Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 1.2e-194 682.9 328 100.0
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 3.0e-150 535.4 372 73.4
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 5.2e-150 534.6 355 74.4
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.6e-149 532.3 357 73.4
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 5.7e-149 531.2 355 73.2
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 5.7e-149 531.2 372 71.2
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 1.7e-148 529.6 355 74.1
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 3.7e-148 528.5 355 73.2
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 6.3e-148 527.7 377 70.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.1e-147 526.9 372 71.2
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.4e-147 526.6 355 74.1
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 1.8e-147 526.2 372 72.0
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.1e-147 525.0 372 71.5
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 3.5e-146 521.9 372 71.5
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 7.7e-146 520.8 372 70.7
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 5.0e-145 518.1 373 71.8
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 5.0e-145 518.1 365 70.7
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 5.0e-145 518.1 372 70.7
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 8.5e-145 517.3 373 70.5
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.1e-144 516.9 355 72.1
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 1.5e-144 516.5 371 69.8
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.9e-144 516.2 373 70.5
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 1.9e-144 516.2 373 71.3
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.5e-144 515.8 287 85.0
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 3.2e-144 515.4 373 69.4
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 7.2e-144 514.2 356 71.6
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 9.4e-144 513.8 372 70.2
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 1.6e-143 513.1 372 69.9
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 2.1e-143 512.7 355 71.3
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 2.7e-143 512.3 392 67.1
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 2.7e-143 512.3 373 70.0
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 3.6e-143 511.9 372 69.9
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 3.6e-143 511.9 373 69.7
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.0e-142 510.4 373 68.9
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.0e-142 510.4 373 68.9
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.4e-142 510.0 373 69.4
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 4.0e-142 508.4 372 69.4
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 4.0e-142 508.4 366 70.8
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 5.2e-142 508.1 372 69.4
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 5.2e-142 508.1 354 70.9
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 6.8e-142 507.7 356 70.2
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 8.8e-142 507.3 368 69.6
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.5e-141 506.5 373 68.6
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 2.6e-141 505.8 379 69.1
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 2.6e-141 505.8 357 70.9
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 3.4e-141 505.4 356 69.9
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 3.4e-141 505.4 354 71.2
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 5.7e-141 504.6 373 69.4
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.2e-140 502.7 372 69.4
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 2.2e-140 502.7 370 69.5
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 8.3e-140 500.7 372 67.5
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.1e-139 500.4 377 68.4
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.4e-139 500.0 373 68.4
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 1.4e-139 500.0 371 67.4
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.4e-139 500.0 363 69.1
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 3.1e-139 498.8 355 69.9
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 4.1e-139 498.4 374 68.7
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.2e-138 496.9 372 68.0
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 1.2e-138 496.9 372 68.0
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 1.6e-138 496.5 372 68.0
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.6e-138 496.5 356 69.1
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 1.6e-138 496.5 356 69.1
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 3.5e-138 495.4 356 68.5
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 7.7e-138 494.2 355 69.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 7.7e-138 494.2 375 67.2
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 7.7e-138 494.2 375 67.2
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 1.0e-137 493.8 353 68.6
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 1.0e-137 493.8 371 66.8
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 2.9e-137 492.3 356 68.0
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 3.8e-137 491.9 355 68.5
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 5.0e-137 491.5 373 66.5
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 5.0e-137 491.5 375 66.9
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 6.6e-137 491.1 355 69.0
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 6.6e-137 491.1 355 70.4
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 1.1e-136 490.3 353 68.0
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-136 490.3 353 68.0
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 1.1e-136 490.3 353 68.0
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 1.1e-136 490.3 353 68.0
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 1.1e-136 490.3 353 68.0
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.9e-136 489.6 353 68.3
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 2.5e-136 489.2 351 69.5
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 4.3e-136 488.4 353 68.0
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.3e-136 488.4 386 66.1
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 5.6e-136 488.0 363 66.7
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 5.6e-136 488.0 354 67.8
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 7.3e-136 487.6 377 66.6
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 7.3e-136 487.6 353 68.0
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 7.3e-136 487.6 336 71.7
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 9.5e-136 487.3 355 68.7
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 1.2e-135 486.9 372 66.4
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 2.8e-135 485.7 373 66.0
