Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 4.5e-310 1067.4 667 100.0
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 3.5e-254 881.7 683 84.2
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 3.3e-244 848.6 684 79.1
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 1.1e-242 843.6 673 83.1
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 4.0e-242 841.6 667 83.4
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 7.1e-239 830.9 665 77.7
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.3e-236 820.8 683 81.7
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 9.0e-234 813.9 667 80.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.5e-233 813.1 651 82.8
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 7.6e-233 810.8 662 81.9
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 4.9e-232 808.1 665 78.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 6.7e-229 797.7 672 79.0
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.9e-228 796.2 661 80.9
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 5.6e-228 794.7 688 78.8
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.4e-225 785.4 679 78.9
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.9e-224 782.3 661 79.0
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 2.1e-222 776.2 667 77.2
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 3.0e-221 772.3 678 77.6
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 3.7e-219 765.4 683 74.2
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 4.8e-219 765.0 673 75.3
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.0e-217 759.6 691 75.7
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 3.4e-217 758.8 703 70.0
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 8.4e-216 754.2 656 77.7
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.4e-215 753.4 679 76.0
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.1e-214 749.6 663 76.9
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 3.5e-214 748.8 669 75.5
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 7.9e-214 747.7 680 76.3
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.3e-213 746.9 666 77.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 5.1e-213 745.0 644 77.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 5.1e-213 745.0 644 77.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 5.1e-213 745.0 644 77.8
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 8.7e-213 744.2 629 79.5
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 4.3e-212 741.9 674 75.7
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-211 740.3 656 76.7
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.3e-211 740.3 656 76.7
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 1.3e-211 740.3 655 76.6
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.6e-211 740.0 647 77.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.7e-211 738.8 650 76.8
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 6.3e-211 738.0 654 76.5
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 1.1e-210 737.3 681 74.7
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 2.4e-210 736.1 651 76.2
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.3e-210 734.9 650 76.5
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 3.4e-209 732.3 684 64.8
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 2.2e-208 729.6 677 73.7
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 2.2e-208 729.6 677 73.9
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 2.9e-208 729.2 682 70.2
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.0e-208 728.4 646 75.9
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 6.5e-208 728.0 664 75.0
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.5e-208 727.6 651 75.9
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 8.5e-208 727.6 678 73.0
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.2e-207 725.3 669 74.0
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 4.2e-207 725.3 671 71.4
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 9.4e-207 724.2 682 69.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 2.7e-206 722.6 678 73.3
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 3.6e-206 722.2 673 73.8
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 7.9e-206 721.1 673 70.0
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.8e-205 719.9 673 73.4
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.8e-205 719.9 673 73.7
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.5e-204 716.8 655 74.7
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 7.4e-204 714.5 663 74.5
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.7e-203 712.2 641 75.8
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.7e-203 712.2 673 67.0
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 1.8e-202 709.9 669 72.9
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.0e-201 706.4 680 68.2
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.0e-201 706.4 656 73.6
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 2.6e-201 706.1 568 81.2
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 7.7e-201 704.5 666 71.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 7.7e-201 704.5 679 73.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 7.7e-201 704.5 672 72.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.0e-200 704.1 676 73.2
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 2.2e-200 703.0 676 75.9
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 8.5e-200 701.0 668 73.4
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.4e-199 700.3 679 73.5
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 2.5e-199 699.5 662 73.9
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 2.5e-199 699.5 667 73.5
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 5.5e-199 698.4 655 75.0
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.2e-198 697.2 675 74.7
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.1e-198 696.4 616 76.9
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 2.7e-198 696.0 642 71.0
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 4.7e-198 695.3 675 74.7
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 6.1e-198 694.9 671 73.6
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 7.9e-198 694.5 688 72.8
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.4e-197 693.7 660 67.1
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.3e-197 693.0 668 74.1
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 6.7e-197 691.4 676 74.6
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 5.7e-196 688.3 646 74.1
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.2e-195 686.4 568 77.6
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 4.8e-195 685.3 653 71.8
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.8e-194 683.3 681 69.2
