Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 5.1e-34 147.9 122 100.0
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 1.7e-26 122.9 70 88.6
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 2.3e-26 122.5 70 82.9
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 3.9e-26 121.7 70 87.1
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 7.3e-25 117.5 70 84.3
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 4.8e-24 114.8 70 80.0
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 8.1e-24 114.0 70 78.6
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.4e-23 113.2 70 77.1
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 2.4e-23 112.5 70 81.4
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 2.4e-23 112.5 70 78.6
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 5.3e-23 111.3 70 78.6
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 6.9e-23 110.9 69 84.1
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 2.6e-22 109.0 70 77.1
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 2.6e-22 109.0 70 75.7
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 3.4e-22 108.6 70 75.7
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 3.4e-22 108.6 70 77.1
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 4.4e-22 108.2 70 75.7
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 5.8e-22 107.8 70 74.3
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 5.8e-22 107.8 70 74.3
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 7.6e-22 107.5 70 74.3
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 9.9e-22 107.1 70 75.7
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 72.9
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.3e-21 106.7 70 72.9
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 1.3e-21 106.7 68 77.9
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 1.7e-21 106.3 70 72.9
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 1.7e-21 106.3 69 75.4
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.7e-21 106.3 70 77.1
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.2e-21 105.9 69 72.5
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 2.2e-21 105.9 70 74.3
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 2.9e-21 105.5 70 72.9
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 3.8e-21 105.1 70 72.9
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 3.8e-21 105.1 67 74.6
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.8e-21 105.1 67 74.6
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.8e-21 105.1 67 74.6
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.8e-21 105.1 67 74.6
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 6.4e-21 104.4 69 73.9
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 8.4e-21 104.0 70 75.7
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 8.4e-21 104.0 70 75.7
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 8.4e-21 104.0 67 74.6
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 8.4e-21 104.0 67 74.6
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 1.1e-20 103.6 70 71.4
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.1e-20 103.6 70 71.4
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 1.9e-20 102.8 70 72.9
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 2.4e-20 102.4 69 71.0
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 2.4e-20 102.4 69 75.4
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.2e-20 102.1 69 71.0
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 3.2e-20 102.1 70 71.4
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 4.2e-20 101.7 68 72.1
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 4.2e-20 101.7 68 72.1
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 72.9
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 5.4e-20 101.3 70 70.0
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 7.1e-20 100.9 69 71.0
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 7.1e-20 100.9 70 74.3
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 7.1e-20 100.9 67 71.6
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 9.3e-20 100.5 70 68.6
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 9.3e-20 100.5 68 70.6
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 9.3e-20 100.5 68 70.6
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 9.3e-20 100.5 70 68.6
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 9.3e-20 100.5 70 71.4
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 1.6e-19 99.8 70 72.9
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 70.6
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 70.6
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 2.1e-19 99.4 70 71.4
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 2.1e-19 99.4 70 70.0
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 73.5
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 2.1e-19 99.4 70 70.0
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 2.7e-19 99.0 70 67.1
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 2.7e-19 99.0 70 70.0
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 69 71.0
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 70 70.0
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 2.7e-19 99.0 67 70.1
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 4.6e-19 98.2 70 71.4
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 4.6e-19 98.2 71 73.2
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 4.6e-19 98.2 67 74.6
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 4.6e-19 98.2 70 70.0
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 6.0e-19 97.8 65 72.3
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 6.0e-19 97.8 70 68.6
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 7.9e-19 97.4 68 70.6
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 7.9e-19 97.4 71 70.4
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 7.9e-19 97.4 70 74.3
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 7.9e-19 97.4 70 68.6
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 71.6
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.3e-18 96.7 68 72.1
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 73.1
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.3e-18 96.7 67 73.1
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 1.7e-18 96.3 67 71.6
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 64.3
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.7e-18 96.3 68 69.1
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 68.6
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.7e-18 96.3 67 71.6
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 70.0
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.7e-18 96.3 68 72.1
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.7e-18 96.3 70 65.7
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.3e-18 95.9 70 65.7
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 2.3e-18 95.9 70 68.6
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 2.3e-18 95.9 71 67.6
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 2.3e-18 95.9 70 68.6
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 70.6
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 70.6
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 70.6
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 70.6
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 70.6
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 72.1
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.9e-18 95.1 69 68.1
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.9e-18 95.1 69 68.1
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 3.9e-18 95.1 69 68.1
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 3.9e-18 95.1 70 62.9
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 5.1e-18 94.7 69 66.7
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 8.7e-18 94.0 70 67.1
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 8.7e-18 94.0 71 69.0
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 8.7e-18 94.0 68 70.6
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.1e-17 93.6 70 64.3
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.1e-17 93.6 70 64.3
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 1.5e-17 93.2 70 68.6
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 1.5e-17 93.2 67 70.1
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 1.5e-17 93.2 69 72.5
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.5e-17 93.2 70 62.9
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.9e-17 92.8 70 67.1
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 1.9e-17 92.8 70 62.9
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 1.9e-17 92.8 68 72.1
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 2.5e-17 92.4 68 69.1
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.5e-17 92.4 67 68.7
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 3.3e-17 92.0 70 65.7
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 3.3e-17 92.0 66 69.7
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 5.6e-17 91.3 70 64.3
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 5.6e-17 91.3 70 61.4
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 9.6e-17 90.5 62 72.6
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 9.6e-17 90.5 70 62.9
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 9.6e-17 90.5 68 67.6
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.6e-16 89.7 69 63.8
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.1e-16 89.4 70 62.9
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 2.8e-16 89.0 70 67.1
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 3.6e-16 88.6 70 62.9
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 3.6e-16 88.6 67 65.7
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 6.2e-16 87.8 70 61.4
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.1e-15 87.0 69 63.8
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 1.4e-15 86.7 70 57.1
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 1.8e-15 86.3 70 61.4
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 3.1e-15 85.5 60 70.0
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 5.3e-15 84.7 66 63.6
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 6.9e-15 84.3 61 67.2
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 6.9e-15 84.3 66 63.6
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 5.8e-14 81.3 70 62.9
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 8.4e-13 77.4 70 54.3
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.4e-12 76.6 54 72.2
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 5.4e-12 74.7 52 75.0
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 5.4e-12 74.7 72 55.6
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.5e-11 72.0 72 50.0
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 4.6e-11 71.6 72 47.2
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 1.8e-10 69.7 53 66.0
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 1.1e-09 67.0 46 69.6
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 2.1e-08 62.8 70 42.9
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 1.1e-07 60.5 42 69.0
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 3.1e-07 58.9 42 61.9
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 9.0e-07 57.4 46 58.7


User provided reference genes

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