Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016796 Lotus japonicus HOM05D000198 ORTHO05D023800 9.1e-47 189.9 96 100.0
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 2.3e-26 122.1 98 69.4
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 3.4e-25 118.2 98 66.3
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 7.5e-25 117.1 98 65.3
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 7.5e-25 117.1 98 64.3
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 1.3e-24 116.3 98 65.3
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 1.7e-24 115.9 98 65.3
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 2.2e-24 115.5 98 65.3
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 4.9e-24 114.4 98 63.3
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 7.1e-23 110.5 98 61.2
Lalb_Chr20g0108421 Lupinus albus HOM05D000198 ORTHO05D005702 1.2e-22 109.8 98 59.2
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 2.1e-22 109.0 98 60.2
Lalb_Chr25g0284351 Lupinus albus HOM05D000198 ORTHO05D005702 1.0e-21 106.7 98 58.2
Nitab4.5_0013063g0020 Nicotiana tabacum HOM05D000198 ORTHO05D005702 1.3e-21 106.3 98 58.2
Duzib213G0040 Durio zibethinus HOM05D000198 ORTHO05D005702 3.9e-21 104.8 98 58.2
Nitab4.5_0000194g0150 Nicotiana tabacum HOM05D000198 ORTHO05D005702 3.9e-21 104.8 98 57.1
CANSAT56G2629 Cannabis sativa HOM05D000198 ORTHO05D005702 8.6e-21 103.6 98 58.2
CANSAT56G4341 Cannabis sativa HOM05D000198 ORTHO05D005702 8.6e-21 103.6 98 58.2
Dinv42461 Davidia involucrata HOM05D000198 ORTHO05D005702 8.6e-21 103.6 98 57.1
MD10G1216600 Malus domestica HOM05D000198 ORTHO05D005702 1.1e-20 103.2 98 56.1
Peaxi162Scf00117g00003 Petunia axillaris HOM05D000198 ORTHO05D005702 1.5e-20 102.8 98 55.1
Duzib268G0428 Durio zibethinus HOM05D000198 ORTHO05D005702 2.5e-20 102.1 98 55.1
MD05G1238300 Malus domestica HOM05D000198 ORTHO05D005702 2.5e-20 102.1 98 55.1
Manes.16G048100 Manihot esculenta HOM05D000198 ORTHO05D005702 2.5e-20 102.1 98 56.1
Peaxi162Scf00153g00189 Petunia axillaris HOM05D000198 ORTHO05D005702 2.5e-20 102.1 98 56.1
Cc05_g16560 Coffea canephora HOM05D000198 ORTHO05D005702 3.3e-20 101.7 98 57.1
Thecc.07G192200 Theobroma cacao HOM05D000198 ORTHO05D005702 3.3e-20 101.7 98 56.1
DCAR_004554 Daucus carota HOM05D000198 ORTHO05D005702 4.3e-20 101.3 98 55.1
PGR031G3164 Punica granatum HOM05D000198 ORTHO05D005702 4.3e-20 101.3 98 55.1
Hma1.2p1_0334F.1_g128390 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 5.6e-20 100.9 98 54.1
Hma1.2p1_1896F.1_g306840 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 5.6e-20 100.9 98 54.1
Nn8g40255 Nelumbo nucifera HOM05D000198 ORTHO05D005702 5.6e-20 100.9 98 54.1