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 9.1e-194 681.0 688 70.3
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.2e-193 680.6 671 70.5
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.0e-193 679.9 686 66.5
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 2.0e-193 679.9 688 69.9
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 1.5e-191 673.7 574 69.9
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.2e-191 672.5 655 72.1
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 5.5e-191 671.8 673 72.1
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 2.7e-190 669.5 659 61.9
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 2.0e-185 653.3 672 70.5
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 4.5e-185 652.1 671 70.2
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 7.2e-183 644.8 699 68.2
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.6e-182 643.7 575 77.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 2.3e-181 639.8 675 69.3
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.4e-178 630.6 645 69.1
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.5e-175 619.8 600 72.5
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.6e-172 609.8 663 63.0
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 4.4e-172 609.0 715 56.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 1.7e-171 607.1 663 61.1
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 7.7e-169 598.2 536 78.7
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 6.8e-165 585.1 663 63.3
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 5.7e-164 582.0 607 65.7
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.0e-161 573.5 663 63.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 2.6e-156 556.6 688 57.4
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 7.3e-151 538.5 527 75.9
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 6.8e-149 531.9 669 64.1
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.4e-146 524.2 614 58.6
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.3e-143 512.7 666 54.5
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.9e-138 497.3 525 73.3
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.1e-135 488.0 724 58.0
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 3.1e-133 479.9 517 71.6
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.4e-132 476.1 616 55.5
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 5.8e-132 475.7 507 67.1
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 1.3e-128 464.5 526 62.4
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.4e-123 445.7 255 83.9
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 6.2e-118 429.1 320 81.9
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.1e-117 426.8 511 60.3
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.3e-99 368.2 293 68.3
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.9e-98 364.4 308 64.9
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.0e-96 358.6 452 46.7
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 8.7e-96 355.5 487 63.7
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 1.4e-88 331.6 294 63.3
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 2.3e-88 330.9 476 53.4
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.0e-87 327.8 221 75.6
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 8.8e-80 302.4 241 60.2
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 4.5e-76 290.0 304 55.6
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.0e-75 288.9 304 83.6
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 1.3e-70 271.9 258 58.9
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 8.2e-70 269.2 171 76.0
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 1.4e-64 251.9 319 69.0
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 3.7e-62 243.8 216 67.6
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 6.1e-57 226.5 138 78.3
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 5.9e-52 209.9 302 45.4
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.8e-48 198.4 215 54.4
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 6.8e-48 196.4 298 43.0
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 2.9e-46 191.0 111 82.0
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.0e-44 184.9 289 75.4
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 2.0e-44 184.9 123 67.5
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 4.6e-44 183.7 111 79.3
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 8.0e-41 172.9 84 94.0
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 1.0e-40 172.6 167 55.1
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.0e-31 141.7 570 31.9
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 5.8e-31 140.2 178 53.4
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-30 137.5 323 52.9
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 6.4e-30 136.7 101 68.3
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.4e-29 135.6 150 50.0
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.4e-29 134.8 171 47.4
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.2e-29 132.9 101 68.3
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.6e-28 132.1 110 62.7
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.6e-28 132.1 94 69.1
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 8.6e-27 126.3 544 30.7
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 4.0e-24 117.5 176 36.9
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 1.0e-19 102.8 69 69.6
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 5.2e-16 90.5 67 64.2
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 6.9e-16 90.1 73 63.0
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.6e-15 88.2 67 65.7
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 3.4e-15 87.8 62 66.1
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 1.9e-13 82.0 56 67.9
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 2.4e-13 81.6 57 66.7
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 2.3e-11 75.1 116 41.4
A02p18780 Brassica napus HOM05D003766 ORTHO05D004607 1.5e-10 72.4 84 51.2
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 5.6e-10 70.5 53 62.3
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 5.6e-10 70.5 162 37.0
A02p18790 Brassica napus HOM05D003766 ORTHO05D004607 4.8e-09 67.4 48 58.3
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 1.4e-08 65.9 44 65.9
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 6.9e-08 63.5 53 56.6
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 1.2e-07 62.8 48 60.4
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.6e-07 61.6 78 43.6
BcaC04g21445 Brassica carinata HOM05D000349 ORTHO05D001782 7.6e-07 60.1 43 62.8
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 3.8e-06 57.8 66 51.5


User provided reference genes

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