Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A315G48 Lonicera japonica HOM05D002142 ORTHO05D001189 5.4e-106 387.9 228 100.0
Lj5C315G13 Lonicera japonica HOM05D002142 ORTHO05D001189 9.5e-26 121.3 330 37.3
RcHm_v2.0_Chr7g0187971 Rosa chinensis HOM05D000500 ORTHO05D000367 3.5e-12 76.3 93 48.4
Rhsim02G0255400 Rhododendron simsii HOM05D002142 ORTHO05D001189 2.3e-11 73.6 146 39.0
MD06G1126300 Malus domestica HOM05D002142 ORTHO05D001189 1.5e-10 70.9 146 39.7
QL02p026881 Quercus lobata HOM05D002142 ORTHO05D001189 9.5e-10 68.2 158 36.7
Lsat_1_v5_gn_6_80720 Lactuca sativa HOM05D002142 ORTHO05D001189 1.2e-09 67.8 106 50.9
COL.COLO4_10855 Corchorus olitorius HOM05D002142 ORTHO05D001189 2.8e-09 66.6 114 45.6
HanXRQChr03g0083351 Helianthus annuus HOM05D002142 ORTHO05D001189 3.6e-09 66.2 242 32.6
DCAR_009264 Daucus carota HOM05D002142 ORTHO05D001189 4.7e-09 65.9 140 34.3
SGA_v2.0_scaffold88G27237 Striga asiatica HOM05D002142 ORTHO05D001189 4.7e-09 65.9 148 41.9
PSO566G0194 Papaver somniferum HOM05D002142 ORTHO05D001189 6.2e-09 65.5 245 35.1
Rhsim05G0125200 Rhododendron simsii HOM05D002142 ORTHO05D001189 6.2e-09 65.5 296 26.4
FAN04G0632 Fragaria x ananassa HOM05D002142 ORTHO05D001189 1.1e-08 64.7 149 40.3
CANSAT01G1306 Cannabis sativa HOM05D002142 ORTHO05D001189 3.1e-08 63.2 161 33.5
FvH4_5g10240 Fragaria vesca HOM05D002142 ORTHO05D001189 3.1e-08 63.2 150 40.0
Aa31LG3G3640 Aethionema arabicum HOM05D002142 ORTHO05D001189 4.0e-08 62.8 224 37.1
HanXRQChr13g0415741 Helianthus annuus HOM05D002142 ORTHO05D001189 5.2e-08 62.4 332 26.8
LjContig00408g0000558 Lotus japonicus HOM05D002142 ORTHO05D001189 5.2e-08 62.4 234 34.6
Glyma.13G264100 Glycine max HOM05D002142 ORTHO05D001189 8.9e-08 61.6 154 40.9
Nn4g25267 Nelumbo nucifera HOM05D002142 ORTHO05D001189 8.9e-08 61.6 111 42.3
Nn4g25332 Nelumbo nucifera HOM05D002142 ORTHO05D001189 1.2e-07 61.2 155 36.8
Rhsim05G0127700 Rhododendron simsii HOM05D002142 ORTHO05D001189 1.2e-07 61.2 271 25.5
HanXRQChr03g0083161 Helianthus annuus HOM05D002142 ORTHO05D001189 2.0e-07 60.5 114 45.6
Duzib084G0752 Durio zibethinus HOM05D002142 ORTHO05D001189 3.4e-07 59.7 288 28.8
TPR.G21610 Trifolium pratense HOM05D002142 ORTHO05D001189 3.4e-07 59.7 51 56.9
Rhsim11G0111000 Rhododendron simsii HOM05D002142 ORTHO05D019492 4.4e-07 59.3 54 57.4
THA.LOC104806451 Tarenaya hassleriana HOM05D002142 ORTHO05D001189 4.4e-07 59.3 114 38.6
Oeu063646.1 Olea europaea HOM05D002142 ORTHO05D001189 5.8e-07 58.9 82 53.7
Psat6g052800 Pisum sativum HOM05D002142 ORTHO05D001189 5.8e-07 58.9 51 56.9
TWI15G0084 Tripterygium wilfordii HOM05D002142 ORTHO05D001189 5.8e-07 58.9 155 40.0
TWI81G0844 Tripterygium wilfordii HOM05D002142 ORTHO05D001189 5.8e-07 58.9 112 42.9
Manes.01G000031 Manihot esculenta HOM05D002142 ORTHO05D001189 7.6e-07 58.5 160 38.1
Hund02322 Selenicereus undatus HOM05D002142 ORTHO05D001189 7.6e-07 58.5 104 41.3
Ah.07g205000 Amaranthus hybridus HOM05D002142 ORTHO05D001189 9.9e-07 58.2 142 39.4
CAN.G273.3 Capsicum annuum HOM05D002142 ORTHO05D001189 9.9e-07 58.2 53 52.8
Actinidia22237 Actinidia chinensis HOM05D002142 ORTHO05D001189 1.3e-06 57.8 46 63.0
AUR62006045 Chenopodium quinoa HOM05D002142 ORTHO05D001189 1.3e-06 57.8 51 56.9
AUR62035583 Chenopodium quinoa HOM05D002142 ORTHO05D001189 1.3e-06 57.8 51 56.9
Haze_09224 Corylus avellana HOM05D002142 ORTHO05D001189 1.3e-06 57.8 46 58.7
Potri.001G453200 Populus trichocarpa HOM05D002142 ORTHO05D001189 1.3e-06 57.8 111 38.7
