Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 3.7e-108 394.8 189 100.0
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.0e-98 362.5 188 90.4
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.0e-98 362.5 188 90.4
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 4.5e-98 361.3 188 91.0
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.9e-98 360.9 188 89.9
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 89.4
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 89.4
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.0e-97 360.1 189 89.4
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.3e-97 359.8 185 90.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.3e-97 359.8 189 88.4
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.3e-97 359.8 188 88.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.3e-97 359.8 188 88.8
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 2.9e-97 358.6 189 88.9
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.8e-97 358.2 188 88.8
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.8e-97 358.2 188 88.8
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 3.8e-97 358.2 188 88.8
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.0e-97 357.8 185 90.3
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.0e-97 357.8 185 90.3
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 5.0e-97 357.8 184 89.7
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 5.0e-97 357.8 188 88.8
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 6.5e-97 357.5 187 89.3
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 6.5e-97 357.5 184 90.8
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.1e-96 356.7 184 90.8
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 88.8
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.5e-96 356.3 188 88.3
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.9e-96 355.9 190 88.4
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 1.9e-96 355.9 186 88.7
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.9e-96 355.9 188 87.2
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.5e-96 355.5 185 89.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.5e-96 355.5 188 87.2
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.5e-96 355.5 188 88.8
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.5e-96 355.5 184 89.7
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.5e-96 355.5 184 89.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 3.2e-96 355.1 185 89.7
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 3.2e-96 355.1 185 88.6
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 3.2e-96 355.1 188 88.3
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.2e-96 355.1 184 89.7
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 4.2e-96 354.8 189 88.4
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 4.2e-96 354.8 184 89.7
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 5.5e-96 354.4 184 89.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.5e-96 354.4 184 90.2
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.5e-96 354.4 184 90.2
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 7.2e-96 354.0 188 87.2
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 7.2e-96 354.0 184 90.2
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 9.4e-96 353.6 184 89.1
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 9.4e-96 353.6 184 89.1
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.2e-95 353.2 185 89.2
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.2e-95 353.2 185 89.2
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.2e-95 353.2 185 89.2
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.2e-95 353.2 185 89.2
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.2e-95 353.2 185 89.2
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.2e-95 353.2 184 89.1
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.2e-95 353.2 190 87.9
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.2e-95 353.2 185 89.2
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 1.6e-95 352.8 188 88.3
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.6e-95 352.8 188 88.3
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 1.6e-95 352.8 184 88.6
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 2.1e-95 352.4 184 88.0
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 2.7e-95 352.1 185 88.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.7e-95 352.1 190 87.9
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.7e-95 352.1 185 89.2
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.6e-95 351.7 184 90.2
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 3.6e-95 351.7 184 88.6
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.6e-95 351.7 184 89.1
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.6e-95 351.7 184 89.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 3.6e-95 351.7 191 87.4
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 3.6e-95 351.7 183 89.6
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 3.6e-95 351.7 185 88.1
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 3.6e-95 351.7 184 88.6
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.6e-95 351.7 184 89.1
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 4.7e-95 351.3 184 88.0
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 4.7e-95 351.3 184 88.0
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 4.7e-95 351.3 184 88.0
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 4.7e-95 351.3 184 89.1
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.7e-95 351.3 191 88.0
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 6.1e-95 350.9 191 88.0
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 6.1e-95 350.9 185 89.2
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 8.0e-95 350.5 184 88.0
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 8.0e-95 350.5 184 88.0
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 8.0e-95 350.5 184 90.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 8.0e-95 350.5 184 87.5
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 8.0e-95 350.5 184 88.6
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 8.0e-95 350.5 183 89.1
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.0e-94 350.1 184 89.1
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 1.0e-94 350.1 189 86.8
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.0e-94 350.1 184 88.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.0e-94 350.1 187 86.6
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.4e-94 349.7 191 86.9
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.4e-94 349.7 188 87.8
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.4e-94 349.7 184 88.0
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.8e-94 349.4 183 89.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.8e-94 349.4 183 88.5
