Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0014642 Lotus japonicus HOM05D005966 ORTHO05D007584 0.0e+00 1301.2 659 100.0
Glyma.05G009700 Glycine max HOM05D005966 ORTHO05D007584 0.0e+00 1087.4 661 84.3
Glyma.17G117600 Glycine max HOM05D005966 ORTHO05D007584 0.0e+00 1076.6 662 84.3
VMungo1215G0752 Vigna mungo HOM05D005966 ORTHO05D007584 2.2e-309 1065.1 665 82.3
Lalb_Chr07g0178861 Lupinus albus HOM05D005966 ORTHO05D007584 5.4e-308 1060.4 660 82.3
Phvul.003G161800 Phaseolus vulgaris HOM05D005966 ORTHO05D007584 3.9e-306 1054.3 665 82.1
Medtr4g114100 Medicago truncatula HOM05D005966 ORTHO05D007584 4.5e-302 1040.8 660 81.8
TPR.G10691 Trifolium pratense HOM05D005966 ORTHO05D007584 4.5e-302 1040.8 659 81.9
Ca_21691_v3 Cicer arietinum L. HOM05D005966 ORTHO05D007584 5.8e-302 1040.4 656 82.3
arahy.Tifrunner.gnm1.ann1.QB31BF Arachis hypogaea HOM05D005966 ORTHO05D007584 1.8e-298 1028.9 663 80.5
arahy.Tifrunner.gnm1.ann1.Z0FLIL Arachis hypogaea HOM05D005966 ORTHO05D007584 2.4e-295 1018.5 675 79.0
Psat4g039400 Pisum sativum HOM05D005966 ORTHO05D007584 2.5e-292 1008.4 657 79.3
CiPaw.04G170200 Carya illinoinensis HOM05D005966 ORTHO05D007584 1.4e-247 859.8 663 68.2
Haze_25609 Corylus avellana HOM05D005966 ORTHO05D007584 2.7e-246 855.5 670 66.9
Cfa003353 Carpinus fangiana HOM05D005966 ORTHO05D007584 3.5e-246 855.1 661 67.8
CANSAT11G2564 Cannabis sativa HOM05D005966 ORTHO05D007584 8.0e-243 844.0 660 67.3
Dinv36541 Davidia involucrata HOM05D005966 ORTHO05D007584 5.4e-239 831.2 662 65.7
Ciclev10007689m.g Citrus clementina HOM05D005966 ORTHO05D007584 3.8e-237 825.1 659 64.0
Atru.chr7.1212 Acer truncatum HOM05D005966 ORTHO05D007584 3.0e-234 815.5 657 64.7
RcHm_v2.0_Chr7g0212931 Rosa chinensis HOM05D005966 ORTHO05D007584 1.5e-233 813.1 653 65.4
MD15G1175600 Malus domestica HOM05D005966 ORTHO05D007584 3.4e-233 812.0 653 64.8
Prupe.7G240500 Prunus persica HOM05D005966 ORTHO05D007584 4.4e-233 811.6 651 65.4
FvH4_5g23630 Fragaria vesca HOM05D005966 ORTHO05D007584 2.9e-232 808.9 654 65.0
FAN13G2896 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.4e-231 806.6 654 65.0
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.4e-231 806.6 653 65.1
Potri.015G057100 Populus trichocarpa HOM05D005966 ORTHO05D007584 7.0e-231 804.3 663 62.4
Duzib187G1826 Durio zibethinus HOM05D005966 ORTHO05D007584 1.6e-230 803.1 663 63.5
GSVIVG01015509001 Vitis vinifera HOM05D005966 ORTHO05D007584 2.0e-230 802.7 655 63.4
CsaV3_5G040100 Cucumis sativus L. HOM05D005966 ORTHO05D007584 5.0e-229 798.1 663 63.3
MELO3C022187.2 Cucumis melo HOM05D005966 ORTHO05D007584 6.2e-227 791.2 659 63.1
ClCG08G000940 Citrullus lanatus HOM05D005966 ORTHO05D007584 1.8e-226 789.6 661 63.4
Eucgr.C04186 Eucalyptus grandis HOM05D005966 ORTHO05D007584 1.8e-226 789.6 655 64.0
