Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 4.0e-162 574.7 289 100.0
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 4.1e-159 564.7 289 98.6
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 4.3e-156 554.7 285 98.2
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.9e-127 459.5 287 80.5
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 2.4e-122 442.6 287 77.4
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 7.6e-121 437.6 288 78.1
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 1.2e-118 430.3 283 77.4
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 2.1e-118 429.5 290 74.5
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 2.2e-112 409.5 296 72.6
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 2.4e-111 406.0 304 70.7
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 1.1e-92 344.0 243 72.0
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.1e-90 337.4 280 59.3
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 9.0e-90 334.3 260 65.0
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.3e-88 330.5 290 58.6
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 5.0e-88 328.6 267 61.0
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 9.4e-87 324.3 274 59.1
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 8.8e-85 317.8 290 57.9
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 2.5e-84 316.2 225 67.1
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.7e-84 315.1 248 61.7
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 7.4e-84 314.7 241 64.7
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 7.4e-84 314.7 282 55.7
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 9.7e-84 314.3 289 55.7
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 9.7e-84 314.3 283 55.5
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.3e-83 313.9 265 59.6
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 1.7e-83 313.5 262 58.4
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 3.7e-83 312.4 283 56.5
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 4.8e-83 312.0 280 55.7
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 2.4e-82 309.7 284 56.7
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 3.1e-82 309.3 282 55.3
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 5.3e-82 308.5 241 61.8
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 5.3e-82 308.5 243 61.7
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 6.9e-82 308.1 242 62.0
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 1.5e-81 307.0 284 56.3
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.3e-80 303.9 241 61.4
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 1.3e-80 303.9 238 60.9
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.9e-80 302.8 254 61.0
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 2.9e-80 302.8 257 59.9
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 5.0e-80 302.0 241 62.7
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 8.5e-80 301.2 241 61.0
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 1.9e-79 300.1 255 58.8
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 5.5e-79 298.5 267 56.6
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 9.4e-79 297.7 297 51.5
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 1.2e-78 297.4 263 56.7
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.7e-78 295.4 266 56.8
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.4e-77 293.9 279 53.0
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 3.0e-77 292.7 243 58.8
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.1e-76 290.8 242 59.1
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.5e-76 290.4 285 54.0
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 2.0e-76 290.0 266 55.3
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.0e-76 290.0 266 55.3
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.6e-76 289.7 266 55.3
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 3.3e-76 289.3 280 56.4
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 4.4e-76 288.9 241 56.8
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.4e-76 288.9 266 54.9
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 5.7e-76 288.5 280 55.0
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 9.7e-76 287.7 281 56.9
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 9.7e-76 287.7 316 49.4
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 2.2e-75 286.6 263 53.6
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-75 286.6 266 54.9
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 4.8e-75 285.4 245 57.1
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 8.2e-75 284.6 280 55.4
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 1.1e-74 284.3 255 57.6
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 1.1e-74 284.3 288 47.6
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.1e-74 284.3 265 54.7
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 1.1e-74 284.3 258 53.1
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-74 283.5 266 54.5
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.8e-74 283.5 274 51.5
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 2.4e-74 283.1 263 52.5
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 9.1e-74 281.2 281 52.7
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.2e-73 280.8 263 53.6
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 2.0e-73 280.0 275 52.7
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 2.0e-73 280.0 264 55.3
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 4.5e-73 278.9 281 53.7
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.3e-72 277.3 281 53.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 1.3e-72 277.3 281 53.0
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 1.7e-72 276.9 289 49.5
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 2.9e-72 276.2 221 62.9
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 5.0e-72 275.4 280 51.8
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 5.0e-72 275.4 271 51.7
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 6.5e-72 275.0 280 51.8
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.4e-71 273.9 249 54.2
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 4.2e-71 272.3 238 55.5
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 5.5e-71 271.9 280 51.8
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 5.5e-71 271.9 280 51.8
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 5.5e-71 271.9 280 51.8
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 7.2e-71 271.6 273 49.8
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 9.4e-71 271.2 289 48.8
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 1.6e-70 270.4 269 53.2
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 8.0e-70 268.1 253 53.8
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.8e-67 259.6 249 50.6
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 2.4e-66 256.5 266 50.4
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 2.4e-66 256.5 239 51.9
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 9.1e-66 254.6 236 52.1
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 3.8e-64 249.2 232 53.9
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 3.8e-64 249.2 276 49.3
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 2.1e-62 243.4 189 64.0
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 3.6e-62 242.7 240 51.7
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.2e-60 237.7 263 48.3
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.6e-60 236.5 212 55.2
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 1.7e-56 223.8 192 57.8
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.6e-54 217.2 264 45.1
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 2.2e-51 206.8 270 45.2
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 2.4e-50 203.4 295 42.4
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 3.6e-46 189.5 239 43.1
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 2.6e-44 183.3 189 49.2
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 5.0e-40 169.1 262 38.9
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 3.1e-37 159.8 237 38.8
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 4.0e-37 159.5 110 68.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 2.0e-33 147.1 238 36.1
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 3.0e-32 143.3 264 33.7
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.0e-32 142.5 140 57.1
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.1e-29 133.3 252 34.1
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.7e-27 127.5 110 62.7
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.2e-26 123.2 101 53.5
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 3.2e-26 123.2 101 53.5
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.8e-25 118.6 167 39.5
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.3e-24 117.1 167 39.5
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 4.3e-23 112.8 144 43.1
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 9.5e-23 111.7 232 33.6
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 1.8e-21 107.5 303 31.4
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 3.7e-19 99.8 142 43.7
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 1.1e-18 98.2 248 30.6
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.2e-17 94.7 276 28.3
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 1.6e-14 84.3 74 55.4
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 5.2e-13 79.3 51 76.5
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.2e-12 78.2 119 38.7
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 9.3e-10 68.6 64 53.1
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 9.3e-10 68.6 43 72.1
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 1.7e-08 64.3 64 48.4
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 3.9e-08 63.2 59 47.5


User provided reference genes

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