Dinv08692 Davidia involucrata HOM05D002142 ORTHO05D001189 2.2e-06 57.0 163 30.7
MD06G1125600 Malus domestica HOM05D002142 ORTHO05D001189 2.2e-06 57.0 96 43.8
Medtr1g078040 Medicago truncatula HOM05D002142 ORTHO05D001189 2.2e-06 57.0 52 53.8
Sabra16G0306300 Salix brachista HOM05D002142 ORTHO05D001189 2.2e-06 57.0 102 40.2
Gohir.A11G017700 Gossypium hirsutum HOM05D002142 ORTHO05D001189 2.9e-06 56.6 53 52.8
Gohir.D11G017500 Gossypium hirsutum HOM05D002142 ORTHO05D001189 2.9e-06 56.6 104 39.4
Gorai.007G018500 Gossypium raimondii HOM05D002142 ORTHO05D001189 2.9e-06 56.6 104 39.4
Lsat_1_v5_gn_6_80660 Lactuca sativa HOM05D002142 ORTHO05D001189 2.9e-06 56.6 109 36.7
Aqoxy1G00933 Aquilegia oxysepala HOM05D002142 ORTHO05D001189 3.7e-06 56.2 106 39.6
CSS0039797 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 3.7e-06 56.2 94 37.2
CiPaw.11G107700 Carya illinoinensis HOM05D002142 ORTHO05D001189 3.7e-06 56.2 51 54.9
DCAR_023771 Daucus carota HOM05D002142 ORTHO05D001189 3.7e-06 56.2 53 52.8
Medtr1g078050 Medicago truncatula HOM05D002142 ORTHO05D001189 3.7e-06 56.2 252 32.9
Oeu020470.1 Olea europaea HOM05D002142 ORTHO05D001189 3.7e-06 56.2 53 54.7
Sabra11G0134000 Salix brachista HOM05D002142 ORTHO05D001189 3.7e-06 56.2 104 38.5
unitig_62.g23266 Utricularia gibba HOM05D002142 ORTHO05D001189 3.7e-06 56.2 53 50.9
Atru.chr9.1824 Acer truncatum HOM05D002142 ORTHO05D001189 4.9e-06 55.8 55 50.9
CSS0028442 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 4.9e-06 55.8 53 52.8
CSS0042091 Camellia sinensis var. sinensis HOM05D002142 ORTHO05D001189 4.9e-06 55.8 53 52.8
Ciclev10018664m.g Citrus clementina HOM05D002142 ORTHO05D001189 4.9e-06 55.8 53 50.9
Lj5g0019010 Lotus japonicus HOM05D002142 ORTHO05D001189 4.9e-06 55.8 52 53.8
PSO210G2933 Papaver somniferum HOM05D002142 ORTHO05D001189 4.9e-06 55.8 52 53.8
PSO210G5211 Papaver somniferum HOM05D002142 ORTHO05D000047 4.9e-06 55.8 209 33.0
PSO761G0484 Papaver somniferum HOM05D002142 ORTHO05D001189 4.9e-06 55.8 52 53.8
TPR.G21595 Trifolium pratense HOM05D002142 ORTHO05D001189 4.9e-06 55.8 52 53.8
GSVIVG01019716001 Vitis vinifera HOM05D002142 ORTHO05D001189 4.9e-06 55.8 53 52.8
Atru.chr6.1560 Acer truncatum HOM05D002142 ORTHO05D001189 6.4e-06 55.5 220 31.4
Aqoxy4G03002 Aquilegia oxysepala HOM05D002142 ORTHO05D001189 6.4e-06 55.5 108 38.0
Cc08_g17090 Coffea canephora HOM05D002142 ORTHO05D001189 6.4e-06 55.5 51 54.9
Phvul.005G075600 Phaseolus vulgaris HOM05D002142 ORTHO05D001189 6.4e-06 55.5 52 53.8
VMungo1080G1137 Vigna mungo HOM05D002142 ORTHO05D001189 6.4e-06 55.5 52 53.8
CDE09G0071 Ceratophyllum demersum HOM05D002142 ORTHO05D001189 8.4e-06 55.1 160 30.6
ClCG09G016660 Citrullus lanatus HOM05D002142 ORTHO05D001189 8.4e-06 55.1 54 51.9
Dinv30959 Davidia involucrata HOM05D002142 ORTHO05D001189 8.4e-06 55.1 53 50.9
Migut.E00710 Erythranthe guttata HOM05D002142 ORTHO05D001189 8.4e-06 55.1 154 37.7
FAN08G3346 Fragaria x ananassa HOM05D002142 ORTHO05D001189 8.4e-06 55.1 280 34.3
Glyma.12G235000 Glycine max HOM05D002142 ORTHO05D001189 8.4e-06 55.1 52 51.9
Nitab4.5_0000450g0080 Nicotiana tabacum HOM05D002142 ORTHO05D001189 8.4e-06 55.1 53 50.9
Nitab4.5_0006317g0010 Nicotiana tabacum HOM05D002142 ORTHO05D001189 8.4e-06 55.1 53 50.9
TPR.G21614 Trifolium pratense HOM05D002142 ORTHO05D005651 8.4e-06 55.1 50 56.0
TAR365G0293 Trochodendron aralioides HOM05D002142 ORTHO05D001189 8.4e-06 55.1 53 52.8


User provided reference genes

Program Settings