THA.LOC104808138 Tarenaya hassleriana HOM05D000198 ORTHO05D005702 5.6e-20 100.9 98 54.1
GSVIVG01036719001 Vitis vinifera HOM05D000198 ORTHO05D005702 5.6e-20 100.9 98 55.1
Aa31LG4G1580 Aethionema arabicum HOM05D000198 ORTHO05D005702 7.3e-20 100.5 98 52.0
MSTRG.7092 Avicennia marina HOM05D000198 ORTHO05D005702 7.3e-20 100.5 98 54.1
ECA236G0201 Erigeron canadensis HOM05D000198 ORTHO05D005702 7.3e-20 100.5 98 54.1
Sc06g0002010 Simmondsia chinensis HOM05D000198 ORTHO05D005702 7.3e-20 100.5 98 55.1
Rhsim06G0244300 Rhododendron simsii HOM05D000198 ORTHO05D005702 9.5e-20 100.1 98 55.1
CAN.G524.27 Capsicum annuum HOM05D000198 ORTHO05D005702 1.2e-19 99.8 98 54.1
CiPaw.11G057000 Carya illinoinensis HOM05D000198 ORTHO05D005702 1.2e-19 99.8 96 56.2
DCAR_032012 Daucus carota HOM05D000198 ORTHO05D005702 1.2e-19 99.8 98 55.1
Sopen09g033640 Solanum pennellii HOM05D000198 ORTHO05D005702 1.2e-19 99.8 98 53.1
PGSC0003DMG400017144 Solanum tuberosum HOM05D000198 ORTHO05D005702 1.2e-19 99.8 98 53.1
SGA_v2.0_scaffold7G03629 Striga asiatica HOM05D000198 ORTHO05D005702 1.2e-19 99.8 98 56.1
Ah.02g111790 Amaranthus hybridus HOM05D000198 ORTHO05D005702 1.6e-19 99.4 98 55.1
Cfa019371 Carpinus fangiana HOM05D000198 ORTHO05D005702 1.6e-19 99.4 98 53.1
Prupe.4G128100 Prunus persica HOM05D000198 ORTHO05D005702 1.6e-19 99.4 98 55.1
FvH4_3g14080 Fragaria vesca HOM05D000198 ORTHO05D005702 2.1e-19 99.0 97 53.6
FAN11G1157 Fragaria x ananassa HOM05D000198 ORTHO05D005702 2.1e-19 99.0 97 53.6
FAN16G0643 Fragaria x ananassa HOM05D000198 ORTHO05D005702 2.1e-19 99.0 97 53.6
FAN21G2180 Fragaria x ananassa HOM05D000198 ORTHO05D005702 2.8e-19 98.6 97 53.6
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 2.8e-19 98.6 98 52.0
HanXRQChr11g0335861 Helianthus annuus HOM05D000198 ORTHO05D005702 2.8e-19 98.6 98 52.0
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 2.8e-19 98.6 98 52.0
AUR62039633 Chenopodium quinoa HOM05D000198 ORTHO05D005702 3.6e-19 98.2 98 54.1
Lj2A9G44 Lonicera japonica HOM05D000198 ORTHO05D005702 3.6e-19 98.2 98 53.1
unitig_26.g10057 Utricularia gibba HOM05D000198 ORTHO05D005702 4.7e-19 97.8 98 55.1
Haze_07763 Corylus avellana HOM05D000198 ORTHO05D005702 6.2e-19 97.4 98 52.0
AT1G79440 Arabidopsis thaliana HOM05D000198 ORTHO05D005702 8.1e-19 97.1 98 53.1
AUR62024987 Chenopodium quinoa HOM05D000198 ORTHO05D005702 8.1e-19 97.1 98 52.0
FAN25G1729 Fragaria x ananassa HOM05D000198 ORTHO05D005702 8.1e-19 97.1 97 52.6
Solyc09g090700.1 Solanum lycopersicum HOM05D000198 ORTHO05D005702 8.1e-19 97.1 98 52.0
Migut.M01503 Erythranthe guttata HOM05D000198 ORTHO05D005702 1.1e-18 96.7 98 54.1
