Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 0.0e+00 1626.3 824 100.0
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.2e-301 1039.6 827 66.3
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 5.2e-292 1007.7 841 63.9
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 1.7e-290 1002.7 841 63.9
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 9.0e-284 980.3 831 63.5
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 5.1e-279 964.5 841 61.5
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 1.8e-276 956.1 831 61.3
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 4.5e-275 951.4 831 61.3
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 1.4e-273 946.4 831 60.2
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 2.7e-272 942.2 838 60.3
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.5e-272 941.8 839 60.9
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 1.0e-271 940.3 849 59.7
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 1.6e-264 916.4 837 59.5
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 2.7e-264 915.6 835 59.5
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 4.6e-264 914.8 840 60.5
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 2.3e-263 912.5 836 58.9
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 7.4e-262 907.5 838 60.6
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 1.6e-261 906.4 831 59.6
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 4.5e-259 898.3 836 59.7
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 1.1e-257 893.6 838 59.1
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 2.5e-257 892.5 803 59.3
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 5.5e-257 891.3 830 59.3
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 9.3e-257 890.6 839 59.4
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 9.3e-257 890.6 839 58.9
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 5.1e-255 884.8 839 59.2
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 1.6e-253 879.8 844 56.2
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 4.8e-253 878.2 833 57.0
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 4.5e-251 871.7 830 59.2
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 1.7e-250 869.8 839 55.8
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 2.2e-250 869.4 838 56.2
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 2.2e-250 869.4 800 58.6
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 5.0e-250 868.2 832 55.5
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 1.9e-249 866.3 808 58.3
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.2e-249 865.5 828 56.8
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 3.2e-249 865.5 831 55.6
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 1.2e-248 863.6 830 57.3
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 6.1e-248 861.3 827 57.0
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 1.0e-247 860.5 846 55.8
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 2.3e-247 859.4 828 56.3
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 1.1e-246 857.1 840 56.7
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 3.3e-246 855.5 830 56.7
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 4.3e-246 855.1 832 55.0
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 5.7e-246 854.7 828 56.2
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 5.7e-246 854.7 830 55.1
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 4.8e-245 851.7 831 54.8
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 1.4e-244 850.1 837 54.2
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 4.1e-244 848.6 825 56.4
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 5.3e-244 848.2 826 55.9
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 1.2e-243 847.0 828 55.7
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 7.7e-243 844.3 829 56.0
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.0e-242 844.0 823 54.7
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 1.0e-242 844.0 830 55.8
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 3.2e-241 839.0 829 56.1
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 2.1e-240 836.3 824 55.0
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 1.8e-239 833.2 830 55.1
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 1.1e-238 830.5 829 55.6
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.0e-238 829.7 830 55.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 3.3e-238 828.9 834 54.2
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 2.4e-236 822.8 829 54.8
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 4.1e-236 822.0 834 54.7
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 5.9e-235 818.1 829 54.8
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 8.5e-234 814.3 830 54.8
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 8.8e-231 804.3 834 54.7
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 3.3e-230 802.4 826 53.0
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.4e-228 796.2 873 52.5
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 5.3e-228 795.0 830 51.8
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.0e-227 793.1 844 52.7
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 3.5e-227 792.3 829 52.7
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.7e-221 773.5 744 57.4
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 4.8e-221 771.9 843 51.4
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 1.8e-220 770.0 693 58.2
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 2.4e-220 769.6 830 51.3
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 3.1e-220 769.2 829 51.5
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 1.6e-219 766.9 842 51.5
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.0e-219 766.5 826 52.9
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 1.0e-215 754.2 804 52.0
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 4.0e-215 752.3 828 51.0
