Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 2.1e-209 732.3 402 100.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 7.4e-207 723.8 402 99.5
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 2.1e-206 722.2 402 99.3
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.7e-177 624.8 403 86.8
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.7e-177 624.8 403 86.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 3.3e-175 618.6 405 86.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.3e-171 606.7 404 82.9
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 5.7e-167 591.3 406 83.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.8e-166 589.0 406 83.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 3.7e-166 588.6 406 83.5
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.4e-165 586.6 423 79.2
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.4e-165 585.9 406 83.0
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.7e-164 582.4 404 80.2
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 8.5e-163 577.4 402 79.1
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 5.5e-162 574.7 402 81.6
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 8.0e-161 570.9 405 80.5
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.8e-157 559.7 402 80.3
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.7e-156 555.8 402 81.1
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.9e-154 549.7 402 80.8
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.5e-151 540.0 400 78.2
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 8.9e-144 514.2 402 73.6
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.3e-136 489.6 361 76.2
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.0e-136 488.8 409 69.4
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 6.8e-136 488.0 328 80.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.9e-134 482.6 420 68.6
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 3.2e-133 479.2 424 68.9
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 1.6e-132 476.9 424 66.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.6e-132 475.3 316 85.4
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 3.9e-131 472.2 409 68.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.5e-130 470.3 348 79.3
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 8.1e-129 464.5 408 68.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 2.3e-128 463.0 409 69.7
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 3.1e-128 462.6 409 67.2
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 4.0e-128 462.2 410 68.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 8.9e-128 461.1 408 68.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.2e-127 460.7 409 68.9
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 7.5e-127 458.0 409 67.5
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 1.7e-126 456.8 415 66.0
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.9e-126 456.1 417 66.7
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 3.2e-125 452.6 422 64.9
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.2e-125 452.6 405 66.2
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.2e-124 450.7 412 64.3
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 5.1e-123 445.3 420 65.7
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 6.6e-123 444.9 406 66.3
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 4.3e-122 442.2 407 66.3
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.0e-120 435.6 437 63.4
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.0e-119 433.3 408 64.0
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.6e-119 433.0 411 64.5
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 4.4e-119 432.2 410 63.7
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 7.6e-119 431.4 417 63.5
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 7.6e-119 431.4 409 61.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.9e-118 429.5 410 64.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.9e-118 428.7 408 65.2
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.4e-118 428.3 408 65.0
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 8.4e-118 427.9 406 65.0
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.9e-117 426.8 408 64.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 6.0e-116 421.8 408 64.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 7.8e-116 421.4 414 63.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.7e-115 420.2 355 68.2
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 6.6e-115 418.3 355 68.7
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.6e-115 418.3 411 64.0
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 6.6e-115 418.3 408 63.7
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.9e-114 416.8 406 63.8
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 3.3e-114 416.0 399 62.9
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.3e-114 416.0 355 68.5
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 7.3e-114 414.8 410 62.9
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 1.6e-113 413.7 435 60.9
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.1e-113 413.3 412 61.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 6.2e-113 411.8 408 62.5
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 3.1e-112 409.5 408 62.7
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 5.2e-112 408.7 408 63.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 6.9e-112 408.3 342 70.5
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.5e-111 407.1 420 60.7
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.4e-111 405.6 410 62.0
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.3e-110 404.1 407 62.7
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 1.7e-110 403.7 406 61.3
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.8e-110 402.5 410 61.5
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.9e-110 402.1 407 61.2
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 8.4e-110 401.4 436 60.6
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 8.4e-110 401.4 444 60.4
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-109 401.0 406 61.1
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 2.4e-109 399.8 407 62.7
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.4e-109 399.8 409 62.1
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 5.4e-109 398.7 419 59.7
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 7.1e-109 398.3 413 61.3
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.3e-109 397.9 406 60.8
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.1e-108 396.7 414 59.7
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.5e-108 396.0 412 60.7
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 7.8e-108 394.8 410 60.5
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.3e-107 393.3 410 61.2
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 3.9e-107 392.5 434 59.4
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 5.1e-107 392.1 429 58.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 5.1e-107 392.1 408 60.0
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 8.7e-107 391.3 429 59.2
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.7e-107 391.3 404 61.4
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.5e-106 390.6 412 57.5
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.3e-106 389.0 409 60.6
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 5.6e-106 388.7 426 59.2
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 5.6e-106 388.7 426 59.2
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 2.1e-105 386.7 412 60.9
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-105 386.3 396 60.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.8e-105 386.3 409 60.4
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.6e-105 386.0 404 59.9
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.8e-104 383.6 411 60.1
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.1e-104 382.9 436 58.7
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.2e-103 380.9 425 58.6
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 4.5e-103 379.0 439 57.9
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 7.6e-103 378.3 340 63.5
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.7e-102 377.1 437 57.9
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 5.4e-101 372.1 402 59.7
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.2e-100 370.9 410 58.3
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.6e-100 370.5 410 58.5
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.8e-99 367.1 338 66.3
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 3.4e-95 352.8 408 56.1
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 7.6e-95 351.7 339 64.9
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.7e-94 350.5 408 54.9
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.1e-93 347.8 440 53.2
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.5e-90 336.7 445 53.0
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 8.1e-89 331.6 414 55.1
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 3.1e-88 329.7 327 62.4
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 6.0e-84 315.5 350 58.9
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 6.9e-80 302.0 377 51.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 5.7e-74 282.3 341 52.5
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 2.4e-72 276.9 423 45.4
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-71 274.2 404 50.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 7.7e-71 271.9 347 54.5
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.1e-68 262.3 381 50.7
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.9e-67 259.6 377 51.2
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 1.3e-65 254.6 410 42.4
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.8e-65 253.4 245 65.3
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.4e-64 251.1 417 42.4
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 6.3e-57 225.7 287 54.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 5.2e-51 206.1 212 59.4
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 2.9e-46 190.3 285 47.4
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 8.5e-46 188.7 224 54.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.2e-45 186.4 219 55.7
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.6e-44 184.5 270 52.6
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.6e-44 184.5 270 52.6
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 2.1e-44 184.1 250 48.4
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.6e-44 183.3 319 43.3
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.7e-44 183.0 172 57.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.1e-40 171.8 279 40.1
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 5.2e-35 152.9 374 36.4
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 8.8e-35 152.1 207 48.8
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.0e-34 151.0 347 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.8e-31 139.0 394 35.0
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 2.5e-29 134.0 104 69.2
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 3.3e-29 133.7 109 68.8
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 9.5e-29 132.1 150 60.0
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.5e-23 113.6 215 40.9
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 3.9e-22 110.2 249 31.3
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.7e-17 94.7 124 59.7
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.5e-10 69.3 224 28.1
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 9.2e-08 62.4 122 39.3


User provided reference genes

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