Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0022413 Lotus japonicus HOM05D007638 ORTHO05D009805 5.1e-270 933.7 441 100.0
Ca_21958_v3 Cicer arietinum L. HOM05D007638 ORTHO05D009805 3.4e-213 745.0 447 80.5
arahy.Tifrunner.gnm1.ann1.UY0NCU Arachis hypogaea HOM05D007638 ORTHO05D009805 1.8e-198 696.0 451 75.6
Lalb_Chr16g0389341 Lupinus albus HOM05D007638 ORTHO05D009805 4.0e-198 694.9 449 75.7
Glyma.05G058500 Glycine max HOM05D007638 ORTHO05D009805 2.3e-193 679.1 464 72.8
TPR.G37700 Trifolium pratense HOM05D007638 ORTHO05D009805 7.6e-189 664.1 444 73.6
arahy.Tifrunner.gnm1.ann1.E4IRCP Arachis hypogaea HOM05D007638 ORTHO05D009805 3.7e-183 645.2 417 75.5
Psat4g071600 Pisum sativum HOM05D007638 ORTHO05D009805 7.4e-176 620.9 390 77.2
Cfa012740 Carpinus fangiana HOM05D007638 ORTHO05D009805 1.1e-168 597.0 454 65.0
QL12p012553 Quercus lobata HOM05D007638 ORTHO05D009805 9.7e-168 594.0 443 65.5
CiPaw.12G109000 Carya illinoinensis HOM05D007638 ORTHO05D009805 1.4e-163 580.1 443 64.3
Prupe.5G071400 Prunus persica HOM05D007638 ORTHO05D009805 1.5e-160 570.1 446 62.3
Thecc.03G253300 Theobroma cacao HOM05D007638 ORTHO05D009805 2.5e-160 569.3 446 62.3
GSVIVG01001312001 Vitis vinifera HOM05D007638 ORTHO05D009805 1.3e-159 567.0 454 61.7
Gohir.D09G190600 Gossypium hirsutum HOM05D007638 ORTHO05D009805 6.3e-159 564.7 445 61.6
Potri.003G110600 Populus trichocarpa HOM05D007638 ORTHO05D009805 1.8e-158 563.1 455 62.4
Gorai.006G213300 Gossypium raimondii HOM05D007638 ORTHO05D009805 5.3e-158 561.6 445 61.6
MD06G1060400 Malus domestica HOM05D007638 ORTHO05D009805 4.5e-157 558.5 450 62.0
Hma1.2p1_2238F.1_g317800 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 5.9e-157 558.1 447 61.5
TWI15G0131 Tripterygium wilfordii HOM05D007638 ORTHO05D009805 5.9e-157 558.1 442 60.4
Gohir.A09G196000 Gossypium hirsutum HOM05D007638 ORTHO05D009805 7.7e-157 557.8 447 61.5
Atru.chr9.1327 Acer truncatum HOM05D007638 ORTHO05D009805 1.0e-156 557.4 451 61.4
Dinv39130 Davidia involucrata HOM05D007638 ORTHO05D009805 3.8e-156 555.4 468 59.0
Manes.02G038700 Manihot esculenta HOM05D007638 ORTHO05D009805 6.7e-153 544.7 448 60.7
Sed0016401 Sechium edule HOM05D007638 ORTHO05D009805 7.4e-152 541.2 442 60.4
CANSAT21G1304 Cannabis sativa HOM05D007638 ORTHO05D009805 1.7e-151 540.0 450 59.3
Sabra03G0076700 Salix brachista HOM05D007638 ORTHO05D009805 1.7e-151 540.0 455 60.2
TAR636G1390 Trochodendron aralioides HOM05D007638 ORTHO05D009805 2.2e-151 539.7 453 59.2
FvH4_5g18700 Fragaria vesca HOM05D007638 ORTHO05D009805 2.6e-149 532.7 446 59.4
RcHm_v2.0_Chr7g0202991 Rosa chinensis HOM05D007638 ORTHO05D009805 2.1e-146 523.1 448 58.9
