Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1768.8 884 100.0
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 0.0e+00 1649.4 884 93.3
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1298.1 888 74.9
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 0.0e+00 1273.1 887 74.0
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 0.0e+00 1220.7 886 70.4
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 0.0e+00 1205.3 887 70.0
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1201.0 887 70.6
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1197.6 886 69.5
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 0.0e+00 1197.6 886 69.5
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 0.0e+00 1167.5 884 67.5
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 0.0e+00 1119.8 829 69.6
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 0.0e+00 1088.9 876 65.1
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.2e-288 995.7 935 58.1
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.2e-281 973.4 943 57.5
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 3.4e-257 892.1 887 54.5
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 5.9e-257 891.3 886 53.7
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.6e-254 881.7 890 55.2
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 1.5e-252 876.7 890 53.9
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 3.8e-248 862.1 889 52.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 1.2e-246 857.1 888 53.5
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 8.8e-245 850.9 894 53.2
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 1.5e-239 833.6 891 51.7
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 7.2e-239 831.2 891 51.3
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 9.4e-239 830.9 890 51.9
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 1.6e-238 830.1 892 51.5
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 2.1e-238 829.7 892 51.8
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.4e-237 827.0 895 51.4
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.0e-237 825.9 895 51.3
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 6.7e-237 824.7 892 51.5
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 1.5e-236 823.5 885 52.2
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.6e-236 822.8 915 50.5
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 7.5e-236 821.2 892 51.3
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 2.8e-235 819.3 875 51.7
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 3.7e-235 818.9 895 52.0
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 5.3e-234 815.1 894 51.2
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 2.5e-231 806.2 907 50.1
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 4.2e-231 805.4 891 50.7
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 6.8e-229 798.1 893 50.3
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 3.7e-227 792.3 893 50.2
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 9.1e-226 787.7 893 50.1
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 6.8e-221 771.5 908 49.4
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-220 770.4 894 49.6
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.4e-218 763.1 875 49.5
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 7.0e-218 761.5 892 47.9
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.7e-206 722.2 910 47.1
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.8e-205 720.3 911 46.9
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 4.0e-205 719.2 885 47.7
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 2.0e-204 716.8 910 46.3
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.1e-202 709.1 929 45.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 7.0e-202 708.4 881 47.4
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 6.0e-201 705.3 884 47.5
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.7e-200 703.7 875 48.3
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 3.3e-199 699.5 881 45.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 4.3e-199 699.1 886 44.8
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.2e-198 697.6 889 45.8
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.1e-198 696.8 888 46.2
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.1e-197 694.5 762 51.0
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.8e-197 693.7 904 44.9
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 4.0e-197 692.6 919 46.4
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 8.9e-197 691.4 889 44.7
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 5.8e-196 688.7 898 45.0
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 5.8e-196 688.7 883 45.9
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 7.5e-196 688.3 904 44.4
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 8.3e-195 684.9 884 45.5
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 1.1e-194 684.5 883 44.8
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 3.2e-194 682.9 883 45.6
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.6e-193 680.6 883 45.0
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.5e-193 679.5 902 44.3
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 6.0e-193 678.7 880 45.8
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 4.3e-191 672.5 896 46.5
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 4.3e-191 672.5 896 46.5
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 5.6e-191 672.2 891 45.7
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 9.5e-191 671.4 887 44.8
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 2.1e-190 670.2 892 44.3
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 2.8e-190 669.8 757 50.1
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 6.2e-190 668.7 888 44.9
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 8.1e-190 668.3 895 44.7
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 1.8e-189 667.2 878 44.9
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 3.1e-189 666.4 888 45.4
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 5.2e-189 665.6 885 44.6
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.2e-188 664.5 879 44.9
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 4.4e-188 662.5 890 44.0
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 2.2e-187 660.2 877 43.2
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 4.1e-186 656.0 889 43.0
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 4.1e-186 656.0 890 43.7
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 7.8e-185 651.7 777 48.3
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.7e-184 650.6 883 44.2
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 3.6e-182 642.9 868 44.2
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 1.5e-180 637.5 822 43.3
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 3.4e-180 636.3 874 44.4
