Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 4.4e-275 950.7 473 100.0
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 4.1e-249 864.4 474 90.3
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 2.0e-248 862.1 474 90.1
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 3.8e-247 857.8 476 89.3
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 6.6e-247 857.1 475 89.9
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 6.8e-244 847.0 475 88.6
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 6.8e-244 847.0 475 88.4
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 8.9e-244 846.7 474 89.2
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 4.9e-242 840.9 476 87.8
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 1.4e-241 839.3 475 88.0
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 5.4e-241 837.4 475 87.4
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 9.2e-241 836.6 481 86.9
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 3.9e-239 831.2 475 87.8
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 5.0e-239 830.9 473 86.9
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 4.3e-238 827.8 473 86.5
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 2.1e-237 825.5 498 82.9
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 3.6e-237 824.7 474 85.4
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 6.2e-237 823.9 474 85.7
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 1.4e-236 822.8 473 85.8
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.2e-235 819.7 473 85.6
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 2.0e-235 818.9 473 86.0
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.7e-234 815.8 476 85.5
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.7e-234 815.8 475 85.5
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 3.7e-234 814.7 473 84.8
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 3.7e-234 814.7 473 84.1
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 8.3e-234 813.5 473 84.4
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.4e-233 812.8 476 85.7
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 4.1e-233 811.2 473 83.9
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 2.7e-232 808.5 473 84.4
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 4.6e-232 807.7 475 83.8
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 6.0e-232 807.4 478 84.1
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 6.0e-232 807.4 473 83.7
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 7.8e-232 807.0 475 84.0
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.7e-231 805.8 447 88.1
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.7e-231 805.8 475 83.6
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 3.9e-231 804.7 474 85.2
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 6.6e-231 803.9 476 84.9
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 6.6e-231 803.9 477 83.9
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 1.5e-230 802.7 477 84.3
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 3.3e-230 801.6 473 83.9
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 4.3e-230 801.2 515 78.8
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 7.3e-230 800.4 515 78.6
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.2e-229 797.3 515 78.3
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 6.2e-229 797.3 474 83.1
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 8.1e-229 797.0 472 82.6
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 8.1e-229 797.0 472 82.6
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.1e-228 796.6 515 78.3
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 1.1e-228 796.6 473 83.9
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 1.8e-228 795.8 471 83.4
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 1.8e-228 795.8 472 84.3
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 2.3e-228 795.4 472 83.5
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 4.0e-228 794.7 471 83.2
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 4.0e-228 794.7 472 82.8
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 5.2e-228 794.3 471 83.0
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 5.2e-228 794.3 474 84.2
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 2.0e-227 792.3 475 83.4
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 2.0e-227 792.3 475 83.4
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 4.4e-227 791.2 475 83.2
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 4.4e-227 791.2 473 82.0
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 9.8e-227 790.0 480 82.7
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 1.3e-226 789.6 501 79.8
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.3e-226 789.6 474 84.2
CsaV3_1G001500 Cucumis sativus L. HOM05D003618 ORTHO05D004302 2.2e-226 788.9 473 82.9
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 2.2e-226 788.9 467 83.9
