Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 2.1e-100 369.0 183 100.0
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 4.9e-65 251.5 180 72.2
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 2.0e-63 246.1 183 69.4
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 3.9e-62 241.9 175 72.0
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 5.0e-62 241.5 182 68.1
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 1.1e-59 233.8 179 66.5
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 3.4e-58 228.8 183 68.3
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 4.1e-56 221.9 165 72.1
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.0e-54 217.2 180 65.6
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.1e-53 213.8 169 63.9
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.5e-53 212.6 168 65.5
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 4.3e-53 211.8 139 69.8
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 4.3e-53 211.8 168 65.5
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.3e-53 211.8 185 62.2
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 7.3e-53 211.1 188 61.2
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.1e-52 209.5 163 66.9
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 8.1e-52 207.6 158 65.8
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 8.1e-52 207.6 165 64.2
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 1.8e-51 206.5 145 66.2
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 3.1e-51 205.7 134 68.7
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 6.8e-51 204.5 169 61.5
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 8.9e-51 204.1 164 64.0
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 1.2e-50 203.8 166 62.7
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 1.2e-50 203.8 138 69.6
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 1.5e-50 203.4 152 63.8
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 2.0e-50 203.0 139 69.1
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 2.0e-50 203.0 169 60.4
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 2.0e-50 203.0 176 61.9
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 2.6e-50 202.6 169 62.1
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 2.6e-50 202.6 169 61.5
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.4e-50 202.2 139 67.6
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 3.4e-50 202.2 140 68.6
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 4.4e-50 201.8 178 60.7
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 5.8e-50 201.4 132 72.0
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 7.6e-50 201.1 123 74.0
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.3e-49 200.3 166 61.4
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 1.3e-49 200.3 172 59.3
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 1.3e-49 200.3 172 59.3
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 1.3e-49 200.3 181 59.7
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 1.7e-49 199.9 156 63.5
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 2.2e-49 199.5 169 60.9
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 2.2e-49 199.5 178 60.1
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 2.9e-49 199.1 162 63.0
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 2.9e-49 199.1 182 60.4
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 2.9e-49 199.1 177 59.9
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 4.9e-49 198.4 185 57.3
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 4.9e-49 198.4 168 62.5
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 4.9e-49 198.4 178 59.0
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 6.4e-49 198.0 166 60.8
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 6.4e-49 198.0 166 62.0
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 6.4e-49 198.0 175 62.3
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 6.4e-49 198.0 172 60.5
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 1.4e-48 196.8 165 61.8
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 1.4e-48 196.8 165 61.8
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.4e-48 196.8 154 64.3
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 1.4e-48 196.8 166 60.2
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 1.9e-48 196.4 174 56.3
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 1.9e-48 196.4 177 59.3
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.4e-48 196.1 172 57.6
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 4.1e-48 195.3 179 56.4
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 4.1e-48 195.3 114 75.4
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 5.4e-48 194.9 176 56.8
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 5.4e-48 194.9 118 72.9
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 7.1e-48 194.5 186 55.4
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 7.1e-48 194.5 180 57.2
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 9.2e-48 194.1 181 56.9
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 9.2e-48 194.1 187 57.2
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 1.2e-47 193.7 176 59.1
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 1.2e-47 193.7 114 76.3
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 1.2e-47 193.7 178 56.2
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 2.1e-47 193.0 164 61.0
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 2.1e-47 193.0 165 61.2
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 6.0e-47 191.4 168 56.5
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 6.0e-47 191.4 169 62.1
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 7.8e-47 191.0 172 55.2
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 7.8e-47 191.0 182 56.6
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 7.8e-47 191.0 125 70.4
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 1.0e-46 190.7 193 56.5
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.3e-46 190.3 176 56.2
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.7e-46 189.9 180 57.8
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.7e-46 189.9 180 57.8
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.7e-46 189.9 164 60.4
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 3.0e-46 189.1 180 55.0
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 3.9e-46 188.7 161 60.2
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 8.7e-46 187.6 178 54.5
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 5.6e-45 184.9 140 61.4
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 9.6e-45 184.1 173 57.2
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 6.2e-44 181.4 173 55.5
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 8.1e-44 181.0 184 53.3
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 3.4e-42 175.6 170 50.6
