Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0007280 Lotus japonicus HOM05D001389 ORTHO05D236476 5.0e-179 630.9 309 100.0
VMungo1127G0819 Vigna mungo HOM05D001389 ORTHO05D002892 1.3e-09 68.2 121 32.2
Lalb_Chr03g0031961 Lupinus albus HOM05D001389 ORTHO05D002892 1.7e-09 67.8 126 30.2
VMungo1127G2030 Vigna mungo HOM05D001389 ORTHO05D002892 1.7e-09 67.8 155 30.3
Phvul.011G180300 Phaseolus vulgaris HOM05D001389 ORTHO05D002892 2.9e-09 67.0 124 29.8
Hund12038 Selenicereus undatus HOM05D001389 ORTHO05D002892 6.4e-09 65.9 124 31.5
TPR.G30142 Trifolium pratense HOM05D001389 ORTHO05D002892 6.4e-09 65.9 124 29.8
Glyma.08G233300 Glycine max HOM05D001389 ORTHO05D002892 8.4e-09 65.5 121 30.6
Lj2C7T6 Lonicera japonica HOM05D001389 ORTHO05D002892 8.4e-09 65.5 172 26.2
Lj3g0008765 Lotus japonicus HOM05D001389 ORTHO05D002892 8.4e-09 65.5 124 29.8
Medtr8g447080 Medicago truncatula HOM05D001389 ORTHO05D002892 8.4e-09 65.5 124 30.6
Aqoxy1G01381 Aquilegia oxysepala HOM05D001389 ORTHO05D002892 1.1e-08 65.1 135 30.4
Hund08739 Selenicereus undatus HOM05D001389 ORTHO05D002892 1.4e-08 64.7 125 30.4
THA.LOC104812395 Tarenaya hassleriana HOM05D001389 ORTHO05D002892 1.9e-08 64.3 140 30.0
Ah.09g231460 Amaranthus hybridus HOM05D001389 ORTHO05D002892 3.2e-08 63.5 129 31.0
Glyma.15G219100 Glycine max HOM05D001389 ORTHO05D002892 3.2e-08 63.5 124 29.0
Phvul.011G180200 Phaseolus vulgaris HOM05D001389 ORTHO05D002892 3.2e-08 63.5 121 30.6
Aa31LG4G1700 Aethionema arabicum HOM05D001389 ORTHO05D002892 4.2e-08 63.2 129 27.9
Carub.0001s1616 Capsella rubella HOM05D001389 ORTHO05D002892 5.4e-08 62.8 125 32.0
CsaV3_6G012630 Cucumis sativus L. HOM05D001389 ORTHO05D002892 5.4e-08 62.8 124 30.6
PSO063G3640 Papaver somniferum HOM05D001389 ORTHO05D002892 5.4e-08 62.8 132 28.8
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 5.4e-08 62.8 139 30.2
BcaB02g08680 Brassica carinata HOM05D001389 ORTHO05D002892 7.1e-08 62.4 124 29.0
Lsat_1_v5_gn_4_46521 Lactuca sativa HOM05D001389 ORTHO05D002892 7.1e-08 62.4 124 29.8
Potri.010G175000 Populus trichocarpa HOM05D001389 ORTHO05D002892 7.1e-08 62.4 159 29.6
Actinidia03632 Actinidia chinensis HOM05D001389 ORTHO05D002892 9.3e-08 62.0 132 27.3
Ca_22975_v3 Cicer arietinum L. HOM05D001389 ORTHO05D002892 9.3e-08 62.0 117 29.9
MELO3C013563.2 Cucumis melo HOM05D001389 ORTHO05D002892 9.3e-08 62.0 124 30.6
TPR.G3602 Trifolium pratense HOM05D001389 ORTHO05D002892 9.3e-08 62.0 122 26.2
vmacro09763 Vaccinium macrocarpon HOM05D001389 ORTHO05D002892 9.3e-08 62.0 132 27.3