CsaV3_5G004170 Cucumis sativus L. HOM05D007638 ORTHO05D009805 5.2e-145 518.5 446 57.8
Ciclev10020230m.g Citrus clementina HOM05D007638 ORTHO05D009805 1.1e-144 517.3 454 58.1
Nn1g01039 Nelumbo nucifera HOM05D007638 ORTHO05D009805 2.6e-141 506.1 468 54.9
HanXRQChr17g0549771 Helianthus annuus HOM05D007638 ORTHO05D009805 1.7e-140 503.4 461 57.0
EL10Ac5g13054 Beta vulgaris HOM05D007638 ORTHO05D009805 3.2e-139 499.2 466 55.6
Oeu017018.1 Olea europaea HOM05D007638 ORTHO05D009805 6.1e-138 495.0 464 53.9
Solyc08g078750.4 Solanum lycopersicum HOM05D007638 ORTHO05D009805 1.0e-137 494.2 461 54.7
CAN.G1218.20 Capsicum annuum HOM05D007638 ORTHO05D009805 1.5e-136 490.3 462 54.3
Sopen08g027220 Solanum pennellii HOM05D007638 ORTHO05D009805 1.7e-135 486.9 461 53.6
Rhsim09G0039100 Rhododendron simsii HOM05D007638 ORTHO05D009805 3.7e-135 485.7 550 48.9
Cc08_g12610 Coffea canephora HOM05D007638 ORTHO05D009805 2.0e-133 479.9 476 53.8
Hund14529 Selenicereus undatus HOM05D007638 ORTHO05D009805 2.2e-132 476.5 459 54.0
Ah.02g116770 Amaranthus hybridus HOM05D007638 ORTHO05D009805 8.5e-132 474.6 468 51.1
Migut.A00967 Erythranthe guttata HOM05D007638 ORTHO05D009805 4.7e-130 468.8 474 50.4
THA.LOC104812781 Tarenaya hassleriana HOM05D007638 ORTHO05D009805 8.0e-130 468.0 468 51.1
Lsat_1_v5_gn_3_541 Lactuca sativa HOM05D007638 ORTHO05D009805 2.3e-129 466.5 466 54.1
FAN13G2113 Fragaria x ananassa HOM05D007638 ORTHO05D009805 1.5e-128 463.8 413 57.4
Sc07g0009320 Simmondsia chinensis HOM05D007638 ORTHO05D009805 2.6e-128 463.0 450 52.7
Hma1.2p1_3173F.1_g333580 Hydrangea macrophylla HOM05D007638 ORTHO05D009805 1.1e-126 457.6 464 53.2
Eucgr.D02067 Eucalyptus grandis HOM05D007638 ORTHO05D009805 9.1e-126 454.5 369 60.2
PSO781G0038 Papaver somniferum HOM05D007638 ORTHO05D009805 1.7e-124 450.3 469 51.0
AUR62007504 Chenopodium quinoa HOM05D007638 ORTHO05D009805 1.9e-123 446.8 455 50.1
Peaxi162Scf00002g00171 Petunia axillaris HOM05D007638 ORTHO05D009805 4.7e-122 442.2 456 51.8
PGR031G3001 Punica granatum HOM05D007638 ORTHO05D009805 6.1e-122 441.8 453 52.3
ATR1153G083 Amborella trichopoda HOM05D007638 ORTHO05D009805 8.0e-122 441.4 448 50.9
MSTRG.25529 Avicennia marina HOM05D007638 ORTHO05D009805 1.3e-119 434.1 382 55.5
FAN08G1927 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.7e-117 426.4 442 51.8
PSO541G0423 Papaver somniferum HOM05D007638 ORTHO05D009805 8.0e-114 414.8 442 50.9
SGA_v2.0_scaffold120G32873 Striga asiatica HOM05D007638 ORTHO05D009805 3.1e-113 412.9 518 45.6
CDE11G1220 Ceratophyllum demersum HOM05D007638 ORTHO05D009805 3.4e-112 409.5 457 49.5