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 3.6e-135 485.3 375 66.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 4.7e-135 485.0 352 67.9
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.0e-135 484.2 354 68.4
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.3e-134 482.6 375 66.9
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 3.0e-134 482.3 372 65.6
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 8.9e-134 480.7 370 66.2
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 3.4e-133 478.8 352 67.0
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 5.7e-133 478.0 375 65.6
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 9.8e-133 477.2 353 68.8
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.3e-132 476.9 370 64.9
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 1.3e-132 476.9 399 62.2
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 2.9e-132 475.7 372 65.9
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 6.4e-132 474.6 290 79.3
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 1.1e-131 473.8 366 67.8
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 2.4e-131 472.6 358 66.5
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 2.4e-131 472.6 373 65.7
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 3.2e-131 472.2 384 62.5
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.2e-130 470.3 353 67.7
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 1.6e-130 469.9 362 64.9
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 2.0e-130 469.5 373 64.6
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 3.5e-130 468.8 372 66.1
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 7.8e-130 467.6 353 67.4
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 1.3e-129 466.8 370 63.8
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.7e-129 466.5 355 65.4
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.3e-129 466.1 353 66.0
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 3.0e-129 465.7 370 63.8
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 3.9e-129 465.3 353 67.4
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 2.5e-128 462.6 374 65.5
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 9.5e-128 460.7 269 82.5
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.7e-127 458.4 283 77.0
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 8.9e-126 454.1 285 77.2
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 9.8e-125 450.7 371 63.3
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 1.7e-124 449.9 365 62.5
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 3.7e-124 448.7 377 63.4
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 8.3e-124 447.6 374 62.3
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 1.4e-123 446.8 273 78.4
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 2.4e-123 446.0 350 64.3
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 2.4e-123 446.0 356 64.0
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 4.1e-123 445.3 372 64.5
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 5.4e-123 444.9 441 56.7
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 1.2e-122 443.7 354 64.4
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.6e-122 443.4 370 60.5
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 2.7e-122 442.6 355 62.8
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 4.6e-122 441.8 352 61.4
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.0e-121 440.7 345 64.6
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.0e-121 440.7 356 62.9
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 5.0e-121 438.3 358 62.6
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 4.3e-120 435.3 354 63.6
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.8e-118 429.9 354 63.3
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 8.3e-116 421.0 356 60.4
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 4.6e-114 415.2 381 59.8
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 6.0e-114 414.8 288 69.1
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 7.8e-114 414.5 287 70.0
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.0e-113 414.1 287 69.7
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 3.0e-113 412.5 287 68.6
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 5.1e-113 411.8 392 58.2
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 2.5e-112 409.5 357 58.5
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 9.5e-112 407.5 288 68.8
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 1.2e-109 400.6 287 69.0
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.7e-108 396.7 239 79.1
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 7.1e-107 391.3 312 64.4
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 2.3e-105 386.3 289 65.4
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 5.6e-104 381.7 299 63.9
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 5.6e-104 381.7 353 56.1
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-102 377.5 287 65.5
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 3.6e-95 352.4 307 56.7
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 9.9e-93 344.4 281 58.7
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 9.3e-91 337.8 283 63.3
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 3.0e-89 332.8 200 78.5
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 6.6e-89 331.6 282 62.1
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 3.3e-88 329.3 281 61.2
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.8e-87 326.2 267 62.9
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 3.6e-87 325.9 290 55.5
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 5.3e-86 322.0 320 53.4
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 2.0e-85 320.1 263 63.5
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 3.4e-85 319.3 177 84.7
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 4.2e-83 312.4 292 55.8
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 6.0e-82 308.5 196 75.0
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 4.9e-76 288.9 265 57.4
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 9.1e-54 214.9 268 48.9
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.6e-48 196.8 201 54.2
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 1.2e-45 188.0 113 82.3
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 8.8e-41 171.8 297 34.3
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 5.0e-36 156.0 119 64.7
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 2.5e-35 153.7 291 32.0
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 2.5e-35 153.7 369 27.9
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 3.2e-35 153.3 147 57.8
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.2e-34 151.4 119 63.0
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 1.6e-34 151.0 328 26.8
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.5e-32 144.4 115 60.0
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 2.8e-31 140.2 153 49.0
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 9.5e-11 72.0 49 75.5


User provided reference genes

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