Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 2.7e-135 485.3 245 100.0
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 5.0e-89 331.6 239 72.4
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 2.0e-77 293.1 184 82.6
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.0e-77 293.1 226 63.7
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.3e-76 290.4 226 63.7
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 1.7e-76 290.0 214 69.2
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 2.2e-76 289.7 226 63.7
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 8.2e-76 287.7 206 70.4
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 4.1e-75 285.4 201 70.6
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.3e-73 280.4 201 69.2
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.5e-73 277.7 201 70.1
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 1.6e-71 273.5 226 62.4
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.0e-70 270.8 199 69.3
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 1.0e-70 270.8 239 61.5
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 2.3e-70 269.6 199 66.8
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 3.0e-70 269.2 208 66.3
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 4.0e-70 268.9 228 61.0
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 4.0e-70 268.9 199 67.8
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 5.2e-70 268.5 199 67.3
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 1.5e-69 266.9 228 61.4
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 1.7e-68 263.5 211 62.6
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 6.3e-68 261.5 232 59.9
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 2.4e-67 259.6 238 58.8
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 2.4e-67 259.6 233 56.7
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 2.4e-67 259.6 200 64.5
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 4.5e-66 255.4 205 62.4
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 4.5e-66 255.4 245 59.6
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 4.5e-66 255.4 204 65.2
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 5.9e-66 255.0 224 57.1
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 5.9e-66 255.0 197 63.5
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 7.7e-66 254.6 198 62.6
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 1.0e-65 254.2 210 59.5
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.0e-65 254.2 243 58.4
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 3.8e-65 252.3 240 55.4
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 6.5e-65 251.5 232 57.8
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.5e-64 250.4 204 61.3
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 1.9e-64 250.0 205 62.0
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 3.2e-64 249.2 231 57.6
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 3.2e-64 249.2 212 58.5
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 4.2e-64 248.8 203 61.1
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 4.2e-64 248.8 199 62.8
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 5.5e-64 248.4 232 54.3
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.2e-64 248.1 218 57.3
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 7.2e-64 248.1 204 63.2
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.6e-63 246.9 203 60.6
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 2.1e-63 246.5 218 58.7
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 1.4e-62 243.8 268 52.6
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 1.4e-62 243.8 231 55.4
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 4.0e-62 242.3 219 57.5
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 5.2e-62 241.9 219 57.5
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 8.8e-62 241.1 201 59.7
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 1.5e-61 240.4 204 61.3
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 1.5e-61 240.4 209 57.4
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 4.4e-61 238.8 202 57.4
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 7.5e-61 238.0 221 57.9
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 4.8e-60 235.3 203 57.6
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 3.1e-59 232.6 198 60.6
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 3.1e-59 232.6 198 56.6
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 5.4e-59 231.9 223 52.5
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 5.4e-59 231.9 222 53.6
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 1.2e-58 230.7 226 52.7
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 1.2e-58 230.7 216 56.5