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 8.3e-226 786.9 475 82.1
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.9e-225 785.8 474 82.3
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 2.4e-225 785.4 477 82.8
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 3.2e-225 785.0 480 82.5
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 3.2e-225 785.0 475 82.7
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.1e-225 784.6 473 82.5
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 5.4e-225 784.3 471 81.5
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 7.1e-225 783.9 479 82.5
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 9.2e-225 783.5 475 82.5
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 9.2e-225 783.5 480 81.9
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 9.2e-225 783.5 461 84.6
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 2.1e-224 782.3 472 82.4
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 2.7e-224 781.9 471 80.9
MELO3C026292.2 Cucumis melo HOM05D003618 ORTHO05D004302 2.7e-224 781.9 473 81.6
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 4.6e-224 781.2 475 81.9
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 4.6e-224 781.2 470 81.9
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 7.8e-224 780.4 478 81.8
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 1.0e-223 780.0 469 82.7
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 1.0e-223 780.0 480 82.1
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 1.3e-223 779.6 473 81.0
Ciclev10020004m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.7e-223 779.2 474 81.2
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 2.3e-223 778.9 472 81.1
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 3.0e-223 778.5 468 83.8
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.9e-223 778.1 472 81.8
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.9e-223 778.1 472 81.8
CDE07G0194 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 8.6e-223 776.9 473 82.0
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 2.5e-222 775.4 478 81.0
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 7.3e-222 773.9 482 81.1
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 7.3e-222 773.9 474 82.3
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 1.2e-221 773.1 472 81.4
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.2e-221 773.1 468 81.4
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 2.1e-221 772.3 498 78.9
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 3.6e-221 771.5 473 81.4
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 6.2e-221 770.8 473 80.8
Gohir.A11G001200 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.8e-220 769.2 479 81.2
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 5.2e-220 767.7 507 77.3
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 2.6e-219 765.4 461 81.8
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 3.4e-219 765.0 474 80.6
Gorai.007G001700 Gossypium raimondii HOM05D003618 ORTHO05D004302 4.4e-219 764.6 471 81.3
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 7.6e-219 763.8 473 79.5
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 1.3e-218 763.1 477 80.9
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 1.3e-218 763.1 469 79.5
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 3.8e-218 761.5 471 79.4
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 5.4e-217 757.7 502 77.5
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 5.4e-217 757.7 470 79.6
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.6e-216 756.1 484 79.3
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.6e-216 756.1 484 79.3
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.6e-216 756.1 484 79.3
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.1e-214 750.0 474 80.6
ECA232G0993 Erigeron canadensis HOM05D003618 ORTHO05D004302 1.9e-214 749.2 467 79.9
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.1e-213 745.7 445 81.8
Migut.I00014 Erythranthe guttata HOM05D003618 ORTHO05D004302 2.4e-212 742.3 465 78.5
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 2.4e-212 742.3 465 80.9
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 8.9e-212 740.3 489 76.7
SEGI_37686 Sequoiadendron giganteum HOM05D003618 ORTHO05D004302 1.3e-210 736.5 461 79.2
Phvul.010G023000 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 4.2e-209 731.5 469 76.3
Lalb_Chr12g0209981 Lupinus albus HOM05D003618 ORTHO05D004302 7.1e-209 730.7 467 76.4
AUR62008212 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.2e-208 729.9 471 75.6
AUR62030965 Chenopodium quinoa HOM05D003618 ORTHO05D004302 1.6e-208 729.6 440 79.8
arahy.Tifrunner.gnm1.ann1.NJJ8BU Arachis hypogaea HOM05D003618 ORTHO05D004302 1.0e-207 726.9 466 76.6
Aa31LG11G890 Aethionema arabicum HOM05D003618 ORTHO05D004302 1.3e-207 726.5 477 75.9
Glyma.16G089000 Glycine max HOM05D003618 ORTHO05D004302 3.0e-207 725.3 469 76.8
arahy.Tifrunner.gnm1.ann1.5ZTX8H Arachis hypogaea HOM05D003618 ORTHO05D004302 5.1e-207 724.5 466 76.4
