Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 1.2e-39 166.0 83 100.0
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 8.5e-25 116.7 58 98.3
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 8.5e-25 116.7 58 98.3
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 8.5e-25 116.7 58 98.3
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 1.9e-24 115.5 58 96.6
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 1.9e-24 115.5 58 96.6
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 1.9e-24 115.5 58 96.6
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 3.2e-24 114.8 58 96.6
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 9.4e-24 113.2 56 96.4
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 1.2e-23 112.8 58 94.8
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 1.6e-23 112.5 57 94.7
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 3.6e-23 111.3 58 93.1
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 6.1e-23 110.5 57 93.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.0e-21 105.5 58 86.2
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.0e-21 105.5 58 86.2
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 2.0e-21 105.5 58 86.2
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 2.0e-21 105.5 58 86.2
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 3.3e-21 104.8 58 86.2
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.7e-21 103.2 70 70.0
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 1.7e-20 102.4 58 82.8
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 2.2e-20 102.1 58 82.8
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 3.7e-20 101.3 58 82.8
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 3.7e-20 101.3 58 81.0
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-20 101.3 58 81.0
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-20 101.3 58 81.0
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.7e-20 101.3 58 81.0
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 6.3e-20 100.5 58 81.0
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 1.1e-19 99.8 58 79.3
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 2.4e-19 98.6 58 79.3
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 9.1e-19 96.7 61 78.7
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 1.2e-18 96.3 58 77.6
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 1.6e-18 95.9 59 79.7
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 2.7e-18 95.1 53 84.9
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 3.5e-18 94.7 59 79.7
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 3.5e-18 94.7 59 79.7
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 4.5e-18 94.4 78 66.7
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 7.7e-18 93.6 59 79.7
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 7.7e-18 93.6 59 79.7
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 7.7e-18 93.6 59 79.7
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.0e-17 93.2 56 82.1
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.0e-17 93.2 56 82.1
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 1.3e-17 92.8 59 78.0
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 1.3e-17 92.8 60 75.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 1.3e-17 92.8 60 78.3
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 1.7e-17 92.4 59 78.0
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 2.2e-17 92.0 59 76.3
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 2.2e-17 92.0 60 75.0
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 2.9e-17 91.7 59 78.0
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.8e-17 91.3 59 76.3
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 3.8e-17 91.3 59 76.3
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 3.8e-17 91.3 60 78.3
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 6.5e-17 90.5 56 78.6
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 8.5e-17 90.1 56 80.4
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 8.5e-17 90.1 59 76.3
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.9e-16 89.0 60 75.0
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.9e-16 89.0 60 75.0
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 5.5e-16 87.4 62 69.4
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 5.5e-16 87.4 58 72.4
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 7.2e-16 87.0 56 75.0
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 7.2e-16 87.0 60 73.3
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.6e-15 85.9 60 73.3
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.6e-15 85.9 56 75.0
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.6e-15 85.9 56 75.0
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.1e-15 85.5 61 72.1
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.1e-15 85.5 72 62.5
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 2.7e-15 85.1 71 63.4
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 2.7e-15 85.1 58 70.7
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 2.7e-15 85.1 72 62.5
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 2.7e-15 85.1 71 63.4
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 3.6e-15 84.7 61 70.5
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 3.6e-15 84.7 61 70.5
Sopen04g005240 Solanum pennellii HOM05D005020 ORTHO05D006017 4.7e-15 84.3 72 61.1
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 1.4e-14 82.8 61 68.9
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 1.4e-14 82.8 62 67.7
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 1.8e-14 82.4 84 58.3
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.3e-14 82.0 61 68.9
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 2.3e-14 82.0 61 68.9
FvH4_7g00350 Fragaria vesca HOM05D005020 ORTHO05D006017 3.0e-14 81.6 62 67.7
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 3.0e-14 81.6 61 68.9
PGSC0003DMG400012700 Solanum tuberosum HOM05D005020 ORTHO05D006017 5.2e-14 80.9 61 68.9
FAN22G0856 Fragaria x ananassa HOM05D005020 ORTHO05D006017 6.8e-14 80.5 46 78.3
Solyc04g010100.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 6.8e-14 80.5 61 68.9
Solyc04g016390.2 Solanum lycopersicum HOM05D005020 ORTHO05D006017 6.8e-14 80.5 61 68.9
PGSC0003DMG400011474 Solanum tuberosum HOM05D005020 ORTHO05D006017 6.8e-14 80.5 61 68.9
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 8.8e-14 80.1 54 72.2
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 8.8e-14 80.1 50 80.0
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 1.2e-13 79.7 58 67.2
FAN06G3024 Fragaria x ananassa HOM05D005020 ORTHO05D006017 2.0e-13 79.0 58 69.0
Pp3c25_230 Physcomitrium patens HOM05D005020 ORTHO05D006017 5.7e-13 77.4 56 71.4
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 3.7e-12 74.7 59 59.3
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 4.8e-12 74.3 55 69.1
MD11G1225600 Malus domestica HOM05D005020 ORTHO05D006017 8.3e-12 73.6 58 56.9
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 1.4e-11 72.8 48 68.8
Peaxi162Scf00048g00206 Petunia axillaris HOM05D005020 ORTHO05D006017 3.1e-11 71.6 51 68.6
Medtr1g011670 Medicago truncatula HOM05D005020 ORTHO05D006017 4.1e-11 71.2 38 89.5
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 7.0e-11 70.5 53 66.0
SMO164G0143 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 7.7e-10 67.0 59 57.6
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 1.7e-09 65.9 44 68.2
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 2.9e-09 65.1 59 59.3
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 6.5e-09 63.9 55 54.5
Nitab4.5_0002081g0130 Nicotiana tabacum HOM05D005020 ORTHO05D006017 6.5e-09 63.9 47 68.1
Cre16.g653601 Chlamydomonas reinhardtii HOM05D005020 ORTHO05D006017 8.5e-09 63.5 55 61.8
THA.LOC104802731 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 2.5e-08 62.0 57 61.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 4.2e-08 61.2 55 54.5
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-07 59.7 44 61.4
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-07 59.7 44 61.4
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 1.2e-07 59.7 56 53.6
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.6e-07 59.3 50 54.0
SGA_v2.0_scaffold371G50143 Striga asiatica HOM05D005020 ORTHO05D006017 2.1e-07 58.9 49 59.2
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 2.1e-07 58.9 54 51.9
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 2.7e-07 58.5 55 50.9
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 6.1e-07 57.4 44 56.8
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 6.1e-07 57.4 63 41.3
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 8.0e-07 57.0 52 53.8
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 1.0e-06 56.6 44 59.1
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 1.8e-06 55.8 48 52.1
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 3.0e-06 55.1 52 51.9
Ca_29279_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 6.8e-06 53.9 48 58.3
SMO196G0139 Selaginella moellendorffii HOM05D005020 ORTHO05D006017 6.8e-06 53.9 54 50.0


User provided reference genes

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