Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1763.0 853 100.0
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1545.8 854 86.2
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1541.9 854 86.1
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1540.4 853 85.5
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1523.5 854 85.0
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1505.0 854 84.0
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1487.2 854 83.7
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1469.9 855 82.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1468.8 857 82.1
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1459.9 854 81.9
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1451.4 857 81.4
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1429.5 855 80.9
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1422.9 854 80.3
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1405.6 855 78.6
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1359.7 853 76.9
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1341.6 884 74.8
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1300.0 851 72.0
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1285.8 851 72.5
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1282.7 755 79.5
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1272.3 852 71.8
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1269.2 850 71.3
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1251.5 849 69.4
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1247.3 849 68.6
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1245.0 849 68.1
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1243.0 852 68.2
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 857 68.6
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1238.0 849 69.5
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1237.6 854 69.2
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1236.9 850 69.3
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1236.5 854 68.3
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1236.1 849 69.5
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1232.2 852 69.5
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1231.9 850 69.5
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1229.9 861 68.6
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1228.4 849 68.2
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1226.5 856 67.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1223.0 856 67.4
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1221.1 851 67.8
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1217.2 856 66.9
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 859 68.3
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1214.9 850 68.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1213.7 869 67.9
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1212.6 853 67.2
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1205.7 887 65.6
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1203.3 885 65.4
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1199.1 850 66.9
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1198.3 858 66.4
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1193.3 970 61.2
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 811 70.8
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1191.8 826 68.9
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1191.4 852 65.8
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 852 67.0
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1189.5 811 68.9
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1182.2 854 66.5
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1181.4 862 67.2
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1179.9 852 66.7
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1171.4 852 66.9
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 859 66.0
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1169.5 808 68.8
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 859 65.3
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 851 64.5
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 850 64.1
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1152.9 853 64.9
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1152.5 850 65.6
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1150.6 852 64.0
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1146.0 848 64.6
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1144.8 851 64.5
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1135.6 854 63.1
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1132.9 853 64.6
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1130.2 838 64.1
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1124.4 861 63.9
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1124.0 856 63.3
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1122.1 853 62.6
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1119.0 877 62.7
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1115.9 854 62.4
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1115.1 856 62.9
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 852 62.1
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1109.0 857 62.5
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1108.6 855 62.0
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1108.2 888 60.6
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1099.3 852 62.2
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1097.8 858 61.9
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1094.7 849 62.2
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1091.6 876 60.6
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1086.2 889 59.7
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1082.4 856 60.5
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1077.8 849 61.4
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 871 59.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.5e-310 1069.3 776 64.9
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 3.7e-309 1064.7 764 66.8
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.1e-308 1063.1 856 60.3
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 2.7e-307 1058.5 857 58.9
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 3.0e-306 1055.0 729 68.4
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 3.4e-302 1041.6 802 61.5
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 5.4e-300 1034.2 842 58.9
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 5.4e-300 1034.2 770 62.2
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 7.3e-297 1023.8 781 61.5
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 1.6e-296 1022.7 720 67.1
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 2.1e-296 1022.3 852 59.5
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 3.4e-294 1015.0 862 58.8
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 9.9e-294 1013.4 872 57.2
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 2.2e-293 1012.3 772 61.4
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 4.9e-293 1011.1 771 60.7
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 9.2e-292 1006.9 769 60.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 1.2e-291 1006.5 768 60.4
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 2.1e-291 1005.7 772 60.9
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 2.1e-291 1005.7 769 60.5
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 8.7e-290 1000.3 840 57.4
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 1.6e-288 996.1 803 59.2
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 2.0e-286 989.2 864 55.9
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 4.4e-286 988.0 773 59.8
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 3.8e-285 984.9 775 59.7
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.8e-285 984.9 853 56.2
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.6e-280 969.5 774 59.6
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.0e-274 950.3 734 61.0
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 1.6e-272 943.0 859 55.9
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 3.8e-261 905.2 805 56.0
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.5e-249 866.7 857 50.8
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 6.9e-247 857.8 649 63.8
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 3.3e-241 839.0 831 49.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.8e-240 835.9 779 53.0
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 9.1e-239 830.9 599 68.8
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 4.2e-236 822.0 849 47.2
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 2.6e-233 812.8 799 50.9
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.1e-227 791.6 438 83.3
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 1.7e-224 783.5 790 49.4
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 1.6e-222 776.9 500 75.0
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.0e-222 776.5 477 78.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.2e-221 773.1 629 60.1
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 1.2e-209 734.2 659 56.8
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 7.3e-204 714.9 778 48.2
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 7.3e-204 714.9 432 77.8
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.5e-201 704.9 471 68.6
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.6e-198 697.2 434 73.3
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.2e-195 687.6 722 48.8
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 4.6e-190 669.1 406 80.5
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.1e-171 607.1 667 49.2
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.3e-168 597.8 575 51.5
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 5.1e-165 585.9 868 38.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 6.7e-157 558.9 325 78.8
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-145 521.5 583 49.2
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 9.0e-138 495.4 778 39.6
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 2.4e-130 470.7 436 58.3
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 3.1e-130 470.3 269 79.9
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.1e-114 417.2 338 59.2
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 2.0e-108 397.9 420 52.9
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.8e-106 391.3 385 56.1
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 7.7e-105 386.0 399 53.9
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 9.2e-90 335.9 242 65.3
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.9e-74 285.0 167 76.6
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 4.6e-73 280.4 547 32.9
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 1.7e-72 278.5 823 28.4
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 1.3e-67 262.3 202 59.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 1.9e-63 248.4 205 59.0
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 7.6e-52 209.9 139 69.1
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 5.1e-48 197.2 117 74.4
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 9.3e-42 176.4 193 48.2
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.7e-40 170.2 100 75.0
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 3.0e-32 144.8 84 84.5
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 5.7e-31 140.6 198 41.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 1.9e-26 125.6 95 62.1
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 3.9e-24 117.9 88 64.8
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 3.3e-23 114.8 69 76.8
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.5e-20 105.9 75 77.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 4.5e-20 104.4 59 89.8
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 1.0e-19 103.2 124 45.2
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 6.5e-19 100.5 84 53.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 1.2e-17 96.3 95 53.7
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 5.1e-16 90.9 77 51.9
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 6.7e-16 90.5 61 67.2
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.8e-13 82.4 44 77.3
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 1.2e-12 79.7 62 59.7
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.6e-12 78.6 40 82.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-12 77.8 98 42.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 4.5e-12 77.8 96 43.8
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 7.7e-12 77.0 44 79.5


User provided reference genes

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