Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 0.0e+00 3664.8 1839 100.0
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 0.0e+00 2951.0 1844 81.0
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 0.0e+00 2916.3 1839 80.2
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 2853.9 1841 77.9
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 2808.1 1883 76.7
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 0.0e+00 2769.6 1840 77.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 2587.4 1841 72.6
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 0.0e+00 2577.4 1841 72.5
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 0.0e+00 2257.3 1432 79.0
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 0.0e+00 2201.8 1416 78.3
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 0.0e+00 2107.8 1852 59.7
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 0.0e+00 2097.8 2059 55.6
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 0.0e+00 2091.6 1852 59.9
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 0.0e+00 2090.1 1861 59.0
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 0.0e+00 2086.2 1849 59.3
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 0.0e+00 2072.4 1866 58.5
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 0.0e+00 2070.4 1851 59.5
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 0.0e+00 2068.1 1838 58.6
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 0.0e+00 2059.3 1845 58.6
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 0.0e+00 2048.1 1847 58.3
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 0.0e+00 2018.4 1681 62.8
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 0.0e+00 2008.0 1857 58.1
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 0.0e+00 1995.7 1880 57.3
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 0.0e+00 1967.2 1861 57.0
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 0.0e+00 1963.3 1876 56.2
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 0.0e+00 1936.0 1842 56.1
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 0.0e+00 1906.0 1847 55.8
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1896.7 1866 55.7
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 0.0e+00 1890.2 1852 55.5
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 0.0e+00 1889.4 1866 55.4
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1873.6 1853 54.3
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1859.3 1826 55.3
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 0.0e+00 1847.8 1842 53.0
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 0.0e+00 1845.1 1848 53.2
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 0.0e+00 1841.6 1843 53.3
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 0.0e+00 1839.7 1847 53.9
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1828.5 1847 53.4
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 0.0e+00 1827.8 1855 53.5
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 0.0e+00 1827.0 1846 53.1
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 0.0e+00 1809.3 1847 53.5
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 0.0e+00 1793.9 1847 52.5
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 0.0e+00 1790.0 1842 52.7
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 0.0e+00 1788.1 1861 51.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 0.0e+00 1786.2 1844 52.6
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 0.0e+00 1782.7 1847 52.1
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 0.0e+00 1779.2 1521 61.4
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 0.0e+00 1778.5 1850 52.4
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 0.0e+00 1768.8 1841 52.1
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 0.0e+00 1768.4 1748 53.4
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 0.0e+00 1765.4 1551 60.2
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 0.0e+00 1765.0 1866 53.2
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 0.0e+00 1761.1 1856 52.4
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 0.0e+00 1760.7 1915 50.5
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 0.0e+00 1758.8 1747 54.6
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 0.0e+00 1757.3 1852 51.6
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1751.5 1845 51.6
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 0.0e+00 1751.1 1846 51.3
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 0.0e+00 1749.6 1847 51.7
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1746.9 1840 51.8
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 0.0e+00 1746.1 1941 50.8
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 0.0e+00 1743.8 1844 50.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 0.0e+00 1743.0 1831 51.5
