Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.8e-262 908.7 443 100.0
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 6.2e-215 750.7 478 77.6
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 3.8e-212 741.5 482 75.9
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 6.4e-212 740.7 491 75.2
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.0e-209 733.4 478 74.5
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 3.9e-209 731.5 483 73.7
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 8.7e-209 730.3 483 73.7
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 4.3e-208 728.0 523 70.2
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 3.6e-207 724.9 479 73.7
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.4e-206 723.0 486 72.4
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 1.4e-206 723.0 481 73.8
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 2.4e-206 722.2 475 74.1
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 6.4e-204 714.1 510 69.6
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 6.0e-202 707.6 483 72.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 6.0e-202 707.6 482 72.6
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.0e-201 706.8 484 72.1
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 1.3e-201 706.4 483 71.8
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 2.5e-200 702.2 493 70.6
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 5.6e-200 701.0 483 71.8
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 6.2e-199 697.6 486 70.2
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 5.3e-198 694.5 474 74.3
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 6.9e-198 694.1 477 71.7
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.2e-197 693.3 482 70.5
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 2.6e-197 692.2 486 71.2
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 4.5e-197 691.4 487 69.6
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 4.5e-197 691.4 481 70.7
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.7e-196 689.5 482 70.5
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.7e-196 689.5 482 69.9
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 4.9e-196 688.0 476 71.0
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.2e-195 684.9 479 69.9
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 5.5e-195 684.5 489 69.5
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 7.1e-195 684.1 511 66.7
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 4.6e-194 681.4 482 69.7
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.3e-193 679.1 492 67.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.9e-192 676.0 482 69.5
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 2.5e-192 675.6 482 70.3
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 9.6e-192 673.7 481 69.6
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.3e-191 673.3 481 69.4
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 2.4e-190 669.1 473 70.4
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 5.3e-190 667.9 482 69.5
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.0e-189 666.0 479 68.3
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 1.3e-188 663.3 486 69.1
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 1.7e-188 662.9 482 67.6
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.8e-188 661.8 480 66.5
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 1.1e-187 660.2 482 67.2
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.4e-187 659.8 481 69.0
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 9.3e-187 657.1 480 66.0
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.5e-186 655.2 449 73.3
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 1.8e-185 652.9 497 66.8
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 1.9e-184 649.4 484 67.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.6e-183 646.4 482 67.0
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 3.7e-183 645.2 481 66.3
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 6.3e-183 644.4 499 67.3
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.5e-181 639.8 474 67.9
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 7.7e-181 637.5 475 67.4
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.0e-180 637.1 474 65.2
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 9.4e-179 630.6 482 62.9
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.4e-177 626.7 503 64.4
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 6.7e-177 624.4 481 65.1
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 8.8e-177 624.0 480 66.0
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 8.8e-177 624.0 483 65.8
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 8.8e-177 624.0 477 65.2
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 8.8e-177 624.0 481 65.3
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 1.1e-176 623.6 480 66.0
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.5e-176 623.2 480 66.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.5e-176 623.2 480 65.8
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 3.3e-176 622.1 480 66.2
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 3.3e-176 622.1 513 62.0
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 4.3e-176 621.7 480 65.8
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 7.4e-176 620.9 502 63.1
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 3.7e-175 618.6 481 65.7
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 1.1e-174 617.1 439 69.0
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.1e-174 617.1 451 68.3
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 1.8e-174 616.3 481 65.1
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 3.1e-174 615.5 468 65.0
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 7.9e-170 600.9 468 64.3
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 2.4e-166 589.3 527 59.4
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.8e-161 573.2 459 65.4
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 2.4e-158 562.8 474 59.5
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.6e-157 559.3 475 61.3
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 8.5e-156 554.3 441 62.4
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 4.7e-154 548.5 474 59.5
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.5e-149 532.3 534 54.5
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.0e-148 530.8 483 53.8
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.4e-145 520.4 579 52.0
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.3e-140 503.8 482 54.1
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 6.6e-140 501.5 474 54.9
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 6.6e-140 501.5 468 52.8
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.1e-139 500.7 449 53.9
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 6.1e-130 468.4 316 71.8
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 1.2e-128 464.2 301 73.8
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.2e-128 464.2 475 48.8
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.4e-126 457.2 499 51.7
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 1.1e-118 431.0 437 48.7
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 1.4e-118 430.6 301 70.4
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 1.2e-117 427.6 474 51.3
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 2.3e-116 423.3 300 68.0
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 8.6e-116 421.4 231 85.3
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 3.6e-114 416.0 372 57.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 7.1e-110 401.7 473 49.0
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.8e-84 317.4 300 58.0
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 7.9e-77 292.0 619 30.2
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 5.3e-73 279.3 358 46.1
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.6e-69 267.7 486 33.5
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.0e-64 250.8 204 60.8
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 5.9e-56 222.6 502 31.3
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 6.1e-53 212.6 158 67.7
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.8e-50 203.8 104 86.5
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 2.0e-48 197.6 159 66.0
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 7.7e-48 195.7 148 63.5
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 6.5e-47 192.6 160 64.4
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.1e-43 181.8 158 59.5
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.0e-43 181.0 158 60.1
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.3e-42 178.3 158 58.9
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 2.4e-41 174.1 183 52.5
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.3e-34 151.8 85 77.6
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.6e-32 144.8 291 35.7
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 6.4e-18 96.3 88 59.1
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.0e-15 89.0 48 85.4
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.7e-10 71.6 68 57.4
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 1.9e-09 68.2 39 82.1
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.2e-08 65.5 31 83.9
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.2e-08 65.5 31 83.9
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.2e-08 65.5 31 83.9
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.2e-08 65.5 31 83.9
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 3.5e-08 63.9 31 80.6


User provided reference genes

Program Settings