Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0017968 Lotus japonicus HOM05D003674 ORTHO05D004226 2.5e-40 168.3 85 100.0
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 9.7e-16 86.7 47 89.4
Lj3g0020169 Lotus japonicus HOM05D003674 ORTHO05D004226 6.3e-15 84.0 42 95.2
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 1.2e-13 79.7 47 78.7
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.2e-13 79.7 47 78.7
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 3.4e-13 78.2 47 80.9
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 1.0e-12 76.6 47 76.6
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.0e-12 76.6 47 80.9
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 2.9e-12 75.1 47 78.7
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 3.8e-12 74.7 47 74.5
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 5.0e-12 74.3 47 78.7
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 8.5e-12 73.6 47 74.5
CSS0005418 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.1e-11 73.2 47 70.2
CSS0020583 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 1.1e-11 73.2 47 70.2
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.1e-11 73.2 47 74.5
Eucgr.K01031 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.4e-11 72.8 47 72.3
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 1.9e-11 72.4 47 72.3
Eucgr.K01029 Eucalyptus grandis HOM05D003674 ORTHO05D004226 1.9e-11 72.4 47 74.5
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 2.5e-11 72.0 47 70.2
Gohir.A03G156500 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.2e-11 71.6 47 70.2
Gohir.D02G179632 Gossypium hirsutum HOM05D003674 ORTHO05D004226 3.2e-11 71.6 47 70.2
Gorai.005G201400 Gossypium raimondii HOM05D003674 ORTHO05D004226 3.2e-11 71.6 47 70.2
Haze_13163 Corylus avellana HOM05D003674 ORTHO05D004226 5.5e-11 70.9 47 68.1
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 7.2e-11 70.5 47 66.0
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 7.2e-11 70.5 47 66.0
Thecc.02G180000 Theobroma cacao HOM05D003674 ORTHO05D004226 7.2e-11 70.5 47 72.3
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 9.4e-11 70.1 47 68.1
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.2e-10 69.7 47 68.1
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.2e-10 69.7 47 66.0
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.6e-10 69.3 47 68.1
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 1.6e-10 69.3 47 68.1
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 66.0
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 66.0
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 66.0
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 66.0
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 66.0
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 66.0
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 2.1e-10 68.9 47 61.7
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 2.7e-10 68.6 47 66.0
Eucgr.K01030 Eucalyptus grandis HOM05D003674 ORTHO05D004226 2.7e-10 68.6 79 50.6
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 2.7e-10 68.6 47 66.0
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 2.7e-10 68.6 47 61.7
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 66.0
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 63.8
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 63.8
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 3.6e-10 68.2 47 63.8
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 63.8
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 63.8
Cfa014617 Carpinus fangiana HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 66.0
ClCG07G002890 Citrullus lanatus HOM05D003674 ORTHO05D004226 3.6e-10 68.2 47 68.1
vmacro12304 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 4.6e-10 67.8 47 61.7
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 7.9e-10 67.0 47 57.4
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 7.9e-10 67.0 47 59.6
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 7.9e-10 67.0 47 59.6
FAN05G0320 Fragaria x ananassa HOM05D000230 ORTHO05D000176 7.9e-10 67.0 47 59.6
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 7.9e-10 67.0 47 63.8
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 59.6
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 61.7
Cpa.g.sc848.1 Carica papaya HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 63.8
MELO3C018734.2 Cucumis melo HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 68.1
CsaV3_7G004450 Cucumis sativus L. HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 68.1
