4.9e-26 122.5 85 71.8
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 4.9e-26 122.5 73 83.6
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.4e-26 122.1 77 79.2
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 8.3e-26 121.7 79 75.9
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.4e-25 120.9 77 77.9
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.4e-25 120.9 80 72.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.9e-25 120.6 77 80.5
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 4.1e-25 119.4 73 83.6
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 4.1e-25 119.4 72 79.2
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 5.4e-25 119.0 82 70.7
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 7.1e-25 118.6 81 71.6
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 7.1e-25 118.6 85 69.4
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 7.1e-25 118.6 72 81.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 7.1e-25 118.6 72 81.9
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 7.1e-25 118.6 72 81.9
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 7.1e-25 118.6 77 76.6
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 9.2e-25 118.2 81 71.6
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.2e-24 117.9 86 70.9
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 4.6e-24 115.9 68 86.8
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 6.0e-24 115.5 73 82.2
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 6.0e-24 115.5 73 82.2
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.3e-23 114.4 77 75.3
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.3e-23 114.4 71 80.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.7e-23 114.0 83 69.9
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 3.0e-23 113.2 76 76.3
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 8.6e-23 111.7 83 68.7
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 1.5e-22 110.9 83 67.5
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 5.6e-22 109.0 76 71.1
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 5.6e-22 109.0 76 71.1
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 5.6e-22 109.0 80 70.0
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 9.6e-22 108.2 76 69.7
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 9.6e-22 108.2 76 69.7
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.2e-21 107.8 76 69.7
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.2e-21 107.8 76 69.7
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.2e-21 107.8 76 69.7
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.2e-21 107.8 76 69.7
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.2e-21 107.8 76 69.7
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.1e-21 107.1 73 76.7
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.1e-21 107.1 77 70.1
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.8e-21 106.7 73 75.3
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.6e-21 106.3 80 67.5
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 4.7e-21 105.9 76 71.1
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 4.7e-21 105.9 69 78.3
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 8.1e-21 105.1 77 66.2
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 5.2e-20 102.4 73 72.6
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 3.4e-19 99.8 61 82.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 3.4e-19 99.8 76 68.4
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 4.4e-19 99.4 70 68.6
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 9.9e-19 98.2 80 65.0
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.7e-18 97.4 76 65.8
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 8.4e-18 95.1 71 67.6
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.4e-17 94.4 73 63.0
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.4e-17 94.4 73 64.4
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 1.4e-17 94.4 72 66.7
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.4e-17 94.4 64 71.9
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.4e-17 94.4 64 71.9
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.9e-17 94.0 66 69.7
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.9e-17 94.0 63 79.4
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.2e-17 93.2 76 63.2
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 5.4e-17 92.4 75 65.3
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.1e-16 90.5 73 61.6
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.1e-16 90.5 73 68.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 3.0e-15 86.7 56 75.0
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 5.1e-15 85.9 60 70.0
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 6.6e-15 85.5 49 85.7
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 8.7e-15 85.1 62 66.1
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 7.3e-14 82.0 52 80.8
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 2.8e-13 80.1 82 54.9
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.1e-12 78.2 63 65.1
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 5.3e-12 75.9 58 63.8
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.6e-11 73.6 48 75.0
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 9.9e-11 71.6 54 72.2
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.9e-10 70.1 82 50.0
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 4.9e-10 69.3 50 78.0
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.0e-08 62.4 75 52.0
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.3e-07 61.2 56 57.1
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 6.6e-07 58.9 56 55.4
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.1e-06 58.2 28 92.9
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 9.6e-06 55.1 42 66.7


User provided reference genes

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