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 5.8e-42 174.9 106 74.5
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 7.1e-40 167.9 110 71.8
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 1.2e-39 167.2 148 59.5
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 6.0e-39 164.9 101 70.3
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 8.7e-38 161.0 188 50.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.1e-36 156.4 97 71.1
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 4.0e-35 152.1 132 57.6
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 9.0e-35 151.0 121 57.9
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 4.5e-34 148.7 176 49.4
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 7.6e-34 147.9 151 52.3
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 1.7e-33 146.7 173 47.4
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 2.9e-33 146.0 138 52.9
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 6.4e-33 144.8 121 57.0
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 6.4e-33 144.8 135 54.1
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.1e-32 144.1 105 61.0
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 1.9e-32 143.3 176 49.4
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.4e-32 142.9 124 53.2
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 3.2e-32 142.5 109 57.8
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 5.4e-32 141.7 119 56.3
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 7.1e-32 141.4 166 45.8
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 9.3e-32 141.0 138 50.7
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.2e-31 140.6 105 61.0
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.6e-31 140.2 128 54.7
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 2.1e-31 139.8 105 60.0
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 2.1e-31 139.8 151 48.3
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.7e-31 139.4 121 53.7
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 2.7e-31 139.4 102 62.7
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 2.3e-30 136.3 153 48.4
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 2.3e-30 136.3 104 58.7
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 2.3e-30 136.3 105 59.0
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 3.0e-30 136.0 180 43.9
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 3.0e-30 136.0 167 44.3
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.0e-30 136.0 124 53.2
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 3.9e-30 135.6 105 58.1
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 1.5e-29 133.7 176 43.8
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.9e-29 133.3 155 45.8
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 1.9e-29 133.3 124 50.0
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.9e-29 133.3 124 50.0
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 1.9e-29 133.3 156 44.9
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 2.5e-29 132.9 102 57.8
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 5.6e-29 131.7 105 55.2
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 5.6e-29 131.7 167 41.3
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 7.4e-29 131.3 107 57.0
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 9.6e-29 131.0 103 57.3
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 9.6e-29 131.0 105 56.2
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 1.3e-28 130.6 133 50.4
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 1.6e-28 130.2 145 46.2
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.1e-27 127.5 105 49.5
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 1.4e-27 127.1 176 40.3
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.4e-27 127.1 166 44.0
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.8e-27 126.7 173 41.6
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 1.8e-27 126.7 105 54.3
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 4.0e-27 125.6 163 40.5
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 6.9e-27 124.8 94 61.7
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.5e-26 123.6 169 40.8
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 2.0e-26 123.2 102 53.9
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 4.5e-26 122.1 112 48.2
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 5.8e-26 121.7 64 81.2
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 9.9e-26 120.9 119 61.3
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 2.2e-25 119.8 130 46.2
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 4.9e-25 118.6 144 45.1
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 6.4e-25 118.2 165 40.0
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.4e-24 117.1 102 56.9
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.9e-24 116.7 65 78.5
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 2.4e-24 116.3 135 45.2
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 5.5e-24 115.2 97 53.6
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 2.1e-23 113.2 88 58.0
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 1.8e-22 110.2 169 38.5
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 2.3e-22 109.8 64 75.0
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 1.1e-21 107.5 62 74.2
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 8.2e-20 101.3 189 32.3
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 1.1e-19 100.9 185 38.9
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 1.4e-19 100.5 185 38.9
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 1.5e-18 97.1 166 38.6
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 7.6e-18 94.7 134 40.3
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 7.6e-18 94.7 98 52.0
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 2.9e-17 92.8 91 48.4
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 3.8e-17 92.4 212 28.8
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 4.2e-16 89.0 59 62.7
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 2.2e-12 76.6 75 49.3
AagrBONN_evm.TU.Sc2ySwM_368.3177 Anthoceros agrestis HOM05D003884 ORTHO05D004482 4.1e-11 72.4 95 38.9
Mapoly0021s0016 Marchantia polymorpha HOM05D003884 ORTHO05D004482 2.2e-09 66.6 94 33.0
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.5e-08 63.2 66 48.5
TPR.G39919 Trifolium pratense HOM05D003884 ORTHO05D004482 4.2e-08 62.4 78 55.1
Oeu001664.1 Olea europaea HOM05D003884 ORTHO05D004482 4.6e-07 58.9 78 42.3
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 1.4e-06 57.4 43 62.8
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 3.9e-06 55.8 47 55.3
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 3.9e-06 55.8 47 55.3


User provided reference genes

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