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 0.0e+00 1737.6 1868 50.7
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 0.0e+00 1721.1 1831 51.2
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 0.0e+00 1692.9 1857 51.1
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 0.0e+00 1685.6 1860 49.6
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 0.0e+00 1672.5 1847 50.4
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 0.0e+00 1667.1 1845 49.8
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 0.0e+00 1651.7 1661 53.9
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1599.3 1774 50.1
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 0.0e+00 1580.8 1850 48.6
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 0.0e+00 1565.8 1550 55.0
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 0.0e+00 1540.4 1600 51.4
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 0.0e+00 1489.2 1852 46.2
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 0.0e+00 1423.7 1883 43.6
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 0.0e+00 1404.8 1143 63.0
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 0.0e+00 1344.7 920 75.2
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 0.0e+00 1301.6 1509 49.7
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 0.0e+00 1262.7 1446 48.7
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 0.0e+00 1205.3 1001 62.8
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 0.0e+00 1167.1 1065 59.7
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 0.0e+00 1086.6 1404 43.6
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 0.0e+00 1081.6 1773 38.7
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 1.3e-306 1057.4 1944 35.8
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 2.1e-301 1040.0 1361 45.4
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-298 1030.8 957 57.3
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.0e-283 980.3 1018 52.5
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 5.5e-273 945.7 1485 40.7
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 5.5e-265 919.1 796 60.1
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 6.9e-252 875.5 804 60.0
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 1.2e-203 715.3 513 72.5
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 8.6e-202 709.1 747 55.6
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 8.1e-192 676.0 407 84.3
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.4e-191 675.2 404 84.2
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 9.2e-180 636.0 391 82.9
Haze_08368 Corylus avellana HOM05D003893 ORTHO05D005167 3.8e-141 507.7 477 59.1
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 3.3e-137 494.6 569 46.9
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.0e-133 483.0 408 62.5
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 5.1e-130 470.7 611 44.0
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 5.1e-130 470.7 432 60.0
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 4.8e-128 464.2 288 82.3
Psat7g156960 Pisum sativum HOM05D003893 ORTHO05D005167 7.2e-124 450.3 601 47.6
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 3.3e-121 441.4 312 72.8
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 9.4e-116 423.3 335 64.8
SalBow1G6370 Salvia bowleyana HOM05D003893 ORTHO05D005167 3.3e-113 414.8 609 39.4
CDE12G0047 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 6.8e-106 390.6 549 41.9
Haze_08365 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-97 362.5 369 52.8
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 2.4e-95 355.5 477 42.3
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.0e-86 325.9 508 40.6
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 2.7e-86 325.5 310 57.4
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 5.0e-85 321.2 584 35.4
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 1.2e-83 316.6 340 51.2
Haze_08366 Corylus avellana HOM05D003893 ORTHO05D005167 2.1e-78 299.3 253 59.7
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.1e-75 289.3 930 26.7
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 4.0e-74 285.0 181 79.0
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 6.8e-74 284.3 494 37.4
SEGI_27963 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 7.1e-71 274.2 508 34.4
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 3.0e-69 268.9 395 41.3
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 5.1e-69 268.1 180 72.8
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.2e-67 263.5 213 62.0
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 4.9e-64 251.5 374 38.8
VMungo0251G2570 Vigna mungo HOM05D003893 ORTHO05D005167 1.1e-63 250.4 137 87.6