Aa31LG2G12650 Aethionema arabicum HOM05D007638 ORTHO05D009805 9.2e-110 401.4 442 47.5
FAN18G0664 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.0e-109 400.2 298 62.1
Nitab4.5_0008481g0020 Nicotiana tabacum HOM05D007638 ORTHO05D009805 1.1e-105 387.9 452 48.0
DCAR_008488 Daucus carota HOM05D007638 ORTHO05D009805 2.6e-104 383.3 309 57.9
Sp7g15100 Schrenkiella parvula HOM05D007638 ORTHO05D009805 3.4e-104 382.9 418 48.8
AUR62039957 Chenopodium quinoa HOM05D007638 ORTHO05D009805 1.3e-103 380.9 456 45.0
ClCG01G003990 Citrullus lanatus HOM05D007638 ORTHO05D009805 3.7e-103 379.4 465 45.8
SEGI_06661 Sequoiadendron giganteum HOM05D007638 ORTHO05D009805 4.3e-99 365.9 491 42.0
Aqoxy7G00749 Aquilegia oxysepala HOM05D007638 ORTHO05D009805 6.8e-97 358.6 407 46.7
vmacro00554 Vaccinium macrocarpon HOM05D007638 ORTHO05D009805 5.4e-94 349.0 526 41.6
Nitab4.5_0000312g0180 Nicotiana tabacum HOM05D007638 ORTHO05D009805 1.1e-91 341.3 335 53.7
Duzib084G1003 Durio zibethinus HOM05D007638 ORTHO05D009805 1.3e-87 327.8 330 51.2
Pp3c9_14850 Physcomitrium patens HOM05D007638 ORTHO05D009805 3.0e-84 316.6 492 37.0
PGSC0003DMG400004754 Solanum tuberosum HOM05D007638 ORTHO05D009805 2.4e-78 297.0 342 47.1
CBR_g20284 Chara braunii HOM05D007638 ORTHO05D009805 1.7e-76 290.8 369 39.3
DCAR_008487 Daucus carota HOM05D007638 ORTHO05D009805 5.4e-70 269.2 340 46.8
Eucgr.D02064 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.2e-69 268.1 323 49.2
Cpa.g.sc29.142 Carica papaya HOM05D007638 ORTHO05D009805 4.0e-65 253.1 292 48.3
AagrBONN_evm.TU.Sc2ySwM_228.4592 Anthoceros agrestis HOM05D007638 ORTHO05D009805 4.5e-64 249.6 469 35.2
Actinidia02124 Actinidia chinensis HOM05D007638 ORTHO05D009805 3.3e-59 233.4 371 41.2
FAN04G2384 Fragaria x ananassa HOM05D007638 ORTHO05D009805 2.1e-58 230.7 208 54.3
MELO3C033998.2 Cucumis melo HOM05D007638 ORTHO05D009805 4.1e-57 226.5 301 46.5
Haze_07891 Corylus avellana HOM05D007638 ORTHO05D009805 5.1e-44 183.0 249 47.4
CSS0011551 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 3.4e-40 170.2 95 76.8
CSS0041058 Camellia sinensis var. sinensis HOM05D007638 ORTHO05D009805 9.4e-22 109.0 120 54.2
Eucgr.L01520 Eucalyptus grandis HOM05D007638 ORTHO05D009805 1.2e-13 82.0 122 46.7
Haze_07890 Corylus avellana HOM05D007638 ORTHO05D009805 1.6e-13 81.6 37 89.2
TWI32G0219 Tripterygium wilfordii HOM05D000032 ORTHO05D009383 4.7e-13 80.1 53 66.0
CARHR074860 Cardamine hirsuta HOM05D000032 ORTHO05D009383 1.2e-11 75.5 60 58.3
AagrBONN_evm.TU.Sc2ySwM_369.192 Anthoceros agrestis HOM05D000032 ORTHO05D009383 1.5e-11 75.1 81 46.9
Eucgr.K02338 Eucalyptus grandis HOM05D000032 ORTHO05D009383 1.5e-11 75.1 102 39.2