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 1.6e-58 230.3 216 54.6
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 2.7e-58 229.6 198 58.1
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 5.9e-58 228.4 221 53.4
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 3.8e-57 225.7 170 65.9
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 8.6e-57 224.6 294 44.9
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 9.5e-56 221.1 220 52.7
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.6e-55 220.3 220 52.7
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 2.1e-55 219.9 216 50.9
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 8.0e-55 218.0 216 50.5
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 8.0e-55 218.0 216 50.5
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 8.0e-55 218.0 397 37.3
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 1.4e-54 217.2 184 59.2
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 6.8e-54 214.9 216 50.0
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 1.5e-53 213.8 220 50.9
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 1.5e-53 213.8 210 50.5
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 3.4e-53 212.6 211 50.7
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 5.7e-53 211.8 210 52.4
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 1.3e-52 210.7 210 51.9
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 1.3e-52 210.7 201 51.7
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 1.8e-51 206.8 201 51.2
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 3.1e-51 206.1 201 51.2
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 2.7e-50 203.0 160 65.6
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 1.7e-49 200.3 212 50.0
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 2.5e-48 196.4 214 49.1
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 1.0e-46 191.0 198 49.0
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 1.4e-46 190.7 205 49.3
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 7.5e-45 184.9 200 47.5
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 8.3e-44 181.4 207 45.9
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 4.1e-43 179.1 199 49.2
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 4.1e-43 179.1 198 43.9
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 1.1e-40 171.0 198 43.9
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 1.5e-40 170.6 173 54.3
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 1.5e-40 170.6 198 43.9
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 3.1e-38 162.9 223 42.2
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 1.9e-35 153.7 120 60.0
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 3.2e-35 152.9 164 45.7
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 3.2e-35 152.9 132 59.8
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 7.0e-35 151.8 136 58.8
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 7.5e-29 131.7 165 46.1
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 2.3e-25 120.2 147 43.5
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 2.2e-20 103.6 197 31.5
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 3.8e-20 102.8 82 59.8
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 5.2e-14 82.4 89 49.4
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 4.2e-11 72.8 54 55.6
Lj9A350T62 Lonicera japonica HOM05D007345 ORTHO05D009277 1.0e-09 68.2 33 100.0
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 8.7e-09 65.1 46 65.2
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 3.3e-08 63.2 114 35.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.6e-08 62.4 100 32.0
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 5.6e-08 62.4 100 32.0
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 5.6e-08 62.4 100 32.0
BraA08t35607Z Brassica rapa HOM05D006451 ORTHO05D007680 5.6e-08 62.4 100 32.0
BcaB04g21349 Brassica carinata HOM05D001789 ORTHO05D001755 9.6e-08 61.6 114 35.1
A08p37070 Brassica napus HOM05D006451 ORTHO05D007680 9.6e-08 61.6 100 32.0
Glyma.02G004400 Glycine max HOM05D006451 ORTHO05D007680 9.6e-08 61.6 111 30.6
MELO3C004392.2 Cucumis melo HOM05D001789 ORTHO05D001755 1.3e-07 61.2 115 34.8
CsaV3_2G003990 Cucumis sativus L. HOM05D001789 ORTHO05D001755 1.3e-07 61.2 115 34.8
Nn1g02587 Nelumbo nucifera HOM05D001789 ORTHO05D001755 1.6e-07 60.8 114 35.1
MSTRG.4055 Avicennia marina HOM05D006451 ORTHO05D007680 2.1e-07 60.5 101 32.7
CANSAT54G0997 Cannabis sativa HOM05D001789 ORTHO05D001755 2.1e-07 60.5 117 34.2
Sabra08G0119100 Salix brachista HOM05D006451 ORTHO05D007680 2.1e-07 60.5 103 33.0
Potri.008G156500 Populus trichocarpa HOM05D006451 ORTHO05D007680 2.8e-07 60.1 103 33.0
HPP92_009631 Vanilla planifolia HOM05D001789 ORTHO05D001755 2.8e-07 60.1 103 34.0