EL10Ac8g19097 Beta vulgaris HOM05D001389 ORTHO05D002892 1.2e-07 61.6 127 27.6
Glyma.08G233500 Glycine max HOM05D001389 ORTHO05D002892 1.2e-07 61.6 124 29.0
BcaC03g15884 Brassica carinata HOM05D001389 ORTHO05D002892 1.6e-07 61.2 124 29.0
Aa31LG4G1690 Aethionema arabicum HOM05D001389 ORTHO05D002892 2.1e-07 60.8 121 28.9
AUR62028968 Chenopodium quinoa HOM05D001389 ORTHO05D002892 2.1e-07 60.8 127 26.8
Migut.M01495 Erythranthe guttata HOM05D001389 ORTHO05D002892 2.1e-07 60.8 124 29.8
HanXRQChr16g0520371 Helianthus annuus HOM05D001389 ORTHO05D002892 2.1e-07 60.8 124 29.0
Medtr2g063570 Medicago truncatula HOM05D001389 ORTHO05D002892 2.1e-07 60.8 122 28.7
QL04p010778 Quercus lobata HOM05D001389 ORTHO05D002892 2.1e-07 60.8 155 27.7
QL04p095775 Quercus lobata HOM05D001389 ORTHO05D002892 2.1e-07 60.8 155 27.7
Sabra10G0134800 Salix brachista HOM05D001389 ORTHO05D002892 2.1e-07 60.8 124 29.8
AT1G79340 Arabidopsis thaliana HOM05D001389 ORTHO05D002892 2.7e-07 60.5 155 28.4
A07p44410 Brassica napus HOM05D001389 ORTHO05D002892 2.7e-07 60.5 124 29.0
CAN.G710.30 Capsicum annuum HOM05D001389 ORTHO05D002892 2.7e-07 60.5 132 27.3
Duzib268G1402 Durio zibethinus HOM05D001389 ORTHO05D002892 2.7e-07 60.5 167 25.7
PSO170G2397 Papaver somniferum HOM05D001389 ORTHO05D002892 2.7e-07 60.5 132 27.3
THA.LOC104808147 Tarenaya hassleriana HOM05D001389 ORTHO05D002892 2.7e-07 60.5 124 29.0
BraA07t31950Z Brassica rapa HOM05D001389 ORTHO05D002892 3.5e-07 60.1 124 29.0
Carub.0002s2619 Capsella rubella HOM05D001389 ORTHO05D002892 3.5e-07 60.1 155 28.4
AUR62025205 Chenopodium quinoa HOM05D001389 ORTHO05D002892 3.5e-07 60.1 127 26.8
DCAR_009667 Daucus carota HOM05D001389 ORTHO05D002892 3.5e-07 60.1 143 28.0
PSO017G2219 Papaver somniferum HOM05D001389 ORTHO05D002892 3.5e-07 60.1 132 28.0
QL04p010765 Quercus lobata HOM05D001389 ORTHO05D002892 3.5e-07 60.1 155 28.4
QL04p095794 Quercus lobata HOM05D001389 ORTHO05D002892 3.5e-07 60.1 155 28.4
TPR.G34967 Trifolium pratense HOM05D001389 ORTHO05D036508 3.5e-07 60.1 162 27.8
Ah.14g084960 Amaranthus hybridus HOM05D001389 ORTHO05D002892 4.6e-07 59.7 120 28.3
AL2G39950 Arabidopsis lyrata HOM05D001389 ORTHO05D002892 4.6e-07 59.7 124 29.0
HanXRQChr01g0018051 Helianthus annuus HOM05D001389 ORTHO05D002892 4.6e-07 59.7 140 28.6
Psat0s11g0080 Pisum sativum HOM05D001389 ORTHO05D002892 4.6e-07 59.7 125 29.6
Prupe.4G126000 Prunus persica HOM05D001389 ORTHO05D002892 4.6e-07 59.7 124 29.0
Atru.chr1.21 Acer truncatum HOM05D001389 ORTHO05D002892 6.0e-07 59.3 155 27.7