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 59.6
Potri.013G131100 Populus trichocarpa HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 61.7
QL08p038913 Quercus lobata HOM05D003674 ORTHO05D004226 1.4e-09 66.2 47 61.7
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 1.8e-09 65.9 47 63.8
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.8e-09 65.9 47 57.4
QL08p038841 Quercus lobata HOM05D003674 ORTHO05D004226 1.8e-09 65.9 47 61.7
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 1.8e-09 65.9 47 66.0
Ah.01g004260 Amaranthus hybridus HOM05D003674 ORTHO05D004226 2.3e-09 65.5 47 59.6
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 2.3e-09 65.5 47 59.6
Sabra13G0110800 Salix brachista HOM05D003674 ORTHO05D004226 2.3e-09 65.5 47 61.7
arahy.Tifrunner.gnm1.ann1.Y3H9JV Arachis hypogaea HOM05D003674 ORTHO05D004226 3.0e-09 65.1 39 76.9
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 3.0e-09 65.1 47 61.7
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 3.9e-09 64.7 47 59.6
Sabra13G0110700 Salix brachista HOM05D003674 ORTHO05D004226 3.9e-09 64.7 47 57.4
CiPaw.04G126100 Carya illinoinensis HOM05D003674 ORTHO05D004226 5.1e-09 64.3 47 57.4
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 6.7e-09 63.9 50 62.0
Duzib132G0159 Durio zibethinus HOM05D003674 ORTHO05D004226 8.8e-09 63.5 47 66.0
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 8.8e-09 63.5 47 57.4
AUR62037356 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.1e-08 63.2 47 57.4
AUR62042592 Chenopodium quinoa HOM05D003674 ORTHO05D004226 1.1e-08 63.2 47 57.4
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 1.5e-08 62.8 47 57.4
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.5e-08 62.0 47 55.3
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.5e-08 62.0 47 57.4
MSTRG.14344 Avicennia marina HOM05D003674 ORTHO05D004226 3.3e-08 61.6 47 61.7
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 4.3e-08 61.2 47 57.4
DCAR_019181 Daucus carota HOM05D003674 ORTHO05D004226 4.3e-08 61.2 48 60.4
MBI06_g04180_MAGBIO Magnolia biondii HOM05D003674 ORTHO05D004226 4.3e-08 61.2 47 57.4
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 4.3e-08 61.2 47 59.6
Oeu010989.1 Olea europaea HOM05D003674 ORTHO05D004226 5.7e-08 60.8 47 59.6
Migut.H01179 Erythranthe guttata HOM05D003674 ORTHO05D004226 7.4e-08 60.5 47 59.6
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 7.4e-08 60.5 47 55.3
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 7.4e-08 60.5 47 53.2
MSTRG.14340 Avicennia marina HOM05D003674 ORTHO05D004226 9.7e-08 60.1 47 59.6
QL08p038784 Quercus lobata HOM05D003674 ORTHO05D004226 9.7e-08 60.1 46 56.5
Nitab4.5_0000512g0010 Nicotiana tabacum HOM05D003674 ORTHO05D004226 1.3e-07 59.7 47 53.2
SHI10407 Sapria himalayana HOM05D003674 ORTHO05D004226 1.3e-07 59.7 46 58.7
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.7e-07 59.3 47 57.4
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 1.7e-07 59.3 47 57.4
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.7e-07 59.3 47 51.1
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 2.2e-07 58.9 47 55.3
PGR142G3148 Punica granatum HOM05D003674 ORTHO05D004226 2.2e-07 58.9 47 55.3
TAR624G0523 Trochodendron aralioides HOM05D003674 ORTHO05D004226 2.2e-07 58.9 84 36.9
Hma1.2p1_1937F.1_g308270 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 2.8e-07 58.5 47 53.2
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 2.8e-07 58.5 47 53.2
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 2.8e-07 58.5 47 48.9
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 2.8e-07 58.5 69 40.6
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 3.7e-07 58.2 47 53.2
ATR0737G001 Amborella trichopoda HOM05D003674 ORTHO05D004226 4.8e-07 57.8 48 50.0
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 4.8e-07 57.8 47 51.1
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 8.2e-07 57.0 48 54.2
SEGI_19203 Sequoiadendron giganteum HOM05D003674 ORTHO05D004226 8.2e-07 57.0 47 48.9
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 1.1e-06 56.6 47 46.8
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.8e-06 55.8 47 46.8
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 1.8e-06 55.8 47 53.2
Hma1.2p1_1836F.1_g304700 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.3e-06 54.3 47 48.9
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 5.3e-06 54.3 49 55.1
Peaxi162Scf00132g00118 Petunia axillaris HOM05D003674 ORTHO05D004226 9.1e-06 53.5 47 48.9


User provided reference genes

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