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 4.4e-180 636.0 965 41.8
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 5.4e-178 629.0 872 44.0
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 2.3e-176 623.6 876 43.3
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 2.3e-176 623.6 876 43.3
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 3.0e-176 623.2 933 40.3
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.4e-173 613.6 897 41.9
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 2.2e-171 607.1 898 43.1
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.2e-171 607.1 689 50.8
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 6.4e-171 605.5 605 53.4
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 1.0e-168 598.2 840 43.2
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 3.0e-168 596.7 665 50.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.5e-162 575.9 886 41.6
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 1.2e-156 558.1 891 39.1
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.7e-155 554.3 792 43.1
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.2e-154 549.7 748 43.4
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 7.1e-154 548.9 569 54.7
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 3.5e-153 546.6 880 41.4
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.0e-147 528.5 718 43.0
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 6.1e-145 519.2 609 48.6
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.7e-144 515.8 591 49.7
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 5.9e-140 502.7 686 45.6
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 1.4e-136 491.5 710 42.7
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 3.3e-135 486.9 887 37.5
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 2.3e-128 464.2 633 43.9
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 3.9e-128 463.4 585 46.0
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.5e-114 417.5 347 63.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 1.6e-113 414.8 527 47.6
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 4.5e-108 396.7 552 44.7
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 3.7e-102 377.1 367 52.6
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.8e-101 374.8 567 39.5
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 6.0e-92 343.2 683 34.6
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 5.0e-91 340.1 252 69.0
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.5e-82 311.2 668 33.8
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 7.3e-82 309.7 515 38.4
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 4.7e-81 307.0 399 45.9
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 4.7e-81 307.0 301 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 1.3e-78 298.9 845 28.8
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 5.1e-75 287.0 1079 26.5
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 6.2e-73 280.0 689 27.9
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 6.4e-70 270.0 526 34.2
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 3.5e-68 264.2 487 37.4
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 2.3e-67 261.5 191 69.1
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.1e-67 260.4 253 56.9
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 2.4e-61 241.5 191 65.4
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 3.3e-58 231.1 164 72.6
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 1.4e-53 215.7 186 60.8
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 3.2e-53 214.5 164 68.3
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.6e-52 212.2 223 51.6
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.1e-50 206.1 153 71.2
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 3.3e-50 204.5 153 70.6
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 1.8e-48 198.7 174 58.0
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 6.9e-48 196.8 177 57.1
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 9.9e-47 193.0 162 59.9
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 1.3e-46 192.6 153 66.7
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 4.2e-45 187.6 302 38.4
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 5.5e-45 187.2 123 77.2
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 7.1e-45 186.8 123 77.2
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-41 175.3 179 53.1
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 2.0e-39 168.7 151 61.6
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 4.5e-39 167.5 170 56.5
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 2.5e-37 161.8 197 47.2
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 2.1e-36 158.7 467 28.9
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.0e-35 156.4 149 58.4
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 7.4e-34 150.2 123 61.0
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 2.4e-32 145.2 285 34.7
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.2e-31 142.9 118 66.9
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 1.2e-31 142.9 105 58.1
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 7.2e-29 133.7 114 53.5
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 2.7e-28 131.7 748 22.6
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 4.3e-26 124.4 98 64.3
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.7e-26 123.2 97 64.9
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.8e-25 121.7 95 56.8
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.6e-23 115.2 96 62.5
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.4e-23 114.8 261 31.0
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 2.1e-20 105.5 314 26.4
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.1e-18 99.8 318 24.5
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 2.0e-18 99.0 68 64.7
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 7.2e-13 80.5 216 31.5
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 9.4e-13 80.1 242 29.3
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 1.0e-11 76.6 68 61.8
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 3.0e-11 75.1 58 65.5
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.0e-10 72.4 85 48.2
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.7e-09 68.2 61 60.7
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.1e-08 66.6 87 47.1
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 1.1e-08 66.6 143 30.8
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.4e-08 65.5 49 61.2
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.1e-08 65.1 56 57.1
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 4.5e-07 61.2 160 30.0
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 5.0e-06 57.8 47 57.4


User provided reference genes

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