Thhalv10018394m.g Eutrema salsugineum HOM05D000198 ORTHO05D005702 1.1e-18 96.7 98 52.0
PSO384G4748 Papaver somniferum HOM05D000198 ORTHO05D005702 1.1e-18 96.7 98 53.1
Carub.0002s2630 Capsella rubella HOM05D000198 ORTHO05D005702 1.4e-18 96.3 98 52.0
AL2G40050 Arabidopsis lyrata HOM05D000198 ORTHO05D005702 1.8e-18 95.9 98 52.0
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 1.8e-18 95.9 98 52.0
Actinidia12753 Actinidia chinensis HOM05D000198 ORTHO05D005702 2.3e-18 95.5 98 52.0
C06p53340 Brassica napus HOM05D000198 ORTHO05D005702 2.3e-18 95.5 98 51.0
BolC6t40351H Brassica oleracea HOM05D000198 ORTHO05D005702 2.3e-18 95.5 98 51.0
TWI38G0157 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 2.3e-18 95.5 98 51.0
A07p44510 Brassica napus HOM05D000198 ORTHO05D005702 3.1e-18 95.1 98 50.0
BraA07t31961Z Brassica rapa HOM05D000198 ORTHO05D005702 3.1e-18 95.1 98 50.0
Hund12032 Selenicereus undatus HOM05D000198 ORTHO05D005702 3.1e-18 95.1 98 52.0
TWI38G1970 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 3.1e-18 95.1 98 50.0
ClCG02G018730 Citrullus lanatus HOM05D000198 ORTHO05D005702 4.0e-18 94.7 98 50.0
Ciclev10004713m.g Citrus clementina HOM05D000198 ORTHO05D005702 4.0e-18 94.7 98 51.0
Atru.chr1.55 Acer truncatum HOM05D000198 ORTHO05D005702 5.2e-18 94.4 98 50.0
Eucgr.F04474 Eucalyptus grandis HOM05D000198 ORTHO05D005702 5.2e-18 94.4 98 50.0
Gohir.A01G100200 Gossypium hirsutum HOM05D000198 ORTHO05D005702 5.2e-18 94.4 98 51.0
Gorai.002G110500 Gossypium raimondii HOM05D000198 ORTHO05D005702 5.2e-18 94.4 98 51.0
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 5.2e-18 94.4 98 50.0
CSS0002476 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 6.8e-18 94.0 98 53.1
TAR626G1240 Trochodendron aralioides HOM05D000198 ORTHO05D005702 6.8e-18 94.0 98 52.0
CDE06G0595 Ceratophyllum demersum HOM05D000198 ORTHO05D005702 8.9e-18 93.6 98 51.0
CsaV3_6G013440 Cucumis sativus L. HOM05D000198 ORTHO05D005702 8.9e-18 93.6 98 50.0
Potri.010G174000 Populus trichocarpa HOM05D000198 ORTHO05D005702 8.9e-18 93.6 98 52.0
RcHm_v2.0_Chr5g0023391 Rosa chinensis HOM05D000198 ORTHO05D005702 8.9e-18 93.6 98 50.0
Sp5g34490 Schrenkiella parvula HOM05D000198 ORTHO05D005702 8.9e-18 93.6 98 50.0
Gohir.D01G084900 Gossypium hirsutum HOM05D000198 ORTHO05D005702 1.2e-17 93.2 98 50.0
ATR0697G108 Amborella trichopoda HOM05D000198 ORTHO05D005702 2.0e-17 92.4 98 50.0
EL10Ac2g03290 Beta vulgaris HOM05D000198 ORTHO05D005702 2.0e-17 92.4 98 49.0
SHI33378 Sapria himalayana HOM05D000198 ORTHO05D005702 2.0e-17 92.4 98 51.0
MELO3C019622.2 Cucumis melo HOM05D000198 ORTHO05D005702 2.6e-17 92.0 98 49.0
Aqoxy1G01365 Aquilegia oxysepala HOM05D000198 ORTHO05D005702 5.8e-17 90.9 98 51.0
