Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 7.3e-104 380.6 193 100.0
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 3.6e-66 255.4 176 73.3
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 2.6e-61 239.2 175 66.9
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 1.6e-58 229.9 175 66.3
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 2.0e-56 223.0 175 62.9
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.7e-55 219.9 175 63.4
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.0e-52 210.7 179 63.1
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 1.2e-50 203.8 177 62.1
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.7e-50 202.6 175 62.3
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.2e-48 197.2 158 62.0
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.2e-48 197.2 177 60.5
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.3e-47 193.7 175 60.0
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 1.7e-47 193.4 177 57.6
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 1.7e-47 193.4 177 59.9
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 1.7e-47 193.4 177 59.9
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 7.0e-46 188.0 174 58.6
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.6e-45 186.8 171 57.9
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 2.7e-45 186.0 177 57.6
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 1.0e-44 184.1 178 55.6
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 3.2e-43 179.1 181 53.6
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 5.5e-43 178.3 176 56.8
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 5.5e-43 178.3 175 56.0
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 9.4e-43 177.6 175 56.0
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 9.4e-43 177.6 175 54.9
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 9.4e-43 177.6 186 55.4
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 1.2e-42 177.2 176 51.7
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 6.1e-42 174.9 177 54.8
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 3.0e-41 172.6 179 53.1
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.2e-40 170.6 180 55.0
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 7.5e-40 167.9 177 49.7
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 7.5e-40 167.9 169 57.4
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 9.8e-40 167.5 178 48.9
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 9.8e-40 167.5 179 52.5
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.7e-39 166.8 186 50.5
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 3.7e-39 165.6 157 53.5
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 4.9e-39 165.2 175 56.0
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 6.3e-39 164.9 178 52.8
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 8.3e-39 164.5 177 49.7
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.1e-38 164.1 176 52.3
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 7.0e-38 161.4 181 50.8
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 9.1e-38 161.0 179 50.3
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 2.7e-37 159.5 175 47.4
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 3.5e-37 159.1 178 51.1
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 3.5e-37 159.1 183 51.4
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 1.0e-36 157.5 178 51.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.7e-36 156.8 177 48.6
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 1.5e-35 153.7 175 50.3
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 3.3e-35 152.5 177 49.7
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 1.6e-34 150.2 178 52.2
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 2.1e-34 149.8 177 52.0
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 2.8e-34 149.4 177 50.3
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 6.1e-34 148.3 172 51.7
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 1.8e-33 146.7 174 48.9
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.8e-33 146.7 178 47.8
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 5.2e-33 145.2 117 61.5
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.2e-32 144.1 114 64.0
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 1.5e-32 143.7 180 50.0
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 7.5e-32 141.4 181 47.5
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 7.5e-32 141.4 181 47.5
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 2.2e-31 139.8 181 47.5
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 4.9e-31 138.7 175 46.9
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 6.3e-31 138.3 115 65.2
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 1.4e-30 137.1 115 64.3
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.8e-30 136.7 187 47.1
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.8e-30 136.7 177 46.9
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.8e-30 136.7 180 48.3
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 2.4e-30 136.3 125 55.2
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 4.1e-30 135.6 181 46.4
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 4.1e-30 135.6 181 47.0
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 9.2e-30 134.4 179 46.4
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 2.0e-29 133.3 181 47.0
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 3.5e-29 132.5 157 49.7
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 4.6e-29 132.1 169 45.6
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 5.9e-29 131.7 192 42.2
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 1.7e-28 130.2 184 43.5
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 1.7e-28 130.2 179 46.9
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.7e-28 130.2 184 41.8
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 1.7e-28 130.2 176 43.8
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 3.9e-28 129.0 179 44.7
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.0e-28 128.6 125 52.8
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 6.6e-28 128.3 184 42.4
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 8.6e-28 127.9 179 44.1
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-27 127.5 179 44.7
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 1.5e-27 127.1 186 42.5
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.5e-27 127.1 156 50.0
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.3e-27 125.9 179 44.1
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 1.2e-26 124.0 184 41.8
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 1.2e-26 124.0 184 41.8
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 3.6e-26 122.5 184 41.3
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.6e-26 122.5 155 49.0
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 8.0e-26 121.3 149 49.7
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.8e-25 120.2 186 41.4
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 4.0e-25 119.0 184 40.8
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 4.0e-25 119.0 184 40.8
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 6.8e-25 118.2 184 40.8
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 6.8e-25 118.2 190 41.6
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 2.6e-24 116.3 185 41.1
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 5.8e-24 115.2 93 61.3
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 4.9e-23 112.1 117 51.3
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.4e-22 110.5 185 42.2
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 9.2e-22 107.8 185 41.6
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.6e-18 97.1 109 47.7
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 1.4e-17 94.0 127 44.1
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 4.0e-17 92.4 112 45.5
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 9.8e-16 87.8 125 44.8
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.2e-14 82.8 59 67.8
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 9.2e-14 81.3 141 38.3
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 3.5e-13 79.3 71 54.9
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 3.0e-12 76.3 91 51.6
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 6.6e-12 75.1 92 46.7
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 1.9e-11 73.6 158 34.8
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.5e-11 73.2 118 39.8
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 1.2e-10 70.9 125 36.0
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.6e-10 69.3 77 50.6
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 1.1e-09 67.8 59 57.6
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 2.3e-09 66.6 50 60.0
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 1.5e-08 63.9 98 40.8
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.4e-08 62.8 88 47.7
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 7.6e-08 61.6 42 66.7
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 1.3e-07 60.8 112 37.5
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 4.9e-07 58.9 84 44.0
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 4.9e-07 58.9 104 32.7
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 4.9e-07 58.9 82 37.8
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.1e-06 55.8 75 45.3
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 4.1e-06 55.8 104 38.5
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 5.4e-06 55.5 51 49.0
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 5.4e-06 55.5 51 49.0


User provided reference genes

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