Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 1.5e-253 879.0 450 100.0
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 5.9e-221 770.8 459 87.4
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 2.7e-218 761.9 458 83.4
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 1.4e-217 759.6 452 86.5
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 2.3e-217 758.8 452 86.3
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 2.6e-216 755.4 452 85.0
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 2.2e-215 752.3 417 87.3
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 2.8e-215 751.9 421 87.4
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 2.8e-215 751.9 457 85.6
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 1.2e-213 746.5 458 83.0
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 2.0e-213 745.7 419 86.2
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 1.4e-206 723.0 456 82.0
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 5.4e-198 694.5 422 80.1
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 1.3e-191 673.3 427 75.2
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 2.8e-191 672.2 454 76.2
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 2.4e-190 669.1 417 77.9
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 4.1e-190 668.3 423 76.8
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 2.0e-189 666.0 423 76.4
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 2.0e-189 666.0 420 77.4
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 2.7e-189 665.6 420 77.4
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 2.3e-188 662.5 419 78.3
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 3.8e-188 661.8 412 77.2
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 3.8e-188 661.8 426 76.3
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.3e-187 658.7 417 77.7
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 8.0e-186 654.1 417 77.2
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 1.4e-185 653.3 409 75.8
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.4e-185 653.3 417 77.2
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 2.3e-185 652.5 408 76.0
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 6.8e-185 651.0 417 77.0
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 8.9e-185 650.6 426 75.4
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 1.7e-183 646.4 413 76.8
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 1.9e-182 642.9 408 77.0
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 1.7e-180 636.3 426 73.2
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 6.6e-180 634.4 414 74.2
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 3.3e-179 632.1 407 74.7
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 3.3e-179 632.1 416 75.7
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 8.0e-178 627.5 413 73.4
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 6.4e-175 617.8 405 73.1
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 9.2e-174 614.0 417 70.0
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 2.7e-173 612.5 412 72.8
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 1.7e-172 609.8 417 71.2
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 1.7e-172 609.8 421 72.7
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 1.7e-172 609.8 421 72.7
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 2.5e-171 605.9 410 73.9
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 1.6e-170 603.2 401 72.6
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 8.1e-170 600.9 436 68.3
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 1.5e-168 596.7 418 69.1
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 1.7e-167 593.2 419 69.7
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 9.2e-166 587.4 458 63.8
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 3.0e-164 582.4 418 68.7
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 8.6e-164 580.9 415 68.0
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 6.8e-161 571.2 415 68.4
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 1.7e-159 566.6 411 66.4
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 2.9e-159 565.8 447 64.7
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 3.8e-159 565.5 420 65.0
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 1.4e-158 563.5 425 64.0
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 9.2e-158 560.8 405 67.9
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 6.0e-157 558.1 408 66.2
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 1.7e-156 556.6 405 67.4
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 5.1e-156 555.1 407 65.6
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 2.5e-155 552.7 408 65.4
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 2.5e-155 552.7 414 64.5
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 4.3e-155 552.0 413 65.1
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 7.3e-155 551.2 414 65.2
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 7.3e-155 551.2 412 65.3
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 7.3e-155 551.2 414 65.2
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 2.8e-154 549.3 425 64.5
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 4.7e-154 548.5 418 64.1
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 1.4e-153 547.0 404 66.1
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 6.9e-153 544.7 418 63.2
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 1.5e-152 543.5 365 72.1
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 4.4e-152 542.0 412 63.6
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 5.8e-152 541.6 415 63.1
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 7.6e-152 541.2 402 64.4
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 9.9e-152 540.8 421 63.4
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 1.3e-151 540.4 415 63.1
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 2.9e-151 539.3 423 63.6
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 6.4e-151 538.1 415 62.9
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 2.4e-150 536.2 414 65.0
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 9.3e-150 534.3 410 63.4
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 2.1e-149 533.1 403 64.8
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 4.6e-149 531.9 412 61.9
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 4.6e-149 531.9 331 76.7
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 2.3e-148 529.6 412 61.4
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 3.9e-148 528.9 462 56.9
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 2.8e-146 522.7 404 64.4
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 8.1e-146 521.2 440 59.8
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 5.3e-145 518.5 317 77.3
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 3.4e-144 515.8 447 58.2
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 1.4e-142 510.4 478 55.2
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 3.3e-139 499.2 392 63.3
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 2.6e-136 489.6 362 64.4
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 1.9e-134 483.4 331 68.0
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 4.6e-133 478.8 347 65.7
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 7.4e-131 471.5 347 64.6
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 2.1e-130 469.9 319 70.2
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 1.5e-128 463.8 404 55.4
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.7e-127 460.3 304 74.7
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 1.6e-125 453.8 425 53.4
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 1.2e-117 427.6 311 66.2
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 6.7e-116 421.8 362 57.5
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 4.2e-110 402.5 282 70.9
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 7.9e-109 398.3 348 55.2
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 1.3e-106 391.0 412 51.7
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 1.2e-101 374.4 278 66.2
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 1.2e-101 374.4 299 64.5
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 1.1e-97 361.3 363 49.9
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 3.8e-95 352.8 294 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 4.7e-93 345.9 382 48.2
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 6.1e-93 345.5 193 87.6
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 2.0e-91 340.5 335 56.4
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 2.8e-90 336.7 300 55.3
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 5.9e-88 328.9 303 54.8
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 1.3e-87 327.8 241 64.3
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 1.5e-83 314.3 326 51.5
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 6.6e-79 298.9 216 69.0
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 5.4e-73 279.3 260 52.7
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 8.6e-71 271.9 160 78.8
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.9e-70 270.8 266 51.5
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 2.5e-54 217.2 230 46.5
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 9.5e-54 215.3 161 62.1
Haze_10658 Corylus avellana HOM05D006166 ORTHO05D007663 1.5e-46 191.4 124 72.6
Haze_10680 Corylus avellana HOM05D006166 ORTHO05D007663 9.6e-46 188.7 131 67.2
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 2.1e-45 187.6 144 63.2
Haze_10661 Corylus avellana HOM05D006166 ORTHO05D007663 4.8e-37 159.8 191 49.7
Pp3s70_110 Physcomitrium patens HOM05D006166 ORTHO05D007663 1.8e-36 157.9 282 33.7
Dinv09041 Davidia involucrata HOM05D006166 ORTHO05D000293 3.4e-35 153.7 117 67.5
SHI16502 Sapria himalayana HOM05D006166 ORTHO05D007663 7.4e-22 109.4 198 35.9
CDE05G1058 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 3.4e-19 100.5 60 80.0
Haze_10677 Corylus avellana HOM05D006166 ORTHO05D007663 9.6e-14 82.4 77 55.8


User provided reference genes

Program Settings