PSO339G1569 Papaver somniferum HOM05D000032 ORTHO05D009383 2.0e-11 74.7 40 75.0
DCAR_008449 Daucus carota HOM05D000032 ORTHO05D009383 3.4e-11 73.9 62 59.7
THA.LOC104823368 Tarenaya hassleriana HOM05D000032 ORTHO05D009383 3.4e-11 73.9 52 57.7
RcHm_v2.0_Chr2g0147891 Rosa chinensis HOM05D000032 ORTHO05D009383 4.4e-11 73.6 48 66.7
TAR633G1362 Trochodendron aralioides HOM05D000032 ORTHO05D009383 4.4e-11 73.6 64 54.7
unitig_0.g181 Utricularia gibba HOM05D000032 ORTHO05D009383 4.4e-11 73.6 66 53.0
Ah.15g094020 Amaranthus hybridus HOM05D000032 ORTHO05D009383 5.7e-11 73.2 67 53.7
AUR62001157 Chenopodium quinoa HOM05D000032 ORTHO05D009383 5.7e-11 73.2 69 58.0
Eucgr.L03255 Eucalyptus grandis HOM05D000032 ORTHO05D009383 5.7e-11 73.2 98 39.8
FvH4_6g35850 Fragaria vesca HOM05D000032 ORTHO05D009383 5.7e-11 73.2 48 64.6
FAN02G2103 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.7e-11 73.2 48 64.6
FAN05G0348 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.7e-11 73.2 48 64.6
FAN14G3162 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.7e-11 73.2 48 64.6
FAN14G3671 Fragaria x ananassa HOM05D000032 ORTHO05D009383 5.7e-11 73.2 48 64.6
Lsat_1_v5_gn_2_101321 Lactuca sativa HOM05D000032 ORTHO05D009383 5.7e-11 73.2 74 48.6
Atru.chr12.440 Acer truncatum HOM05D000032 ORTHO05D009383 7.5e-11 72.8 54 64.8
MELO3C014755.2 Cucumis melo HOM05D000032 ORTHO05D009383 7.5e-11 72.8 41 73.2
Glyma.02G068300 Glycine max HOM05D000032 ORTHO05D009383 7.5e-11 72.8 77 49.4
Glyma.16G149800 Glycine max HOM05D000032 ORTHO05D009383 7.5e-11 72.8 48 66.7
Nn3g18407 Nelumbo nucifera HOM05D000032 ORTHO05D009383 7.5e-11 72.8 54 63.0
QL02p068178 Quercus lobata HOM05D000032 ORTHO05D009383 7.5e-11 72.8 58 56.9
MSTRG.18394 Avicennia marina HOM05D000032 ORTHO05D009383 9.8e-11 72.4 63 58.7
Migut.D00539 Erythranthe guttata HOM05D000032 ORTHO05D009383 9.8e-11 72.4 50 62.0
GSVIVG01032945001 Vitis vinifera HOM05D007638 ORTHO05D009383 9.8e-11 72.4 53 62.3
arahy.Tifrunner.gnm1.ann1.BLPY9G Arachis hypogaea HOM05D007638 ORTHO05D009383 1.3e-10 72.0 123 37.4
Cpa.g.sc17.215 Carica papaya HOM05D000032 ORTHO05D009383 1.3e-10 72.0 51 60.8
Migut.A00966 Erythranthe guttata HOM05D007638 ORTHO05D009805 1.3e-10 72.0 59 62.7
Aa31LG5G11250 Aethionema arabicum HOM05D000032 ORTHO05D009383 2.2e-10 71.2 62 53.2
AT3G02065 Arabidopsis thaliana HOM05D000032 ORTHO05D009383 2.2e-10 71.2 48 64.6
CiPaw.14G093500 Carya illinoinensis HOM05D000032 ORTHO05D009383 2.2e-10 71.2 48 64.6
Thhalv10020567m.g Eutrema salsugineum HOM05D000032 ORTHO05D009383 2.2e-10 71.2 48 56.2