Hma1.2p1_0018F.1_g012590 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 4.0e-226 788.5 660 63.2
Sed0002176 Sechium edule HOM05D005966 ORTHO05D007584 8.9e-226 787.3 656 63.6
Gorai.001G041100 Gossypium raimondii HOM05D005966 ORTHO05D007584 1.2e-225 786.9 658 62.0
Gohir.A07G035000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 2.6e-225 785.8 659 62.1
Thecc.09G123800 Theobroma cacao HOM05D005966 ORTHO05D007584 6.4e-224 781.2 665 62.6
Sabra15G0082400 Salix brachista HOM05D005966 ORTHO05D007584 3.5e-222 775.4 662 61.0
Actinidia07431 Actinidia chinensis HOM05D005966 ORTHO05D007584 3.0e-221 772.3 661 63.1
FAN18G2691 Fragaria x ananassa HOM05D005966 ORTHO05D007584 2.5e-220 769.2 630 64.6
PGR102G3358 Punica granatum HOM05D005966 ORTHO05D007584 7.3e-220 767.7 656 63.4
Gorai.009G019100 Gossypium raimondii HOM05D005966 ORTHO05D007584 2.8e-219 765.8 671 60.5
Nn2g12002 Nelumbo nucifera HOM05D005966 ORTHO05D007584 1.4e-218 763.5 663 61.1
Cc06_g08730 Coffea canephora HOM05D005966 ORTHO05D007584 1.8e-218 763.1 665 60.5
Gohir.A05G017800 Gossypium hirsutum HOM05D005966 ORTHO05D007584 5.2e-218 761.5 671 60.2
QL02p087915 Quercus lobata HOM05D005966 ORTHO05D007584 1.2e-217 760.4 910 49.0
vmacro06121 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.3e-216 756.9 675 60.6
vmacro06181 Vaccinium macrocarpon HOM05D005966 ORTHO05D007584 1.3e-216 756.9 675 60.6
TAR636G0633 Trochodendron aralioides HOM05D005966 ORTHO05D007584 6.2e-211 738.0 632 62.2
Actinidia26399 Actinidia chinensis HOM05D005966 ORTHO05D007584 5.2e-210 734.9 682 60.1
Lj7C631G5 Lonicera japonica HOM05D005966 ORTHO05D007584 1.2e-209 733.8 756 55.6
PGSC0003DMG400020667 Solanum tuberosum HOM05D005966 ORTHO05D007584 9.9e-209 730.7 660 60.0
Sopen12g002600 Solanum pennellii HOM05D005966 ORTHO05D007584 8.4e-208 727.6 658 59.7
Solyc12g006650.2 Solanum lycopersicum HOM05D005966 ORTHO05D007584 1.4e-207 726.9 659 59.5
SGA_v2.0_scaffold163G38051 Striga asiatica HOM05D005966 ORTHO05D007584 1.9e-207 726.5 661 59.3
CSS0033485 Camellia sinensis var. sinensis HOM05D005966 ORTHO05D007584 9.2e-207 724.2 665 59.8
DCAR_014873 Daucus carota HOM05D005966 ORTHO05D007584 1.6e-206 723.4 663 59.3
CAN.G377.10 Capsicum annuum HOM05D005966 ORTHO05D007584 7.8e-206 721.1 658 59.3
Nitab4.5_0007523g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 1.0e-205 720.7 663 59.0
Nitab4.5_0010819g0010 Nicotiana tabacum HOM05D005966 ORTHO05D007584 3.9e-205 718.8 666 58.6
Manes.06G049700 Manihot esculenta HOM05D005966 ORTHO05D007584 7.3e-204 714.5 662 58.3
PSO455G0207 Papaver somniferum HOM05D005966 ORTHO05D007584 1.2e-203 713.8 659 57.2
PSO170G3915 Papaver somniferum HOM05D005966 ORTHO05D007584 1.6e-203 713.4 659 57.2
Aqoxy5G00491 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 2.4e-202 709.5 658 58.4
Gohir.D07G039000 Gossypium hirsutum HOM05D005966 ORTHO05D007584 5.3e-202 708.4 659 57.7
