Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 5.6e-153 544.3 280 100.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 2.4e-135 485.7 261 95.8
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.9e-129 466.1 253 95.3
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.8e-111 406.4 281 74.4
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.6e-107 393.3 274 74.1
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 7.9e-107 391.0 274 74.5
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.5e-105 386.0 280 70.4
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.3e-105 385.2 269 73.6
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.4e-105 384.4 275 69.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.4e-105 384.4 275 69.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 9.6e-105 384.0 280 71.1
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.1e-104 382.9 298 67.4
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 7.1e-100 367.9 279 65.6
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.7e-96 355.5 265 70.6
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 5.3e-95 351.7 274 68.6
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 3.6e-91 339.0 289 60.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.6e-91 338.6 265 63.8
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.0e-90 337.4 284 62.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 8.8e-90 334.3 284 59.5
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 5.7e-89 331.6 275 59.6
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 3.7e-88 328.9 264 64.0
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 8.2e-88 327.8 275 61.1
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.1e-87 325.9 278 60.4
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.1e-87 325.5 275 60.4
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 5.3e-87 325.1 275 60.7
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 9.1e-87 324.3 276 60.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.5e-86 322.0 261 61.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.7e-86 321.2 279 59.5
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 5.0e-85 318.5 279 59.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.6e-83 313.5 271 58.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.1e-83 313.2 264 61.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.7e-83 312.8 272 58.5
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 2.7e-83 312.8 272 57.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.6e-83 312.4 242 64.9
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.0e-82 310.8 275 58.2
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.0e-82 310.8 279 58.8
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.4e-82 310.5 256 60.9
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.4e-82 310.5 279 58.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 6.7e-82 308.1 266 58.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.1e-81 307.4 289 55.4
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.1e-81 307.4 277 56.3
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.5e-81 307.0 279 57.0
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 9.7e-81 304.3 278 57.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.7e-80 303.5 251 60.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 6.3e-80 301.6 268 57.8
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 3.5e-78 295.8 278 54.3
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.0e-77 294.3 251 61.8
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.3e-77 293.9 278 53.6
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.7e-77 293.5 285 54.4
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 5.0e-77 292.0 271 55.0
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 8.5e-77 291.2 252 57.9
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 8.5e-77 291.2 252 57.9
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.1e-76 290.8 257 59.5
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 5.5e-76 288.5 288 55.2
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 7.2e-76 288.1 320 48.4
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 9.4e-76 287.7 283 54.4
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 9.4e-76 287.7 260 56.5
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 1.2e-75 287.3 283 52.7
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.1e-75 286.6 258 59.3
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.6e-75 285.8 252 56.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.0e-74 284.3 264 53.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 8.8e-74 281.2 252 56.7
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 8.8e-74 281.2 253 56.1
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.0e-73 280.0 271 53.1
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 3.3e-73 279.3 281 52.3
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.3e-72 277.3 283 54.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.1e-71 274.2 261 51.3
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.4e-71 273.1 280 51.1
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.4e-71 273.1 247 56.3
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.1e-71 272.7 297 50.2
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.1e-71 272.3 282 52.5
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.3e-71 271.9 252 54.4
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.2e-70 270.8 278 51.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.6e-70 270.4 280 51.8
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 4.5e-70 268.9 278 51.4
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 7.7e-70 268.1 275 52.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.0e-69 267.7 278 51.4
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.7e-69 266.9 273 51.3
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-69 266.9 285 50.9
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.2e-69 266.5 251 53.0
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.2e-69 266.5 397 39.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.2e-69 266.5 253 53.8
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 3.8e-69 265.8 270 51.9
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 5.0e-69 265.4 216 63.0
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 5.0e-69 265.4 253 53.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.9e-68 263.5 278 50.4
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 2.5e-68 263.1 261 52.9
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 7.2e-68 261.5 288 51.0
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.1e-67 260.0 292 49.3
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.7e-67 259.6 254 51.6
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.7e-67 259.6 290 49.3
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 3.6e-67 259.2 290 50.0
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.7e-67 258.8 278 51.8
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.0e-66 257.7 289 50.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.0e-66 257.7 290 50.0
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 1.4e-66 257.3 181 68.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.3e-66 256.5 246 52.8
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 3.0e-66 256.1 291 48.1
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 6.8e-66 255.0 280 46.1
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-65 254.2 278 51.1
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.7e-64 250.4 280 45.7
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.7e-64 250.4 280 45.7
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 8.3e-64 248.1 282 48.2
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.4e-63 247.3 333 44.4
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 3.5e-62 242.7 285 48.1
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.3e-61 240.7 283 45.2
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 8.5e-61 238.0 301 43.9
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.5e-60 237.3 269 49.8
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.5e-60 235.3 276 46.0
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 6.3e-56 221.9 273 45.4
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.6e-54 217.2 279 42.7
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.3e-53 214.2 175 62.3
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.0e-53 212.2 226 53.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.2e-52 209.1 175 61.1
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.1e-51 206.8 207 52.7
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 8.0e-51 204.9 230 48.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.4e-47 193.4 252 44.0
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.1e-47 192.6 177 58.2
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.6e-45 185.3 140 64.3
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.3e-44 182.6 276 39.9
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.6e-38 162.5 206 45.1
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.3e-36 155.2 245 38.4
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.8e-35 153.3 152 51.3
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.8e-35 153.3 181 47.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 3.6e-35 152.9 103 69.9
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.1e-35 151.8 124 61.3
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.0e-34 149.4 184 45.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 9.8e-33 144.8 164 47.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 4.9e-32 142.5 165 45.5
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 5.1e-29 132.5 254 33.1
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 6.6e-29 132.1 129 51.2
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 7.3e-28 128.6 274 31.8
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 7.3e-28 128.6 421 27.8
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.2e-27 127.9 330 29.1
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 8.1e-27 125.2 238 34.0
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.4e-26 124.4 166 42.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.0e-25 120.6 169 41.4
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 9.9e-25 118.2 271 29.5
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-23 114.4 86 65.1
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-21 108.2 187 35.8
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 2.3e-21 107.1 145 42.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.1e-19 100.5 243 32.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.1e-18 98.2 145 37.9
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.1e-18 98.2 145 37.9
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.2e-17 94.7 65 70.8
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.5e-17 94.4 246 30.5
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.9e-16 89.4 83 55.4
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.4e-15 87.8 61 65.6
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 4.2e-15 86.3 232 29.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 5.4e-15 85.9 65 64.6
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.1e-13 79.3 61 65.6
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 1.5e-12 77.8 131 32.1
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 3.3e-12 76.6 103 42.7
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 7.3e-12 75.5 39 84.6
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.3e-11 74.7 135 34.8
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.6e-11 73.2 251 26.7
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.6e-09 65.5 78 44.9
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 2.2e-08 63.9 70 50.0
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 7.1e-07 58.9 134 32.8
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 2.7e-06 57.0 43 60.5
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 4.6e-06 56.2 98 41.8


User provided reference genes

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