Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 3.2e-295 1017.7 514 100.0
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 1.1e-260 902.9 512 87.9
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 9.0e-258 893.3 527 85.8
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 2.6e-257 891.7 514 87.2
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 5.1e-253 877.5 505 85.3
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 1.9e-252 875.5 525 84.8
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 3.7e-251 871.3 527 83.1
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 4.5e-249 864.4 557 79.2
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 9.9e-249 863.2 500 85.4
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 1.0e-245 853.2 497 85.9
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 9.7e-236 820.1 514 79.6
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 2.0e-228 795.8 514 78.4
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 2.0e-225 785.8 514 77.0
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 1.0e-224 783.5 514 77.0
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 1.7e-224 782.7 527 76.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 1.7e-224 782.7 527 75.7
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.2e-224 782.3 515 76.7
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 1.1e-223 780.0 528 74.6
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 3.2e-223 778.5 515 76.5
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 4.2e-223 778.1 527 74.8
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 7.2e-223 777.3 514 75.3
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 1.2e-222 776.5 527 75.1
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 1.2e-222 776.5 527 74.6
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 7.9e-222 773.9 518 76.3
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 1.4e-221 773.1 514 75.7
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 2.3e-221 772.3 517 75.8
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.3e-220 768.5 514 74.7
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 5.7e-220 767.7 514 74.9
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 9.7e-220 766.9 515 74.8
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 1.7e-219 766.1 517 75.4
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 3.7e-219 765.0 517 74.9
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 4.8e-219 764.6 528 73.3
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 1.8e-218 762.7 514 75.5
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 2.4e-218 762.3 514 77.4
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 4.5e-217 758.1 516 73.6
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 8.5e-216 753.8 527 72.7
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 1.2e-214 750.0 514 73.7
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.0e-212 742.7 514 73.0
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 9.7e-212 740.3 504 75.0
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 9.7e-212 740.3 515 72.0
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.7e-211 739.6 525 72.2
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 8.2e-211 737.3 515 72.4
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 1.4e-210 736.5 527 70.4
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 5.3e-210 734.6 567 67.4
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 1.7e-208 729.6 529 69.6
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 3.8e-208 728.4 512 72.3
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 2.5e-207 725.7 530 69.8
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 9.4e-207 723.8 512 72.1
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 1.0e-205 720.3 512 71.9
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 4.0e-205 718.4 516 70.0
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 5.2e-205 718.0 520 69.8
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 4.4e-204 714.9 516 69.8
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 2.7e-201 705.7 515 70.1
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 3.5e-201 705.3 514 68.9
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 3.5e-201 705.3 515 68.5
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 7.7e-201 704.1 518 68.5
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 1.0e-200 703.7 486 74.3
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 3.8e-200 701.8 512 67.8
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 6.5e-200 701.0 468 75.0
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 8.5e-200 700.7 530 68.7
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 2.5e-199 699.1 512 68.0
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 2.5e-199 699.1 528 67.6
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 3.2e-199 698.7 514 68.9
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 8.0e-198 694.1 515 67.4
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.0e-197 693.7 533 65.5
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.4e-194 681.4 516 66.9
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 3.5e-193 678.7 514 66.0
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 1.0e-192 677.2 516 66.1
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 1.0e-192 677.2 538 64.3
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 3.8e-192 675.2 514 66.3
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.9e-191 672.9 516 66.3
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.2e-191 671.8 516 66.9
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 6.1e-190 667.9 516 65.9
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 1.4e-189 666.8 514 65.6
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 3.0e-189 665.6 513 66.1
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 4.0e-189 665.2 514 65.4
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 3.4e-188 662.1 517 67.1
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 4.4e-188 661.8 513 65.9
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.7e-188 661.4 526 65.0
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 7.5e-188 661.0 526 63.9
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 7.5e-188 661.0 535 63.9
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 6.3e-187 657.9 535 63.7
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 8.3e-187 657.5 506 67.6
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 8.3e-187 657.5 503 67.4
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.4e-186 656.0 546 63.7
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.2e-185 653.7 506 65.8
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.0e-185 652.9 517 65.0
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 2.0e-185 652.9 514 64.0
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 4.5e-185 651.7 534 62.9
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 5.0e-184 648.3 527 63.9
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.3e-183 645.6 430 75.1
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 9.5e-183 644.0 524 62.6
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 1.8e-181 639.8 511 64.8
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 6.8e-181 637.9 511 63.2
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 1.5e-180 636.7 528 64.4
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.6e-180 636.0 528 64.6
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 3.4e-180 635.6 528 64.6
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-179 633.6 528 64.2
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 1.7e-176 623.2 527 62.0
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 3.6e-174 615.5 512 64.5
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 1.4e-173 613.6 514 62.8
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 8.9e-173 610.9 514 63.0
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 1.2e-172 610.5 514 60.5
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 2.6e-172 609.4 442 70.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 2.3e-168 596.3 530 57.9
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 1.2e-164 583.9 514 58.9
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.2e-158 563.9 442 65.6
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 1.1e-157 560.8 470 62.1
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 5.8e-156 555.1 498 59.2
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 2.9e-147 526.2 355 74.4
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 9.3e-130 468.0 390 62.1
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 1.5e-127 460.7 452 57.3
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 3.3e-127 459.5 528 48.3
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 1.6e-118 430.6 512 46.1
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 1.5e-116 424.1 504 45.0
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 3.8e-115 419.5 388 55.4
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 5.1e-104 382.5 467 48.8
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 7.7e-100 368.6 476 43.5
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 3.0e-59 233.8 139 83.5
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 8.3e-54 215.7 437 38.7
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 6.6e-43 179.5 123 69.9
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 6.0e-36 156.4 137 61.3
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 2.5e-26 124.4 79 74.7
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 3.1e-24 117.5 289 32.2
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 9.0e-24 115.9 76 72.4
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 3.4e-23 114.0 72 73.6
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 7.6e-23 112.8 72 79.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-22 111.7 143 38.5
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 4.6e-20 103.6 65 72.3
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 7.9e-20 102.8 104 54.8
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 8.1e-17 92.8 248 28.2
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-10 70.9 52 57.7
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 2.8e-09 67.8 80 47.5
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 1.2e-07 62.4 46 65.2
Actinidia18436 Actinidia chinensis HOM05D005650 ORTHO05D007020 2.6e-07 61.2 56 55.4
Actinidia18430 Actinidia chinensis HOM05D020173 ORTHO05D007020 5.9e-07 60.1 60 51.7


User provided reference genes

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