A02p22750 Brassica napus HOM05D001389 ORTHO05D002892 6.0e-07 59.3 124 28.2
C06p53220 Brassica napus HOM05D001389 ORTHO05D002892 6.0e-07 59.3 124 29.0
C08p44510 Brassica napus HOM05D001323 ORTHO05D001223 6.0e-07 59.3 124 29.8
BolC6t40340H Brassica oleracea HOM05D001389 ORTHO05D002892 6.0e-07 59.3 124 29.0
BraA02t07277Z Brassica rapa HOM05D001389 ORTHO05D002892 6.0e-07 59.3 124 28.2
CARHR072980 Cardamine hirsuta HOM05D001389 ORTHO05D002892 6.0e-07 59.3 124 28.2
Gohir.D13G130500 Gossypium hirsutum HOM05D001389 ORTHO05D002892 6.0e-07 59.3 121 27.3
Gorai.013G146600 Gossypium raimondii HOM05D001389 ORTHO05D002892 6.0e-07 59.3 121 27.3
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 6.0e-07 59.3 181 23.8
PSO210G7753 Papaver somniferum HOM05D001389 ORTHO05D002892 6.0e-07 59.3 132 26.5
Sp1g14570 Schrenkiella parvula HOM05D001389 ORTHO05D002892 6.0e-07 59.3 124 30.6
TWI38G1380 Tripterygium wilfordii HOM05D001389 ORTHO05D002892 6.0e-07 59.3 132 25.8
TWI38G1819 Tripterygium wilfordii HOM05D001389 ORTHO05D002892 6.0e-07 59.3 132 25.8
unitig_32.g11073 Utricularia gibba HOM05D001389 ORTHO05D002892 6.0e-07 59.3 159 25.2
unitig_748.g7853 Utricularia gibba HOM05D001389 ORTHO05D002892 6.0e-07 59.3 121 28.9
AL2G39910 Arabidopsis lyrata HOM05D001389 ORTHO05D002892 7.8e-07 58.9 153 28.8
AT1G79310 Arabidopsis thaliana HOM05D001389 ORTHO05D002892 7.8e-07 58.9 141 27.7
AT1G79330 Arabidopsis thaliana HOM05D001389 ORTHO05D002892 7.8e-07 58.9 125 28.0
BcaB02g08682 Brassica carinata HOM05D001389 ORTHO05D002892 7.8e-07 58.9 125 28.0
A07p44420 Brassica napus HOM05D001389 ORTHO05D002892 7.8e-07 58.9 124 28.2
C02p36520 Brassica napus HOM05D001389 ORTHO05D002892 7.8e-07 58.9 124 28.2
C06p53210 Brassica napus HOM05D001389 ORTHO05D002892 7.8e-07 58.9 125 28.0
BolC2t09651H Brassica oleracea HOM05D001389 ORTHO05D002892 7.8e-07 58.9 124 28.2
BolC6t40339H Brassica oleracea HOM05D001389 ORTHO05D002892 7.8e-07 58.9 125 28.0
BolC6t40341H Brassica oleracea HOM05D001389 ORTHO05D002892 7.8e-07 58.9 124 28.2
BraA07t31948Z Brassica rapa HOM05D001389 ORTHO05D002892 7.8e-07 58.9 124 30.6
Carub.0002s2617 Capsella rubella HOM05D001389 ORTHO05D002892 7.8e-07 58.9 141 27.7
MD10G1218100 Malus domestica HOM05D001389 ORTHO05D002892 7.8e-07 58.9 124 29.8
PSO210G2469 Papaver somniferum HOM05D001389 ORTHO05D002892 7.8e-07 58.9 132 26.5
Sp7g12170 Schrenkiella parvula HOM05D001389 ORTHO05D002892 7.8e-07 58.9 152 27.0
BcaB05g25193 Brassica carinata HOM05D001389 ORTHO05D002892 1.0e-06 58.5 124 27.4
A09p60910 Brassica napus HOM05D001323 ORTHO05D001223 1.0e-06 58.5 124 29.8
