Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 1.9e-71 272.3 127 100.0
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 1.1e-58 229.9 112 97.3
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 1.4e-39 166.4 90 87.8
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 3.5e-38 161.8 98 77.6
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 3.5e-38 161.8 98 77.6
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 1.8e-37 159.5 121 65.3
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 1.8e-37 159.5 121 64.5
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 2.3e-37 159.1 121 64.5
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 2.3e-37 159.1 121 64.5
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 3.0e-37 158.7 121 65.3
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 3.9e-37 158.3 121 65.3
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 3.9e-37 158.3 101 72.3
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 3.9e-37 158.3 90 82.2
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 5.1e-37 157.9 90 81.1
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 5.1e-37 157.9 123 65.9
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 6.7e-37 157.5 98 75.5
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 8.7e-37 157.1 84 85.7
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 8.7e-37 157.1 121 64.5
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 8.7e-37 157.1 121 64.5
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 8.7e-37 157.1 121 63.6
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 1.1e-36 156.8 98 75.5
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 1.5e-36 156.4 90 81.1
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 1.9e-36 156.0 121 63.6
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 3.3e-36 155.2 121 63.6
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 4.3e-36 154.8 121 63.6
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 4.3e-36 154.8 121 64.5
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 5.6e-36 154.5 121 62.8
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 5.6e-36 154.5 121 62.8
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 7.4e-36 154.1 121 62.8
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 7.4e-36 154.1 90 82.2
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 7.4e-36 154.1 121 62.8
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 1.3e-35 153.3 121 63.6
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.6e-35 152.9 121 63.6
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 2.1e-35 152.5 121 62.0
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 2.1e-35 152.5 121 62.8
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 2.8e-35 152.1 121 63.6
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 2.8e-35 152.1 121 62.8
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.8e-35 152.1 121 63.6
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 3.7e-35 151.8 121 62.8
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 3.7e-35 151.8 99 70.7
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 3.7e-35 151.8 121 61.2
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 4.8e-35 151.4 90 80.0
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 4.8e-35 151.4 121 62.0
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 4.8e-35 151.4 90 78.9
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 4.8e-35 151.4 90 80.0
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 6.2e-35 151.0 103 68.9
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 8.1e-35 150.6 90 77.8
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 8.1e-35 150.6 90 77.8
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 1.1e-34 150.2 123 63.4
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.1e-34 150.2 121 62.0
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.1e-34 150.2 121 61.2
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 1.1e-34 150.2 121 61.2
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 1.1e-34 150.2 98 72.4
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 1.4e-34 149.8 90 78.9
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 1.4e-34 149.8 90 78.9
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 1.4e-34 149.8 90 78.9
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 1.4e-34 149.8 90 76.7
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 1.8e-34 149.4 90 78.9
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 2.4e-34 149.1 98 71.4
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 2.4e-34 149.1 83 83.1
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 2.4e-34 149.1 121 61.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.4e-34 149.1 83 83.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 3.1e-34 148.7 90 76.7
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 3.1e-34 148.7 103 70.9
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.1e-34 148.7 121 61.2
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 3.1e-34 148.7 121 62.0
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 3.1e-34 148.7 90 77.8
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 4.0e-34 148.3 121 60.3
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 6.9e-34 147.5 121 59.5
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 6.9e-34 147.5 85 80.0
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 1.2e-33 146.7 121 60.3
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 1.5e-33 146.4 123 61.0
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.5e-33 146.4 83 80.7
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 2.6e-33 145.6 98 68.4
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 3.4e-33 145.2 123 60.2
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 4.5e-33 144.8 90 75.6
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 1.3e-32 143.3 126 57.9
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 4.9e-32 141.4 98 66.3
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 1.9e-31 139.4 103 62.1
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 3.2e-31 138.7 103 62.1
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 7.1e-31 137.5 90 68.9
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 7.1e-31 137.5 103 62.1
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 2.1e-30 136.0 103 61.2
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 2.1e-30 136.0 103 61.2
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 2.1e-30 136.0 90 67.8
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 2.7e-30 135.6 121 56.2
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 3.5e-30 135.2 103 61.2
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 4.6e-30 134.8 90 68.9
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 4.6e-30 134.8 90 68.9
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 6.0e-30 134.4 90 68.9
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 6.0e-30 134.4 90 68.9
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 6.0e-30 134.4 103 61.2
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 1.0e-29 133.7 103 58.3
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 5.6e-28 127.9 95 57.9
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 3.7e-27 125.2 90 58.9
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 5.8e-25 117.9 121 54.5
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 1.2e-22 110.2 69 72.5
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 6.7e-21 104.4 90 55.6
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 5.7e-20 101.3 98 55.1
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 9.0e-18 94.0 90 56.7
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 1.6e-14 83.2 43 88.4
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 3.6e-14 82.0 67 61.2
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 6.1e-14 81.3 40 92.5
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 7.9e-14 80.9 63 60.3
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 1.0e-13 80.5 81 53.1
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 3.0e-13 79.0 63 55.6
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 2.5e-12 75.9 43 79.1
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 5.7e-12 74.7 43 81.4
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 9.7e-12 73.9 48 72.9
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.7e-11 73.2 52 69.2
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 1.7e-11 73.2 42 76.2
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 2.2e-11 72.8 50 70.0
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 4.8e-11 71.6 58 58.6
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 1.8e-10 69.7 90 45.6
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 5.9e-09 64.7 90 44.4


User provided reference genes

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