Oeu018459.1 Olea europaea HOM05D005966 ORTHO05D007584 6.9e-202 708.0 642 59.3
MSTRG.14036 Avicennia marina HOM05D005966 ORTHO05D007584 2.0e-201 706.4 663 57.9
ECA236G0249 Erigeron canadensis HOM05D005966 ORTHO05D007584 1.4e-199 700.3 659 58.0
Lsat_1_v5_gn_8_59020 Lactuca sativa HOM05D005966 ORTHO05D007584 6.0e-198 694.9 669 58.3
Oeu021589.1 Olea europaea HOM05D005966 ORTHO05D007584 1.7e-197 693.3 626 59.3
HanXRQChr04g0104201 Helianthus annuus HOM05D005966 ORTHO05D007584 2.3e-197 693.0 660 57.1
Sp6g24230 Schrenkiella parvula HOM05D005966 ORTHO05D007584 3.9e-197 692.2 653 57.6
Aa31LG1G14440 Aethionema arabicum HOM05D005966 ORTHO05D007584 5.1e-197 691.8 650 57.4
Thhalv10012923m.g Eutrema salsugineum HOM05D005966 ORTHO05D007584 5.1e-197 691.8 653 57.6
Gohir.D05G018700 Gossypium hirsutum HOM05D005966 ORTHO05D007584 4.3e-196 688.7 671 55.6
Peaxi162Scf00984g00027 Petunia axillaris HOM05D005966 ORTHO05D007584 2.1e-195 686.4 631 58.3
SalBow1G1471 Salvia bowleyana HOM05D005966 ORTHO05D007584 2.1e-195 686.4 738 52.4
C03p11480 Brassica napus HOM05D005966 ORTHO05D007584 8.1e-195 684.5 654 57.0
A03p09900 Brassica napus HOM05D005966 ORTHO05D007584 4.0e-194 682.2 654 56.9
Rhsim03G0247300 Rhododendron simsii HOM05D005966 ORTHO05D007584 5.3e-194 681.8 584 62.5
Carub.0006s1857 Capsella rubella HOM05D005966 ORTHO05D007584 9.0e-194 681.0 655 56.6
BolC3t13620H Brassica oleracea HOM05D005966 ORTHO05D007584 1.5e-193 680.2 655 56.9
CARHR192650 Cardamine hirsuta HOM05D005966 ORTHO05D007584 1.5e-193 680.2 656 56.9
Migut.E01544 Erythranthe guttata HOM05D005966 ORTHO05D007584 1.5e-193 680.2 662 56.9
AL6G31730 Arabidopsis lyrata HOM05D005966 ORTHO05D007584 3.4e-193 679.1 655 56.8
AT5G20170 Arabidopsis thaliana HOM05D005966 ORTHO05D007584 1.7e-192 676.8 655 56.5
THA.LOC104799647 Tarenaya hassleriana HOM05D005966 ORTHO05D007584 2.7e-190 669.5 661 55.5
BraA03t10303Z Brassica rapa HOM05D005966 ORTHO05D007584 4.6e-190 668.7 654 56.0
Hund26492 Selenicereus undatus HOM05D005966 ORTHO05D007584 2.0e-185 653.3 654 54.3
AUR62033484 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.2e-183 646.0 658 54.3
Sabra15G0082900 Salix brachista HOM05D005966 ORTHO05D007584 1.8e-181 640.2 673 53.9
AUR62011094 Chenopodium quinoa HOM05D005966 ORTHO05D007584 3.9e-181 639.0 658 53.6
ATR1156G034 Amborella trichopoda HOM05D005966 ORTHO05D007584 9.3e-175 617.8 666 51.4
EL10Ac8g18623 Beta vulgaris HOM05D005966 ORTHO05D007584 4.6e-174 615.5 657 51.8
HPP92_009844 Vanilla planifolia HOM05D005966 ORTHO05D007584 7.7e-169 598.2 663 50.5
Ah.14g080180 Amaranthus hybridus HOM05D005966 ORTHO05D007584 3.6e-166 589.3 626 52.2
MD02G1034800 Malus domestica HOM05D005966 ORTHO05D007584 3.3e-164 582.8 673 52.3
Os12g0638600 Oryza sativa ssp. japonica HOM05D005966 ORTHO05D007584 1.0e-157 561.2 660 48.8