C06p53190 Brassica napus HOM05D001389 ORTHO05D002892 1.0e-06 58.5 124 30.6
BraA09t41464Z Brassica rapa HOM05D001323 ORTHO05D001223 1.0e-06 58.5 124 29.8
Cc07_g20600 Coffea canephora HOM05D001389 ORTHO05D002892 1.0e-06 58.5 124 29.8
Phvul.005G046100 Phaseolus vulgaris HOM05D001389 ORTHO05D002892 1.0e-06 58.5 126 27.8
SGA_v2.0_scaffold7G03632 Striga asiatica HOM05D001389 ORTHO05D002892 1.0e-06 58.5 132 25.8
THA.LOC104812396 Tarenaya hassleriana HOM05D001389 ORTHO05D002892 1.0e-06 58.5 121 29.8
BolC6t40337H Brassica oleracea HOM05D001389 ORTHO05D002892 1.3e-06 58.2 124 30.6
Carub.0002s2620 Capsella rubella HOM05D001389 ORTHO05D002892 1.3e-06 58.2 155 27.7
ECA248G2318 Erigeron canadensis HOM05D001389 ORTHO05D002892 1.3e-06 58.2 134 26.1
Lsat_1_v5_gn_1_86281 Lactuca sativa HOM05D001389 ORTHO05D002892 1.3e-06 58.2 124 28.2
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 1.3e-06 58.2 212 24.5
Nn7g38413 Nelumbo nucifera HOM05D001389 ORTHO05D002892 1.3e-06 58.2 132 27.3
Sc14g0000580 Simmondsia chinensis HOM05D001389 ORTHO05D002892 1.3e-06 58.2 140 27.1
Solyc09g098150.3 Solanum lycopersicum HOM05D001389 ORTHO05D002892 1.3e-06 58.2 132 26.5
Sopen09g036100 Solanum pennellii HOM05D001389 ORTHO05D002892 1.3e-06 58.2 132 26.5
AL1G28550 Arabidopsis lyrata HOM05D001389 ORTHO05D002892 1.7e-06 57.8 124 29.0
AT1G16420 Arabidopsis thaliana HOM05D001389 ORTHO05D002892 1.7e-06 57.8 124 29.8
BcaB02g08683 Brassica carinata HOM05D001389 ORTHO05D002892 1.7e-06 57.8 124 30.6
CANSAT56G0756 Cannabis sativa HOM05D001389 ORTHO05D002892 1.7e-06 57.8 124 28.2
Cfa017766 Carpinus fangiana HOM05D001389 ORTHO05D002892 1.7e-06 57.8 124 27.4
FAN25G2511 Fragaria x ananassa HOM05D001389 ORTHO05D002892 1.7e-06 57.8 155 26.5
AL2G39930 Arabidopsis lyrata HOM05D001389 ORTHO05D002892 2.3e-06 57.4 124 28.2
Ciclev10006644m.g Citrus clementina HOM05D001389 ORTHO05D002892 2.3e-06 57.4 155 27.7
DCAR_019907 Daucus carota HOM05D001389 ORTHO05D002892 2.3e-06 57.4 124 29.0
FAN16G0794 Fragaria x ananassa HOM05D001389 ORTHO05D002892 2.3e-06 57.4 124 27.4
Rhsim04G0003600 Rhododendron simsii HOM05D001389 ORTHO05D002892 2.3e-06 57.4 145 28.3
Sp5g34380 Schrenkiella parvula HOM05D001389 ORTHO05D002892 2.3e-06 57.4 149 26.2
Sc14g0000590 Simmondsia chinensis HOM05D001389 ORTHO05D002892 2.3e-06 57.4 140 27.1
TAR626G0305 Trochodendron aralioides HOM05D001389 ORTHO05D002892 2.3e-06 57.4 124 28.2
CiPaw.15G111800 Carya illinoinensis HOM05D001389 ORTHO05D002892 3.0e-06 57.0 124 27.4