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 5.7e-214 748.4 830 50.6
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 7.5e-214 748.0 802 51.5
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 4.8e-213 745.3 808 51.2
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 6.3e-213 745.0 846 49.4
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 2.7e-211 739.6 841 49.6
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 2.9e-210 736.1 826 49.9
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 5.0e-210 735.3 831 51.0
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.1e-209 734.2 827 49.8
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 1.1e-209 734.2 841 51.5
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 2.5e-209 733.0 826 49.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 1.2e-208 730.7 834 49.4
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 2.8e-208 729.6 827 50.1
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 1.4e-207 727.2 827 49.1
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 2.4e-204 716.5 846 48.7
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 6.6e-202 708.4 548 64.8
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 3.4e-198 696.0 840 48.2
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 5.6e-193 678.7 828 48.6
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 1.6e-192 677.2 831 50.3
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 6.4e-189 665.2 776 48.1
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.1e-188 662.5 455 69.7
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 9.9e-174 614.8 669 52.9
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.0e-170 604.7 666 50.5
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 4.3e-169 599.4 845 41.1
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 9.9e-166 588.2 829 42.6
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 1.4e-164 584.3 841 41.1
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 1.6e-163 580.9 588 53.1
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 6.7e-154 548.9 583 52.5
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 1.6e-152 544.3 744 41.9
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 4.0e-143 513.1 366 66.9
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 2.3e-130 470.7 366 63.1
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 4.5e-126 456.4 766 36.8
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 1.7e-125 454.5 421 58.7
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 1.1e-116 425.2 406 54.9
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.7e-115 420.6 529 48.2
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 5.2e-106 389.8 448 53.6
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 1.4e-98 365.2 534 46.3
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.3e-88 332.0 484 44.6
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 2.7e-86 324.3 475 45.9
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 2.0e-81 308.1 514 35.4
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.1e-74 285.8 233 57.9
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 4.6e-54 217.2 414 39.6
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 3.9e-45 187.6 433 37.4
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 2.5e-44 184.9 335 39.7
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 4.0e-42 177.6 167 52.7
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 4.9e-40 170.6 484 26.7
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 1.0e-37 162.9 250 45.2
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 3.3e-28 131.3 189 49.7
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.1e-26 126.3 213 36.2
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 2.0e-25 122.1 90 58.9
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.4e-25 121.3 83 67.5
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 3.0e-21 108.2 161 40.4
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 1.3e-19 102.8 156 44.9
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 3.8e-16 91.3 65 63.1
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 6.5e-16 90.5 128 39.1
EL10Ac9g22556 Beta vulgaris HOM05D005319 ORTHO05D006632 1.5e-09 69.3 66 63.6
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 2.6e-09 68.6 106 44.3
EL10Ac6g13976 Beta vulgaris HOM05D005319 ORTHO05D006632 5.9e-09 67.4 91 56.0
C01p22550 Brassica napus HOM05D005319 ORTHO05D006632 5.9e-09 67.4 122 40.2
BolC1t02188H Brassica oleracea HOM05D005319 ORTHO05D006632 5.9e-09 67.4 122 40.2
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 1.3e-08 66.2 359 24.5
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 3.8e-08 64.7 337 21.7
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.1e-07 63.2 320 20.9
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 1.9e-07 62.4 358 23.7
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 3.2e-07 61.6 59 50.8
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 3.2e-07 61.6 59 50.8
Hund17863 Selenicereus undatus HOM05D002279 ORTHO05D002644 4.2e-07 61.2 447 22.1
Cre17.g733208 Chlamydomonas reinhardtii HOM05D002097 ORTHO05D002248 1.2e-06 59.7 78 44.9
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 2.1e-06 58.9 317 19.6
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 2.7e-06 58.5 408 22.8
AUR62022513 Chenopodium quinoa HOM05D006053 ORTHO05D008381 4.7e-06 57.8 79 43.0
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 6.1e-06 57.4 287 25.1
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 6.1e-06 57.4 316 24.7
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 6.1e-06 57.4 360 23.1
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 7.9e-06 57.0 288 26.0
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 7.9e-06 57.0 359 22.8
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 7.9e-06 57.0 312 23.7
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 7.9e-06 57.0 302 24.5


User provided reference genes

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