Cpa.g.sc75.51 Carica papaya HOM05D005966 ORTHO05D007584 7.2e-151 538.5 494 58.5
SEGI_37567 Sequoiadendron giganteum HOM05D005966 ORTHO05D007584 8.8e-149 531.6 704 44.2
Zm00001eb207940 Zea mays HOM05D005966 ORTHO05D007584 1.3e-147 527.7 664 45.6
CDE01G0041 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 9.4e-143 511.5 557 51.7
unitig_578.g16582 Utricularia gibba HOM05D005966 ORTHO05D007584 6.1e-134 482.3 655 44.0
Glyma.14G007400 Glycine max HOM05D005966 ORTHO05D007584 7.5e-132 475.3 296 84.8
Sc08g0006730 Simmondsia chinensis HOM05D005966 ORTHO05D007584 5.9e-129 465.7 524 49.4
Zm00001eb334260 Zea mays HOM05D005966 ORTHO05D007584 3.0e-112 410.2 544 44.3
Mapoly0010s0026 Marchantia polymorpha HOM05D005966 ORTHO05D007584 2.1e-94 350.9 714 34.0
SHI18656 Sapria himalayana HOM05D005966 ORTHO05D007584 4.4e-84 316.6 533 39.0
Pp3c3_25450 Physcomitrium patens HOM05D005966 ORTHO05D007584 1.6e-81 308.1 669 33.0
COL.COLO4_05778 Corchorus olitorius HOM05D005966 ORTHO05D007584 3.6e-78 297.0 374 47.9
SMO200G0046 Selaginella moellendorffii HOM05D005966 ORTHO05D007584 3.8e-75 287.0 649 29.7
FAN08G0676 Fragaria x ananassa HOM05D005966 ORTHO05D007584 1.7e-59 235.0 161 77.6
AagrBONN_evm.TU.Sc2ySwM_117.630 Anthoceros agrestis HOM05D005966 ORTHO05D007584 1.0e-51 209.1 477 32.7
Sc08g0006740 Simmondsia chinensis HOM05D005966 ORTHO05D007584 2.5e-42 177.9 143 65.0
Dinv41526 Davidia involucrata HOM05D006513 ORTHO05D008150 9.7e-39 166.0 165 52.1
TAR625G1387 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.4e-37 161.4 398 32.4
SHI18657 Sapria himalayana HOM05D005966 ORTHO05D007584 2.6e-36 157.9 136 63.2
Aqoxy7G02129 Aquilegia oxysepala HOM05D005966 ORTHO05D007584 1.6e-28 132.1 163 52.8
Cpa.g.sc75.52 Carica papaya HOM05D005966 ORTHO05D007584 2.2e-27 128.3 97 67.0
CBR_g48370 Chara braunii HOM05D005966 ORTHO05D000048 4.0e-24 117.5 300 31.7
Hma1.2p1_0090F.1_g045710 Hydrangea macrophylla HOM05D005966 ORTHO05D007584 1.1e-18 99.4 127 42.5
COL.COLO4_05779 Corchorus olitorius HOM05D005966 ORTHO05D007584 6.8e-16 90.1 58 67.2
GSVIVG01027692001 Vitis vinifera HOM05D005966 ORTHO05D007584 8.3e-14 83.2 125 44.0
CAN.G925.3 Capsicum annuum HOM05D005966 ORTHO05D007584 1.1e-13 82.8 86 47.7
Lsat_1_v5_gn_8_82580 Lactuca sativa HOM05D005966 ORTHO05D007584 1.0e-11 76.3 50 74.0
CDE11G0857 Ceratophyllum demersum HOM05D005966 ORTHO05D007584 1.7e-11 75.5 68 55.9
CAN.G1289.8 Capsicum annuum HOM05D005966 ORTHO05D007584 4.3e-10 70.9 55 56.4
TAR626G0958 Trochodendron aralioides HOM05D005966 ORTHO05D007584 2.0e-07 62.0 37 83.8
AUR62041250 Chenopodium quinoa HOM05D005966 ORTHO05D007584 2.6e-07 61.6 51 62.7
TAR362G1246 Trochodendron aralioides HOM05D005966 ORTHO05D007584 9.8e-07 59.7 37 81.1


User provided reference genes

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