AUR62016519 Chenopodium quinoa HOM05D000032 ORTHO05D009383 2.8e-10 70.9 57 59.6
ClCG05G012450 Citrullus lanatus HOM05D000032 ORTHO05D009383 2.8e-10 70.9 80 46.2
Medtr6g033070 Medicago truncatula HOM05D000032 ORTHO05D009383 2.8e-10 70.9 85 42.4
Nitab4.5_0003436g0100 Nicotiana tabacum HOM05D000032 ORTHO05D009383 2.8e-10 70.9 54 59.3
PSO384G0785 Papaver somniferum HOM05D000032 ORTHO05D009383 2.8e-10 70.9 40 70.0
Sp3g00020 Schrenkiella parvula HOM05D000032 ORTHO05D009383 2.8e-10 70.9 48 60.4
VMungo0464G1688 Vigna mungo HOM05D000032 ORTHO05D009383 2.8e-10 70.9 54 59.3
CsaV3_3G020080 Cucumis sativus L. HOM05D000032 ORTHO05D009383 3.7e-10 70.5 40 72.5
SGA_v2.0_scaffold8G04635 Striga asiatica HOM05D000032 ORTHO05D009383 3.7e-10 70.5 59 57.6
vmacro21760 Vaccinium macrocarpon HOM05D000032 ORTHO05D009383 3.7e-10 70.5 54 57.4
arahy.Tifrunner.gnm1.ann1.8UB6M3 Arachis hypogaea HOM05D000032 ORTHO05D009383 4.9e-10 70.1 74 48.6
EL10Ac7g17945 Beta vulgaris HOM05D000032 ORTHO05D009383 4.9e-10 70.1 54 61.1
HanXRQChr14g0453351 Helianthus annuus HOM05D000032 ORTHO05D009383 4.9e-10 70.1 79 43.0
Lalb_Chr03g0043781 Lupinus albus HOM05D000032 ORTHO05D009383 4.9e-10 70.1 43 62.8
TPR.G6050 Trifolium pratense HOM05D000032 ORTHO05D009383 4.9e-10 70.1 52 55.8
ATR0824G065 Amborella trichopoda HOM05D000032 ORTHO05D009383 6.3e-10 69.7 62 51.6
Aqoxy7G03583 Aquilegia oxysepala HOM05D000032 ORTHO05D009383 6.3e-10 69.7 43 67.4
Ciclev10017882m.g Citrus clementina HOM05D000032 ORTHO05D009383 6.3e-10 69.7 61 50.8
Manes.04G096700 Manihot esculenta HOM05D000032 ORTHO05D009383 6.3e-10 69.7 53 56.6
Prupe.3G315400 Prunus persica HOM05D001005 ORTHO05D000836 6.3e-10 69.7 48 60.4
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 6.3e-10 69.7 108 38.0
Sc14g0008440 Simmondsia chinensis HOM05D000032 ORTHO05D009383 6.3e-10 69.7 56 58.9
Solyc01g006340.3 Solanum lycopersicum HOM05D000032 ORTHO05D009383 6.3e-10 69.7 51 62.7
AL3G10020 Arabidopsis lyrata HOM05D000032 ORTHO05D009383 8.3e-10 69.3 48 62.5
CSS0019503 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 8.3e-10 69.3 40 67.5
CSS0028588 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D009383 8.3e-10 69.3 40 67.5
Pp3c8_12050 Physcomitrium patens HOM05D000032 ORTHO05D009383 8.3e-10 69.3 88 40.9
Sopen01g002340 Solanum pennellii HOM05D000032 ORTHO05D009383 8.3e-10 69.3 51 62.7
PGSC0003DMG400032150 Solanum tuberosum HOM05D000032 ORTHO05D009383 8.3e-10 69.3 51 62.7
Thecc.04G052100 Theobroma cacao HOM05D000032 ORTHO05D009383 8.3e-10 69.3 44 61.4
Ca_04506_v3 Cicer arietinum L. HOM05D000032 ORTHO05D009383 1.1e-09 68.9 63 47.6