Haze_18484 Corylus avellana HOM05D001389 ORTHO05D002892 3.0e-06 57.0 124 27.4
Thhalv10018629m.g Eutrema salsugineum HOM05D001389 ORTHO05D002892 3.0e-06 57.0 124 28.2
Thhalv10018721m.g Eutrema salsugineum HOM05D001389 ORTHO05D002892 3.0e-06 57.0 125 27.2
FvH4_3g13930 Fragaria vesca HOM05D001389 ORTHO05D002892 3.0e-06 57.0 124 27.4
FAN11G0792 Fragaria x ananassa HOM05D001389 ORTHO05D002892 3.0e-06 57.0 124 27.4
SGA_v2.0_scaffold186G40167 Striga asiatica HOM05D001389 ORTHO05D002892 3.0e-06 57.0 137 27.0
SGA_v2.0_scaffold26G11262 Striga asiatica HOM05D001389 ORTHO05D002892 3.0e-06 57.0 137 27.0
BraA07t31949Z Brassica rapa HOM05D001389 ORTHO05D002892 3.9e-06 56.6 125 27.2
Carub.0002s2618 Capsella rubella HOM05D001389 ORTHO05D002892 3.9e-06 56.6 125 27.2
CARHR073000 Cardamine hirsuta HOM05D001389 ORTHO05D002892 3.9e-06 56.6 124 27.4
Thhalv10018618m.g Eutrema salsugineum HOM05D001389 ORTHO05D002892 3.9e-06 56.6 124 28.2
Sed0007782 Sechium edule HOM05D001389 ORTHO05D002892 3.9e-06 56.6 124 28.2
PGSC0003DMG400011909 Solanum tuberosum HOM05D001389 ORTHO05D002892 3.9e-06 56.6 126 27.0
BraA07t30363Z Brassica rapa HOM05D001389 ORTHO05D002892 5.1e-06 56.2 130 30.0
Hma1.2p1_0754F.1_g213040 Hydrangea macrophylla HOM05D001389 ORTHO05D002892 5.1e-06 56.2 132 27.3
Sp5g34390 Schrenkiella parvula HOM05D001389 ORTHO05D002892 5.1e-06 56.2 124 28.2
Sp5g34400 Schrenkiella parvula HOM05D001389 ORTHO05D002892 5.1e-06 56.2 124 27.4
Ah.04g150320 Amaranthus hybridus HOM05D001389 ORTHO05D004821 6.6e-06 55.8 135 28.1
BcaB02g07210 Brassica carinata HOM05D001389 ORTHO05D002892 6.6e-06 55.8 130 29.2
Migut.H01652 Erythranthe guttata HOM05D001389 ORTHO05D002892 6.6e-06 55.8 125 29.6
Eucgr.F04472 Eucalyptus grandis HOM05D001389 ORTHO05D002892 6.6e-06 55.8 124 29.0
FAN21G0824 Fragaria x ananassa HOM05D001389 ORTHO05D002892 6.6e-06 55.8 124 26.6
RcHm_v2.0_Chr5g0023141 Rosa chinensis HOM05D001389 ORTHO05D002892 6.6e-06 55.8 124 27.4
MSTRG.7099 Avicennia marina HOM05D001389 ORTHO05D002892 8.7e-06 55.5 125 26.4
A07p27190 Brassica napus HOM05D001389 ORTHO05D002892 8.7e-06 55.5 130 30.0
MBI18_g37375_MAGBIO Magnolia biondii HOM05D001389 ORTHO05D002892 8.7e-06 55.5 124 29.0
Peaxi162Scf00286g00445 Petunia axillaris HOM05D001389 ORTHO05D002892 8.7e-06 55.5 124 28.2
Potri.008G081100 Populus trichocarpa HOM05D001389 ORTHO05D002892 8.7e-06 55.5 155 29.0
Sabra08G0060400 Salix brachista HOM05D001389 ORTHO05D002892 8.7e-06 55.5 155 29.0


User provided reference genes

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