HanXRQChr11g0335841 Helianthus annuus HOM05D000198 ORTHO05D005702 7.6e-17 90.5 98 48.0
Sed0009726 Sechium edule HOM05D000198 ORTHO05D005702 7.6e-17 90.5 98 49.0
Zm00001eb207050 Zea mays HOM05D000198 ORTHO05D005702 9.9e-17 90.1 98 49.0
Zm00001eb233300 Zea mays HOM05D000198 ORTHO05D005702 9.9e-17 90.1 98 49.0
SalBow8G1239 Salvia bowleyana HOM05D000198 ORTHO05D005702 2.9e-16 88.6 99 51.5
SalBow8G3664 Salvia bowleyana HOM05D000198 ORTHO05D005702 2.9e-16 88.6 99 51.5
HanXRQChr11g0335851 Helianthus annuus HOM05D000198 ORTHO05D005702 3.7e-16 88.2 97 47.4
QL04p094021 Quercus lobata HOM05D000198 ORTHO05D005702 4.9e-16 87.8 114 46.5
SMO364G0446 Selaginella moellendorffii HOM05D000198 ORTHO05D005702 4.9e-16 87.8 98 49.0
AagrBONN_evm.TU.Sc2ySwM_228.3765 Anthoceros agrestis HOM05D000198 ORTHO05D005702 1.6e-14 82.8 98 46.9
Pp3c6_27580 Physcomitrium patens HOM05D000198 ORTHO05D005702 1.6e-14 82.8 98 43.9
Lj4g0028073 Lotus japonicus HOM05D000198 ORTHO05D023800 2.1e-14 82.4 42 97.6
GSVIVG01036720001 Vitis vinifera HOM05D000198 ORTHO05D005702 3.5e-14 81.6 98 45.9
GSVIVG01036721001 Vitis vinifera HOM05D000198 ORTHO05D005702 6.0e-14 80.9 98 42.9
SGA_v2.0_scaffold7G03666 Striga asiatica HOM05D000198 ORTHO05D005702 1.3e-13 79.7 126 41.3
Mapoly0091s0004 Marchantia polymorpha HOM05D000198 ORTHO05D005702 1.5e-12 76.3 98 41.8
Sabra10G0133900 Salix brachista HOM05D000198 ORTHO05D005702 1.9e-12 75.9 145 35.2
Pp3c26_10950 Physcomitrium patens HOM05D000198 ORTHO05D005702 3.3e-12 75.1 98 38.8
Pp3c26_10958 Physcomitrium patens HOM05D000198 ORTHO05D005702 3.3e-12 75.1 98 38.8
HanXRQChr12g0382611 Helianthus annuus HOM05D000198 ORTHO05D035988 2.0e-09 65.9 87 42.5
Cpa.g.sc32.93 Carica papaya HOM05D000198 ORTHO05D005702 4.4e-09 64.7 97 41.2
unitig_749.g13692 Utricularia gibba HOM05D000198 ORTHO05D005702 1.1e-07 60.1 42 69.0
MCO16G663 Micromonas commoda HOM05D000198 ORTHO05D005702 4.2e-07 58.2 100 37.0
Cfa027216 Carpinus fangiana HOM05D000198 ORTHO05D005702 5.4e-07 57.8 98 34.7
BolC2t09659H Brassica oleracea HOM05D000924 ORTHO05D001209 1.2e-06 56.6 92 38.0
BcaC08g47505 Brassica carinata HOM05D000198 ORTHO05D005702 2.1e-06 55.8 94 41.5
Cre08.g381702 Chlamydomonas reinhardtii HOM05D000198 ORTHO05D005702 2.1e-06 55.8 116 29.3
CBR_g12684 Chara braunii HOM05D000198 ORTHO05D005702 2.7e-06 55.5 78 39.7
vmacro11675 Vaccinium macrocarpon HOM05D000198 ORTHO05D023800 2.7e-06 55.5 41 68.3
vmacro22501 Vaccinium macrocarpon HOM05D000198 ORTHO05D023800 2.7e-06 55.5 41 68.3
PRCOL_00006022 Prasinoderma coloniale HOM05D000198 ORTHO05D005702 3.5e-06 55.1 100 33.0


User provided reference genes

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