Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 2.4e-47 191.8 94 100.0
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 6.9e-47 190.3 94 98.9
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 6.9e-47 190.3 94 98.9
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 6.9e-47 190.3 94 98.9
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 6.9e-47 190.3 94 98.9
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 93.6
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 91.5
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 91.5
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 91.5
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 90.4
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 90.4
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 3.9e-42 174.5 94 90.4
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.1e-42 174.1 94 90.4
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.1e-42 174.1 94 90.4
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 5.1e-42 174.1 94 90.4
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 1.1e-41 172.9 94 90.4
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 1.1e-41 172.9 94 90.4
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.5e-41 172.6 94 89.4
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.5e-41 172.6 94 89.4
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.5e-41 172.6 94 89.4
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.5e-41 172.6 93 90.3
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.3e-41 171.4 94 89.4
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.3e-41 171.0 94 88.3
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-40 169.5 94 88.3
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 87.2
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 88.3
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 88.3
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 8.1e-40 166.8 94 88.3
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 8.1e-40 166.8 94 88.3
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-39 166.4 94 86.2
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 86.2
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 6.9e-39 163.7 94 86.2
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.0e-39 163.3 94 86.2
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.0e-38 162.2 94 84.0
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.4e-38 161.4 94 83.0
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 7.6e-38 160.2 94 84.0
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.6e-38 160.2 94 84.0
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.9e-37 158.3 92 82.6
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.8e-37 157.9 94 83.0
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-36 156.4 94 80.9
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.4e-36 156.0 94 84.0
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 1.9e-36 155.6 94 79.8
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.2e-36 154.5 94 81.9
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.7e-35 151.8 94 81.9
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 3.5e-35 151.4 94 79.8
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 7.9e-35 150.2 82 87.8
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 3.0e-34 148.3 94 81.9
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 3.0e-34 148.3 81 88.9
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 3.0e-34 148.3 94 80.9
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-33 146.4 81 87.7
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.5e-33 146.0 83 85.5
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 4.3e-33 144.4 84 82.1
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 7.4e-33 143.7 82 81.7
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 9.6e-33 143.3 82 85.4
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 1.6e-32 142.5 94 77.7
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.8e-32 141.7 83 83.1
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.2e-32 140.6 81 85.2
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 1.1e-31 139.8 84 79.8
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 3.1e-31 138.3 79 83.5
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 6.9e-31 137.1 76 86.8
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 6.9e-31 137.1 79 82.3
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 9.0e-31 136.7 79 83.5
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.4e-29 130.2 88 76.1
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-28 127.1 74 83.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.2e-27 126.3 82 76.8
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.7e-27 125.2 72 83.3
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.7e-27 125.2 86 69.8
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.6e-27 124.4 74 79.7
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 6.0e-27 124.0 94 71.3
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 7.9e-27 123.6 72 83.3
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 6.7e-26 120.6 69 85.5
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 6.7e-26 120.6 69 85.5
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 8.7e-26 120.2 94 67.0
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 9.6e-25 116.7 66 86.4
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.8e-24 115.2 62 88.7
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.3e-23 110.9 75 74.7
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.3e-23 110.9 75 74.7
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.3e-23 110.9 75 74.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 2.0e-22 109.0 67 82.1
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.0e-21 106.7 73 74.0
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.7e-21 105.9 55 92.7
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.8e-21 104.8 62 80.6
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-20 103.2 61 82.0
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.2e-20 101.7 59 84.7
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 4.6e-19 97.8 53 86.8
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.0e-18 96.7 73 64.4
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 1.0e-18 96.7 56 83.9
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.8e-18 95.9 62 77.4
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 5.1e-18 94.4 82 64.6
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.9e-17 92.4 59 76.3
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 3.3e-17 91.7 77 64.9
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 4.3e-17 91.3 46 95.7
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 5.7e-17 90.9 62 75.8
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.7e-17 90.9 47 91.5
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 4.8e-16 87.8 50 82.0
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.4e-15 86.3 61 72.1
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 3.1e-15 85.1 44 88.6
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 1.5e-14 82.8 44 86.4
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.0e-14 82.4 46 82.6
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 7.7e-14 80.5 70 61.4
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 1.0e-13 80.1 41 92.7
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 1.0e-13 80.1 52 73.1
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 2.9e-13 78.6 43 83.7
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 7.2e-12 73.9 47 72.3
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 7.9e-11 70.5 41 82.9
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 8.8e-10 67.0 35 91.4
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-09 66.6 37 81.1
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 5.7e-09 64.3 84 45.2
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 1.7e-08 62.8 89 41.6
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 2.2e-08 62.4 29 96.6
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.4e-07 59.7 37 78.4
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.1e-07 58.5 27 96.3


User provided reference genes

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