FAN09G2555 Fragaria x ananassa HOM05D000032 ORTHO05D009383 1.1e-09 68.9 48 62.5
Potri.014G140100 Populus trichocarpa HOM05D000032 ORTHO05D009383 1.1e-09 68.9 47 57.4
PGR044G2709 Punica granatum HOM05D000032 ORTHO05D009383 1.1e-09 68.9 59 52.5
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 1.1e-09 68.9 40 67.5
CBR_g3873 Chara braunii HOM05D000032 ORTHO05D009383 1.4e-09 68.6 40 65.0
Hma1.2p1_0098F.1_g048240 Hydrangea macrophylla HOM05D000032 ORTHO05D009383 1.4e-09 68.6 40 67.5
Lj1A470G20 Lonicera japonica HOM05D000032 ORTHO05D009383 1.4e-09 68.6 70 51.4
Lj1A478G35 Lonicera japonica HOM05D000032 ORTHO05D009383 1.4e-09 68.6 70 51.4
arahy.Tifrunner.gnm1.ann1.U3NDHF Arachis hypogaea HOM05D000032 ORTHO05D009383 1.8e-09 68.2 48 64.6
Cfa010055 Carpinus fangiana HOM05D001005 ORTHO05D000836 1.8e-09 68.2 40 70.0
Gohir.A10G069700 Gossypium hirsutum HOM05D000032 ORTHO05D009383 1.8e-09 68.2 78 42.3
Zm00001eb235630 Zea mays HOM05D000032 ORTHO05D009383 1.8e-09 68.2 40 67.5
Carub.0003s0002 Capsella rubella HOM05D000032 ORTHO05D009383 2.4e-09 67.8 40 67.5
CDE07G0397 Ceratophyllum demersum HOM05D000032 ORTHO05D009383 2.4e-09 67.8 40 67.5
Lj3g0015614 Lotus japonicus HOM05D000032 ORTHO05D009383 2.4e-09 67.8 57 52.6
MD17G1003800 Malus domestica HOM05D000032 ORTHO05D009383 2.4e-09 67.8 48 60.4
Peaxi162Scf00192g00012 Petunia axillaris HOM05D000032 ORTHO05D009383 2.4e-09 67.8 56 57.1
Psat1g014560 Pisum sativum HOM05D000032 ORTHO05D009383 2.4e-09 67.8 51 54.9
Duzib187G1127 Durio zibethinus HOM05D000032 ORTHO05D009383 3.1e-09 67.4 44 61.4
Gohir.D10G081800 Gossypium hirsutum HOM05D000032 ORTHO05D009383 3.1e-09 67.4 48 58.3
MBI11_g17278_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D009383 3.1e-09 67.4 43 65.1
Gorai.011G088700 Gossypium raimondii HOM05D000032 ORTHO05D009383 4.1e-09 67.0 47 55.3
COL.COLO4_13406 Corchorus olitorius HOM05D000032 ORTHO05D009383 5.4e-09 66.6 40 65.0
ECA238G2389 Erigeron canadensis HOM05D000032 ORTHO05D009383 7.0e-09 66.2 78 46.2
Mapoly0135s0036 Marchantia polymorpha HOM05D000032 ORTHO05D009383 7.0e-09 66.2 98 36.7
Cc01_g03330 Coffea canephora HOM05D000032 ORTHO05D009383 1.2e-08 65.5 66 48.5
CAN.G140.9 Capsicum annuum HOM05D000032 ORTHO05D009383 2.7e-08 64.3 43 62.8
SHI50144 Sapria himalayana HOM05D000032 ORTHO05D009383 3.5e-08 63.9 66 43.9
SMO201G0222 Selaginella moellendorffii HOM05D000032 ORTHO05D009383 7.7e-08 62.8 76 43.4
Actinidia01839 Actinidia chinensis HOM05D000032 ORTHO05D009383 1.3e-07 62.0 103 38.8
Haze_14989 Corylus avellana HOM05D000032 ORTHO05D009383 7.3e-06 56.2 49 57.1


User provided reference genes

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