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.8e-94 349.4 188 87.8
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.3e-94 349.0 184 86.4
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.3e-94 349.0 187 86.6
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.3e-94 349.0 187 86.6
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.3e-94 349.0 187 86.6
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.3e-94 349.0 184 89.7
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 2.3e-94 349.0 184 87.5
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 2.3e-94 349.0 183 88.5
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.3e-94 349.0 189 86.8
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.3e-94 349.0 185 87.6
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 3.0e-94 348.6 184 88.0
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 3.0e-94 348.6 184 88.0
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 3.0e-94 348.6 184 88.0
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 3.0e-94 348.6 184 87.0
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 3.0e-94 348.6 189 88.9
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.0e-94 348.6 183 89.1
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 4.0e-94 348.2 184 87.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.0e-94 348.2 191 86.9
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 4.0e-94 348.2 184 87.5
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 5.2e-94 347.8 184 87.5
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 5.2e-94 347.8 185 87.6
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 6.7e-94 347.4 185 87.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 6.7e-94 347.4 183 88.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 8.8e-94 347.1 187 86.1
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 8.8e-94 347.1 183 86.9
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 8.8e-94 347.1 185 86.5
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 1.2e-93 346.7 191 87.4
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.5e-93 346.3 189 87.8
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.5e-93 346.3 186 86.6
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.5e-93 346.3 189 88.4
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.5e-93 346.3 191 85.9
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 3.3e-93 345.1 189 85.7
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 9.7e-93 343.6 184 86.4
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.3e-92 343.2 182 87.4
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.3e-92 343.2 182 87.4
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.3e-92 343.2 181 87.8
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.7e-92 342.8 204 80.9
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 4.8e-92 341.3 199 81.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 3.1e-91 338.6 192 83.3
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 4.1e-91 338.2 186 84.4
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 9.1e-91 337.0 182 85.2
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.5e-88 329.7 187 80.7
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.5e-88 328.9 182 84.6
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 4.7e-87 324.7 254 64.6
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 8.8e-86 320.5 183 78.1
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-85 320.1 188 82.4
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 9.8e-85 317.0 191 79.6
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.4e-83 312.4 182 80.8
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 2.0e-82 309.3 160 88.8
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.8e-77 290.4 187 74.9
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 2.8e-76 288.9 152 85.5
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 2.5e-72 275.8 144 87.5
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 4.4e-69 265.0 140 85.0
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.8e-69 264.6 140 85.7
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.3e-68 263.5 137 88.3
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.6e-65 251.1 130 86.2
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.4e-62 243.4 136 82.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.5e-61 240.0 197 66.0
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 2.0e-61 239.6 128 82.0
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.6e-61 239.2 188 66.5
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 5.8e-61 238.0 146 77.4
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 7.5e-61 237.7 162 72.2
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 4.9e-60 235.0 190 55.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 3.0e-57 225.7 188 55.9
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 3.5e-50 202.2 166 64.5
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.6e-47 192.2 157 65.0
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.1e-43 180.6 90 87.8
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-41 174.1 115 71.3
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.5e-40 169.5 103 74.8
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.6e-40 168.3 87 83.9
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 9.6e-40 167.5 90 82.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 9.6e-40 167.5 87 83.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-39 166.4 87 83.9
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.6e-39 165.6 87 83.9
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.2e-39 164.9 87 82.8
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.2e-39 164.9 87 82.8
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-35 153.7 87 80.5
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-34 150.6 157 51.0
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 6.6e-33 144.8 79 81.0
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.5e-32 143.7 94 76.6
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 9.6e-32 141.0 136 55.9
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 3.6e-31 139.0 69 81.2
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.5e-29 133.7 70 92.9
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 119.0 62 79.0
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 119.0 62 79.0
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 119.0 62 79.0
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 119.0 62 79.0
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 119.0 62 79.0
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 3.9e-25 119.0 62 79.0
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 4.3e-16 89.0 44 93.2
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 9.6e-16 87.8 46 91.3
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 9.0e-14 81.3 55 72.7


User provided reference genes

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