BraA01t04507Z Brassica rapa HOM05D001789 ORTHO05D001755 3.6e-07 59.7 114 34.2
AL3G14790 Arabidopsis lyrata HOM05D001789 ORTHO05D001755 4.8e-07 59.3 114 34.2
Sp3g03550 Schrenkiella parvula HOM05D001789 ORTHO05D001755 4.8e-07 59.3 114 34.2
CDE10G0598 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 6.2e-07 58.9 109 30.3
Dinv20290 Davidia involucrata HOM05D001789 ORTHO05D001755 6.2e-07 58.9 114 34.2
AagrBONN_evm.TU.Sc2ySwM_368.3405 Anthoceros agrestis HOM05D001789 ORTHO05D001755 8.1e-07 58.5 112 35.7
Thhalv10020698m.g Eutrema salsugineum HOM05D001789 ORTHO05D001755 8.1e-07 58.5 114 34.2
Os12g0636100 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 8.1e-07 58.5 99 31.3
AT3G04710 Arabidopsis thaliana HOM05D001789 ORTHO05D001755 1.1e-06 58.2 112 33.9
BcaC09g47780 Brassica carinata HOM05D001789 ORTHO05D001755 1.1e-06 58.2 114 33.3
BNapus_Darmor_BZH_scaffold_78p00990 Brassica napus HOM05D001789 ORTHO05D001755 1.1e-06 58.2 114 33.3
Carub.0003s0386 Capsella rubella HOM05D001789 ORTHO05D001755 1.1e-06 58.2 114 33.3
CDE10G0543 Ceratophyllum demersum HOM05D006451 ORTHO05D007680 1.4e-06 57.8 100 32.0
Eucgr.H04321 Eucalyptus grandis HOM05D001789 ORTHO05D001755 1.4e-06 57.8 114 33.3
Sc25g0004270 Simmondsia chinensis HOM05D006451 ORTHO05D007680 1.4e-06 57.8 111 31.5
THA.LOC104826059 Tarenaya hassleriana HOM05D006451 ORTHO05D007680 1.4e-06 57.8 103 32.0
unitig_37.g12638 Utricularia gibba HOM05D001789 ORTHO05D001755 1.4e-06 57.8 120 30.8
ATR0665G154 Amborella trichopoda HOM05D001789 ORTHO05D001755 1.8e-06 57.4 114 33.3
A03p33800 Brassica napus HOM05D001789 ORTHO05D001755 1.8e-06 57.4 114 33.3
Gohir.D13G175000 Gossypium hirsutum HOM05D001789 ORTHO05D001755 1.8e-06 57.4 103 30.1
Gorai.013G200300 Gossypium raimondii HOM05D001789 ORTHO05D001755 1.8e-06 57.4 103 30.1
Os05g0103600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.8e-06 57.4 114 33.3
Potri.010G082900 Populus trichocarpa HOM05D006451 ORTHO05D007680 1.8e-06 57.4 103 31.1
Sed0026394 Sechium edule HOM05D006451 ORTHO05D007680 1.8e-06 57.4 100 32.0
HPP92_001912 Vanilla planifolia HOM05D006451 ORTHO05D007680 1.8e-06 57.4 112 34.8
CSS0016190 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 2.4e-06 57.0 105 34.3
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 2.4e-06 57.0 114 32.5
COL.COLO4_15370 Corchorus olitorius HOM05D001789 ORTHO05D001755 2.4e-06 57.0 114 31.6
Duzib128G1133 Durio zibethinus HOM05D001789 ORTHO05D001755 2.4e-06 57.0 107 31.8
Lj6A610G48 Lonicera japonica HOM05D006451 ORTHO05D007680 2.4e-06 57.0 119 32.8
Sabra10G0060200 Salix brachista HOM05D006451 ORTHO05D007680 2.4e-06 57.0 103 31.1
SGA_v2.0_scaffold191G40453 Striga asiatica HOM05D006451 ORTHO05D007680 2.4e-06 57.0 111 31.5
BraA03t12554Z Brassica rapa HOM05D001789 ORTHO05D001755 3.1e-06 56.6 112 33.0
Thecc.05G281000 Theobroma cacao HOM05D001789 ORTHO05D001755 3.1e-06 56.6 87 35.6
BcaC01g04353 Brassica carinata HOM05D001789 ORTHO05D001755 4.0e-06 56.2 112 33.0
CSS0014602 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 4.0e-06 56.2 119 32.8
CSS0023735 Camellia sinensis var. sinensis HOM05D006451 ORTHO05D007680 4.0e-06 56.2 119 32.8
AUR62043956 Chenopodium quinoa HOM05D006451 ORTHO05D007680 4.0e-06 56.2 111 30.6
Gohir.A13G169500 Gossypium hirsutum HOM05D001789 ORTHO05D001755 4.0e-06 56.2 115 33.9
RcHm_v2.0_Chr3g0450651 Rosa chinensis HOM05D001789 ORTHO05D001755 4.0e-06 56.2 114 32.5
AUR62034703 Chenopodium quinoa HOM05D006451 ORTHO05D007680 5.3e-06 55.8 111 30.6
Ciclev10028402m.g Citrus clementina HOM05D001789 ORTHO05D001755 5.3e-06 55.8 106 33.0
Cc03_g04170 Coffea canephora HOM05D006451 ORTHO05D007680 5.3e-06 55.8 100 32.0
Duzib151G0283 Durio zibethinus HOM05D006451 ORTHO05D007680 5.3e-06 55.8 103 31.1
MD04G1226000 Malus domestica HOM05D001789 ORTHO05D001755 5.3e-06 55.8 114 32.5
Os12g0604800 Oryza sativa ssp. japonica HOM05D006451 ORTHO05D007680 5.3e-06 55.8 100 31.0
Rhsim05G0163300 Rhododendron simsii HOM05D001789 ORTHO05D001755 5.3e-06 55.8 114 33.3
Sed0022842 Sechium edule HOM05D001789 ORTHO05D001755 5.3e-06 55.8 88 36.4
Aa31LG5G15100 Aethionema arabicum HOM05D001789 ORTHO05D001755 6.9e-06 55.5 121 30.6
Potri.013G042300 Populus trichocarpa HOM05D001789 ORTHO05D001755 6.9e-06 55.5 88 36.4
Prupe.6G344800 Prunus persica HOM05D001789 ORTHO05D001755 6.9e-06 55.5 114 32.5
Thecc.04G237100 Theobroma cacao HOM05D006451 ORTHO05D007680 6.9e-06 55.5 103 30.1
TAR362G1293 Trochodendron aralioides HOM05D006451 ORTHO05D007680 6.9e-06 55.5 119 31.9
C03p41100 Brassica napus HOM05D001789 ORTHO05D001755 9.0e-06 55.1 112 33.0
COL.COLO4_21546 Corchorus olitorius HOM05D006451 ORTHO05D007680 9.0e-06 55.1 103 30.1
vmacro06868 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 9.0e-06 55.1 118 31.4


User provided reference genes

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