Ca_23215_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 2.8e-205 718.8 468 76.1
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 3.6e-205 718.4 474 78.3
TPR.G31563 Trifolium pratense HOM05D003618 ORTHO05D004302 4.8e-205 718.0 469 75.5
VMungo0331G0859 Vigna mungo HOM05D003618 ORTHO05D004302 3.1e-204 715.3 469 75.1
Medtr8g012565 Medicago truncatula HOM05D003618 ORTHO05D004302 9.0e-204 713.8 469 75.3
Lj3g0025861 Lotus japonicus HOM05D003618 ORTHO05D004302 2.2e-202 709.1 468 74.4
Hund09436 Selenicereus undatus HOM05D003618 ORTHO05D004302 3.8e-202 708.4 466 73.4
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 1.4e-201 706.4 431 79.4
Aa31LG11G900 Aethionema arabicum HOM05D003618 ORTHO05D004302 5.4e-201 704.5 459 75.6
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 8.7e-199 697.2 384 88.0
Cpa.g.sc76.64 Carica papaya HOM05D003618 ORTHO05D004302 5.6e-198 694.5 383 88.8
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 3.8e-194 681.8 444 76.4
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 9.3e-193 677.2 434 74.9
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 1.1e-190 670.2 466 70.0
Mapoly0064s0074 Marchantia polymorpha HOM05D003618 ORTHO05D004302 4.0e-188 661.8 414 74.2
Pp3c8_12290 Physcomitrium patens HOM05D003618 ORTHO05D004302 4.0e-188 661.8 420 76.0
Pp3c24_8730 Physcomitrium patens HOM05D003618 ORTHO05D004302 9.0e-188 660.6 420 76.2
CDE06G1773 Ceratophyllum demersum HOM05D003618 ORTHO05D004302 1.0e-186 657.1 473 72.9
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 1.5e-179 633.3 370 83.5
HanXRQChr16g0517311 Helianthus annuus HOM05D003618 ORTHO05D004302 6.5e-178 627.9 469 67.2
CBR_g11924 Chara braunii HOM05D003618 ORTHO05D004302 1.7e-173 613.2 409 72.1
Aa31sc1732G20 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.7e-173 612.1 406 74.9
Cre12.g546050 Chlamydomonas reinhardtii HOM05D003618 ORTHO05D004302 7.2e-169 597.8 413 70.5
CAN.G781.11 Capsicum annuum HOM05D003618 ORTHO05D004302 1.6e-168 596.7 324 88.6
HanXRQChr05g0156211 Helianthus annuus HOM05D003618 ORTHO05D004302 3.3e-166 589.0 339 84.7
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 2.0e-163 579.7 483 66.9
Aa31sc1732G10 Aethionema arabicum HOM05D003618 ORTHO05D004302 3.8e-162 575.5 337 83.1
PRCOL_00002139 Prasinoderma coloniale HOM05D003618 ORTHO05D004302 6.7e-151 538.1 416 63.7
Cc00_g09910 Coffea canephora HOM05D003618 ORTHO05D004302 9.1e-140 501.1 302 80.8
MCO15G646 Micromonas commoda HOM05D003618 ORTHO05D004302 1.2e-131 474.2 350 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 5.0e-130 468.8 321 74.1
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 5.0e-130 468.8 293 79.2
Psat4g204400 Pisum sativum HOM05D003618 ORTHO05D004302 3.2e-116 422.9 295 72.5
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.4e-108 397.5 256 80.1
Zm00001eb334380 Zea mays HOM05D003618 ORTHO05D004302 1.7e-98 364.0 196 88.8
Gohir.D11G000766 Gossypium hirsutum HOM05D003618 ORTHO05D004302 1.2e-94 351.3 189 87.8
Sc12g0005330 Simmondsia chinensis HOM05D003618 ORTHO05D004302 4.3e-89 332.8 185 83.2
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 2.0e-86 323.9 228 75.0
FvH4_4g01210 Fragaria vesca HOM05D003618 ORTHO05D004302 6.4e-85 318.9 263 66.5
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.7e-82 308.9 224 73.2
Cc04_g14070 Coffea canephora HOM05D003618 ORTHO05D004302 4.2e-68 263.1 224 63.8
VMungo0647G0692 Vigna mungo HOM05D003618 ORTHO05D004302 1.2e-62 245.0 158 79.1
Hund09437 Selenicereus undatus HOM05D003618 ORTHO05D004302 7.7e-62 242.3 380 42.4
FvH4_3g27741 Fragaria vesca HOM05D003618 ORTHO05D004302 3.8e-61 240.0 147 84.4
Lsat_1_v5_gn_0_46101 Lactuca sativa HOM05D003618 ORTHO05D004302 7.2e-60 235.7 356 38.8
FvH4_1g09716 Fragaria vesca HOM05D003618 ORTHO05D004302 1.5e-49 201.4 153 71.9
FvH4_1g09717 Fragaria vesca HOM05D003618 ORTHO05D004302 2.4e-31 141.0 71 94.4
FAN09G3822 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.1e-31 140.6 119 62.2
DCAR_016639 Daucus carota HOM05D003618 ORTHO05D003669 1.4e-26 125.2 75 81.3
RcHm_v2.0_Chr2g0151191 Rosa chinensis HOM05D001812 ORTHO05D004302 4.4e-25 120.2 73 82.2
RcHm_v2.0_Chr1g0360281 Rosa chinensis HOM05D003618 ORTHO05D004302 7.0e-23 112.8 73 76.7
Hma1.2p1_0549F.1_g176800 Hydrangea macrophylla HOM05D003618 ORTHO05D004302 1.7e-13 81.6 49 83.7
Cc00_g21160 Coffea canephora HOM05D003618 ORTHO05D153345 2.3e-13 81.3 47 78.7
Cc00_g09880 Coffea canephora HOM05D003618 ORTHO05D004302 7.3e-12 76.3 37 91.9
SGA_v2.0_scaffold45G17201 Striga asiatica HOM05D003618 ORTHO05D404764 3.1e-10 70.9 168 38.1
CSS0007150 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.5e-09 68.6 57 63.2
CSS0047950 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.5e-09 68.6 57 63.2
CSS0000585 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D113077 1.2e-06 58.9 38 76.3
CSS0042990 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 1.6e-06 58.5 50 64.0


User provided reference genes

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