Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 2.0e-83 312.4 158 100.0
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 2.2e-77 292.4 153 95.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 2.0e-70 269.2 153 88.2
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 7.4e-70 267.3 152 86.8
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 6.3e-69 264.2 153 85.6
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 2.4e-68 262.3 152 85.5
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.0e-67 259.2 153 83.7
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 3.4e-67 258.5 152 83.6
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 3.8e-66 255.0 152 82.2
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 5.0e-66 254.6 153 81.7
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 1.1e-65 253.4 152 83.6
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 7.9e-64 247.3 152 78.9
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 7.9e-64 247.3 152 79.6
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 3.5e-51 205.3 146 68.5
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.9e-51 204.5 146 69.2
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 1.7e-50 203.0 146 68.5
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.7e-50 203.0 146 68.5
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.7e-50 203.0 146 68.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 6.5e-50 201.1 146 68.5
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.5e-49 199.1 146 67.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.2e-49 198.7 146 67.1
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 5.5e-49 198.0 146 67.1
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 7.2e-49 197.6 153 63.4
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 1.2e-48 196.8 146 67.1
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 1.2e-48 196.8 148 65.5
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 3.6e-48 195.3 146 67.1
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.4e-47 193.4 153 62.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 1.8e-47 193.0 148 64.9
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 3.0e-47 192.2 146 63.0
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 5.2e-47 191.4 147 62.6
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.2e-46 190.3 147 59.9
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 1.2e-46 190.3 152 63.8
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 1.5e-46 189.9 146 64.4
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 1.5e-46 189.9 143 64.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.5e-46 189.9 147 60.5
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 2.0e-46 189.5 147 59.9
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 2.6e-46 189.1 143 65.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 2.6e-46 189.1 152 63.8
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 3.4e-46 188.7 147 62.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 7.5e-46 187.6 154 61.7
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 7.5e-46 187.6 141 64.5
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 9.8e-46 187.2 134 69.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 9.8e-46 187.2 148 62.2
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 3.7e-45 185.3 146 61.6
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 1.4e-44 183.3 147 62.6
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 1.8e-44 183.0 146 61.6
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 1.8e-44 183.0 147 63.9
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.4e-44 182.6 153 60.8
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 2.4e-44 182.6 148 61.5
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 2.4e-44 182.6 146 61.0
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 9.1e-44 180.6 146 60.3
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 2.0e-43 179.5 148 59.5
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 3.5e-43 178.7 143 63.6
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 1.0e-42 177.2 131 67.2
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 1.0e-42 177.2 131 67.2
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 8.5e-42 174.1 149 60.4
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 1.1e-41 173.7 148 58.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 1.5e-41 173.3 146 60.3
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 1.5e-41 173.3 146 60.3
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 1.9e-41 172.9 149 60.4
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 3.2e-41 172.2 143 61.5
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 9.5e-41 170.6 149 59.7
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 9.5e-41 170.6 141 60.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 9.5e-41 170.6 146 56.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 9.5e-41 170.6 153 51.0
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 2.1e-40 169.5 140 60.7
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 2.1e-40 169.5 138 56.5
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 2.1e-40 169.5 140 62.1
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 2.7e-40 169.1 138 56.5
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 8.0e-40 167.5 140 60.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 8.0e-40 167.5 140 60.7
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 1.4e-39 166.8 133 61.7
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 1.8e-39 166.4 142 59.2
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 3.0e-39 165.6 137 61.3
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 5.2e-39 164.9 140 60.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 8.8e-39 164.1 149 54.4
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 1.2e-38 163.7 136 58.1
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 5.7e-38 161.4 151 55.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 9.8e-38 160.6 153 49.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 9.8e-38 160.6 140 52.9
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 1.7e-37 159.8 150 56.0
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 2.2e-37 159.5 131 58.8
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 2.8e-37 159.1 153 51.0
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 2.4e-36 156.0 153 50.3
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 2.4e-36 156.0 134 59.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.0e-36 154.5 135 52.6
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 9.2e-36 154.1 136 56.6
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.2e-36 154.1 135 52.6
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 4.5e-35 151.8 147 51.7
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 4.5e-35 151.8 131 58.0
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 5.9e-35 151.4 136 55.1
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 3.8e-34 148.7 144 54.9
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 7.3e-33 144.4 129 52.7
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 1.2e-32 143.7 143 50.3
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.2e-32 143.7 143 48.3
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 3.6e-32 142.1 146 48.6
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 1.8e-31 139.8 149 44.3
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 5.2e-31 138.3 135 47.4
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 8.9e-31 137.5 131 52.7
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 4.4e-30 135.2 162 45.7
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 4.4e-30 135.2 148 44.6
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 3.7e-29 132.1 151 45.0
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.0e-18 97.4 96 45.8
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.4e-15 87.0 144 30.6
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.4e-12 76.3 42 76.2
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 2.4e-12 76.3 42 76.2
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.4e-12 76.3 42 76.2
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.6e-11 73.6 112 33.9
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.7e-11 72.8 42 73.8
Psat3g007440 Pisum sativum HOM05D000832 ORTHO05D000900 1.3e-10 70.5 40 72.5
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 9.5e-09 64.3 127 28.3
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.1e-08 63.2 135 28.9
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 3.6e-08 62.4 49 65.3


User provided reference genes

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