arahy.Tifrunner.gnm1.ann1.NA56E9 Arachis hypogaea HOM05D003893 ORTHO05D005167 3.1e-58 232.3 142 80.3
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 9.9e-57 227.3 177 62.1
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 2.9e-56 225.7 732 25.7
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 1.0e-53 217.2 297 41.8
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.0e-53 215.7 671 27.7
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 2.6e-49 202.6 108 91.7
COL.COLO4_04209 Corchorus olitorius HOM05D003893 ORTHO05D005167 5.8e-49 201.4 182 58.8
CDE12G0397 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 6.4e-48 198.0 399 33.6
CBR_g21120 Chara braunii HOM05D003893 ORTHO05D005167 4.2e-47 195.3 905 24.9
Nitab4.5_0026472g0010 Nicotiana tabacum HOM05D003893 ORTHO05D005167 8.7e-45 187.6 429 31.7
arahy.Tifrunner.gnm1.ann1.L0U5DT Arachis hypogaea HOM05D003893 ORTHO05D005167 5.6e-44 184.9 167 58.7
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 9.6e-44 184.1 112 82.1
COL.COLO4_04210 Corchorus olitorius HOM05D003893 ORTHO05D005167 9.3e-39 167.5 154 61.0
CBR_g21119 Chara braunii HOM05D000019 ORTHO05D005167 6.7e-37 161.4 216 42.6
arahy.Tifrunner.gnm1.ann1.FKEW18 Arachis hypogaea HOM05D003893 ORTHO05D005167 9.6e-36 157.5 136 61.0
arahy.Tifrunner.gnm1.ann1.LQQ75E Arachis hypogaea HOM05D003893 ORTHO05D005167 3.4e-33 149.1 85 88.2
arahy.Tifrunner.gnm1.ann1.MLK8WM Arachis hypogaea HOM05D003893 ORTHO05D005167 7.6e-33 147.9 85 88.2
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 2.2e-32 146.4 153 45.8
Cpa.g.sc98.30 Carica papaya HOM05D003893 ORTHO05D005167 2.3e-29 136.3 152 49.3
Os10g0142900 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 8.7e-29 134.4 179 43.6
arahy.Tifrunner.gnm1.ann1.9S00H1 Arachis hypogaea HOM05D003893 ORTHO05D005167 2.4e-26 126.3 74 85.1
Gohir.D02G139050 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.4e-26 126.3 82 74.4
Gorai.005G158100 Gossypium raimondii HOM05D003893 ORTHO05D005167 4.5e-25 122.1 82 72.0
Gohir.D11G202680 Gossypium hirsutum HOM05D003893 ORTHO05D005167 5.9e-25 121.7 82 72.0
SEGI_19363 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 5.5e-23 115.2 130 52.3
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.9e-21 109.0 55 98.2
COL.COLO4_00031 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.7e-21 108.2 128 49.2
Gohir.A11G196650 Gossypium hirsutum HOM05D003893 ORTHO05D005167 8.8e-21 107.8 82 63.4
arahy.Tifrunner.gnm1.ann1.T8TVPL Arachis hypogaea HOM05D000826 ORTHO05D006448 5.7e-20 105.1 70 78.6
arahy.Tifrunner.gnm1.ann1.QNR9EZ Arachis hypogaea HOM05D000826 ORTHO05D006448 1.1e-18 100.9 70 77.1
arahy.Tifrunner.gnm1.ann1.UB4SVV Arachis hypogaea HOM05D003893 ORTHO05D005167 6.9e-18 98.2 64 79.7
ATR0665G236 Amborella trichopoda HOM05D003893 ORTHO05D005167 1.3e-16 94.0 157 36.3
arahy.Tifrunner.gnm1.ann1.BV66IC Arachis hypogaea HOM05D000826 ORTHO05D006448 8.5e-16 91.3 52 88.5
arahy.Tifrunner.gnm1.ann1.T26UD0 Arachis hypogaea HOM05D000826 ORTHO05D006448 8.5e-16 91.3 52 88.5
arahy.Tifrunner.gnm1.ann1.V6RYFZ Arachis hypogaea HOM05D000826 ORTHO05D006448 8.5e-16 91.3 52 88.5
SEGI_09425 Sequoiadendron giganteum HOM05D003893 ORTHO05D005167 1.1e-15 90.9 169 35.5
arahy.Tifrunner.gnm1.ann1.AZ80GT Arachis hypogaea HOM05D000826 ORTHO05D006448 4.2e-15 89.0 48 91.7
Gorai.002G189000 Gossypium raimondii HOM05D003893 ORTHO05D047700 3.6e-14 85.9 73 60.3
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 1.0e-13 84.3 118 41.5
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 1.0e-13 84.3 118 41.5
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 3.9e-13 82.4 83 48.2
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 3.3e-12 79.3 108 41.7
CAN.G466.3 Capsicum annuum HOM05D003893 ORTHO05D005167 5.7e-12 78.6 62 56.5
Gohir.D01G152650 Gossypium hirsutum HOM05D003893 ORTHO05D047700 4.8e-11 75.5 73 54.8
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 3.1e-10 72.8 201 29.4
Psat1g032760 Pisum sativum HOM05D003893 ORTHO05D005167 7.7e-09 68.2 46 71.7
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 2.2e-08 66.6 82 50.0
arahy.Tifrunner.gnm1.ann1.3X15P1 Arachis hypogaea HOM05D000826 ORTHO05D006448 1.4e-07 63.9 35 85.7
SEGI_26572 Sequoiadendron giganteum HOM05D003893 ORTHO05D011582 1.9e-07 63.5 179 31.8
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 2.5e-07 63.2 81 48.1
BcaC09g49608 Brassica carinata HOM05D000205 ORTHO05D017260 3.2e-07 62.8 71 47.9
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 7.2e-07 61.6 76 43.4
BcaC08g45749 Brassica carinata HOM05D003893 ORTHO05D021800 2.1e-06 60.1 203 25.6
CSS0024237 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 6.1e-06 58.5 132 30.3


User provided reference genes

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