Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 0.0e+00 1095.5 538 100.0
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 1.4e-248 862.8 541 78.7
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 2.5e-234 815.5 541 74.9
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 6.1e-233 810.8 542 75.3
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 6.3e-230 800.8 599 69.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 3.9e-227 791.6 538 73.4
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 5.8e-215 751.1 540 70.0
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 1.1e-192 677.2 573 64.2
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 2.5e-173 612.8 573 60.0
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 2.5e-173 612.8 535 57.9
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 5.1e-171 605.1 407 74.0
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 8.7e-171 604.4 543 58.2
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 3.3e-170 602.4 558 56.5
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 6.7e-163 578.2 536 56.2
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.0e-155 554.3 532 53.6
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 1.0e-155 554.3 529 55.8
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 6.5e-150 535.0 542 53.7
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 9.4e-149 531.2 540 52.8
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 6.1e-148 528.5 533 52.2
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 1.0e-147 527.7 532 51.9
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 3.0e-147 526.2 535 53.5
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 2.8e-145 519.6 535 51.2
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.4e-144 517.3 534 51.3
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 9.1e-144 514.6 534 51.1
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 2.0e-143 513.5 525 50.3
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 2.9e-142 509.6 534 51.1
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 8.5e-142 508.1 534 50.0
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 7.2e-141 505.0 546 49.5
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 4.7e-140 502.3 538 47.6
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 6.1e-140 501.9 519 52.4
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 1.0e-139 501.1 496 52.2
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 1.4e-139 500.7 537 48.6
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 5.2e-139 498.8 594 47.0
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 1.4e-136 490.7 543 47.3
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 9.1e-136 488.0 539 48.8
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 2.5e-133 479.9 521 48.6
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 9.4e-133 478.0 539 46.9
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 2.7e-132 476.5 520 48.8
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.7e-132 476.5 474 52.1
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 2.3e-131 473.4 520 48.5
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 6.8e-131 471.9 574 45.3
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 7.5e-130 468.4 518 48.8
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 6.3e-129 465.3 533 47.3
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 1.4e-128 464.2 602 43.7
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 1.4e-128 464.2 470 51.3
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 1.8e-128 463.8 495 50.7
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 7.0e-128 461.8 527 48.2
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.2e-127 461.1 421 55.8
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 5.9e-127 458.8 419 54.7
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 6.5e-126 455.3 522 47.5
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.5e-126 455.3 489 49.9
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 9.4e-125 451.4 555 44.7
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 1.6e-124 450.7 547 45.0
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 2.8e-121 439.9 552 45.3
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 1.4e-120 437.6 469 48.0
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.8e-120 437.2 553 44.1
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.6e-119 434.1 550 44.9
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 2.7e-119 433.3 564 44.5
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 1.0e-118 431.4 694 37.2
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 1.7e-118 430.6 550 44.2
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 2.3e-118 430.3 389 56.8
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 6.6e-118 428.7 548 43.8
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.5e-117 427.6 549 43.7
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 2.5e-117 426.8 543 44.2
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 7.2e-117 425.2 549 43.7
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 6.1e-116 422.2 545 43.9
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 1.0e-115 421.4 546 44.3
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.4e-115 421.0 446 49.1
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 1.4e-115 421.0 433 51.3
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 4.0e-115 419.5 560 43.9
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 8.9e-115 418.3 541 44.4
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 9.2e-112 408.3 474 46.2
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.2e-111 407.9 539 42.5
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.6e-111 407.5 387 51.9
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 1.7e-110 404.1 487 47.4
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 5.6e-109 399.1 543 38.7
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 2.8e-108 396.7 534 45.1
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 1.4e-107 394.4 432 48.6
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 2.0e-106 390.6 424 47.4
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.0e-106 390.6 479 44.5
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 1.5e-101 374.4 343 53.4
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 7.3e-101 372.1 233 75.5
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 3.1e-99 366.7 385 50.6
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 3.4e-98 363.2 381 50.7
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 5.8e-98 362.5 423 46.1
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.2e-96 356.7 404 45.8
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.6e-95 352.8 387 49.6
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.7e-94 350.9 376 47.9
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 6.6e-94 349.0 426 44.8
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 4.3e-93 346.3 384 47.4
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 6.4e-89 332.4 437 44.6
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 1.5e-85 321.2 388 46.1
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 1.1e-80 305.1 283 56.2
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 4.6e-79 299.7 391 44.0
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.1e-75 288.5 226 64.6
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 2.0e-66 257.7 301 43.9
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 5.8e-66 256.1 278 48.6
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 3.5e-63 246.9 517 31.3
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 3.8e-57 226.9 341 39.0
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 4.9e-57 226.5 535 30.5
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 8.8e-38 162.5 152 55.3
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 6.1e-31 139.8 225 38.7
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.7e-28 131.7 264 32.2
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 2.8e-28 131.0 213 35.7
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 9.1e-27 125.9 386 26.4
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 2.6e-26 124.4 214 32.7
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.5e-26 123.6 120 54.2
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 1.0e-25 122.5 89 65.2
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 3.8e-25 120.6 111 54.1
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.8e-19 101.7 107 53.3
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 7.0e-19 99.8 175 35.4
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 2.1e-15 88.2 158 32.3
PGSC0003DMG401016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 1.2e-13 82.4 253 28.5
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.6e-07 62.0 94 35.1


User provided reference genes

Program Settings