Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.3e-180 636.3 345 100.0
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.1e-154 549.3 345 87.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 4.0e-153 545.0 345 85.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.4e-152 542.0 345 84.1
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 3.8e-151 538.5 345 84.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.0e-148 530.4 345 84.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.6e-146 523.1 345 80.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.1e-146 522.7 345 84.3
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 2.4e-145 519.2 345 79.7
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 5.3e-145 518.1 344 80.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.2e-144 516.9 345 78.8
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.6e-144 515.8 345 78.0
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 5.8e-144 514.6 345 79.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.3e-143 513.5 345 79.4
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 4.9e-143 511.5 335 80.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.1e-142 510.4 345 77.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.9e-142 509.6 345 80.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.2e-142 508.8 335 79.4
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.6e-141 506.5 337 77.7
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 3.5e-141 505.4 345 78.3
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 3.5e-141 505.4 345 79.7
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.0e-141 504.6 345 76.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 7.9e-141 504.2 345 75.9
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 7.9e-141 504.2 345 76.8
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.0e-140 503.8 345 79.4
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.8e-140 503.1 345 78.0
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.8e-140 503.1 345 77.4
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.3e-140 502.7 346 77.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 3.9e-140 501.9 335 79.7
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.8e-138 495.7 345 75.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 4.8e-138 495.0 345 75.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.4e-137 492.7 345 76.2
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.4e-137 492.7 345 77.7
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.0e-137 491.9 345 74.8
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 5.3e-137 491.5 345 76.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.3e-137 491.5 345 76.2
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 9.0e-137 490.7 342 77.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.4e-136 488.8 345 74.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.5e-136 488.4 345 75.7
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.5e-136 488.4 345 74.8
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 5.8e-136 488.0 345 75.7
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.6e-136 487.6 345 75.7
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.4e-134 483.4 347 74.1
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.5e-134 481.5 341 76.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.6e-133 479.9 345 73.3
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-133 479.9 341 75.1
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 3.5e-133 478.8 370 71.1
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 7.9e-133 477.6 345 74.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.9e-131 473.0 340 75.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.5e-131 472.6 319 79.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.7e-131 471.5 345 71.6
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.1e-130 469.5 345 71.3
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.7e-130 468.8 345 71.0
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.0e-128 463.0 335 76.7
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.2e-126 455.7 345 69.9
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.1e-125 453.0 345 70.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.1e-125 453.0 345 69.6
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.7e-125 452.6 345 70.7
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.6e-125 451.8 315 74.3
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.9e-124 448.7 345 71.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 5.1e-124 448.4 327 75.8
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.7e-122 442.2 341 70.1
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.4e-121 440.3 345 67.5
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.4e-121 439.5 345 72.2
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 9.1e-121 437.6 341 69.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 2.6e-120 436.0 345 67.0
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 8.5e-119 431.0 345 67.8
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.9e-118 429.9 345 66.4
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.5e-118 429.5 289 75.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.5e-118 429.5 345 68.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 3.2e-118 429.1 319 72.1
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-117 427.2 345 67.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.6e-117 426.8 345 70.7
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 7.9e-117 424.5 289 78.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.8e-116 423.3 345 67.2
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 6.7e-116 421.4 394 60.7
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 3.3e-115 419.1 346 67.3
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 5.3e-113 411.8 339 67.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-112 410.2 345 68.1
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.4e-112 409.1 345 65.2
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.7e-111 406.8 341 63.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.8e-111 405.6 345 65.2
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.5e-110 401.7 345 64.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.0e-108 397.5 337 65.0
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.4e-108 397.1 346 65.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.3e-108 396.4 345 63.8
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 7.4e-107 391.3 288 75.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 9.7e-107 391.0 345 65.8
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.2e-106 389.8 345 62.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.7e-106 389.0 344 62.2
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 8.2e-106 387.9 345 62.9
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.8e-105 386.7 345 62.6
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 62.9
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 62.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 9.1e-105 384.4 346 64.7
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-103 380.9 287 69.7
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.2e-102 375.6 338 61.8
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 5.2e-100 368.6 345 61.7
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.7e-100 368.2 261 72.8
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.8e-100 367.9 343 60.9
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 1.2e-99 367.5 373 57.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.5e-99 367.1 333 61.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.8e-98 362.1 345 58.8
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 4.8e-98 362.1 345 61.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.4e-97 359.8 367 56.9
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 4.1e-97 359.0 315 64.8
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.0e-96 356.7 348 58.3
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.0e-95 354.4 348 60.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.9e-95 352.8 321 61.4
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 8.5e-95 351.3 345 58.3
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.5e-94 349.7 350 58.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.2e-94 349.0 350 58.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 6.1e-93 345.1 348 57.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-87 327.4 347 57.9
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-87 327.0 323 59.1
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.9e-87 326.2 329 56.5
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 6.5e-87 325.1 333 58.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.5e-86 323.9 348 56.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-86 323.9 346 56.6
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.5e-86 323.9 346 56.6
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.6e-85 320.5 346 56.1
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.8e-85 319.7 345 56.8
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 4.7e-85 318.9 346 55.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 4.7e-85 318.9 345 54.5
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 6.1e-85 318.5 340 57.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-84 316.2 346 55.5
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.7e-82 310.5 317 59.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.9e-82 308.9 340 50.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 6.6e-79 298.5 334 51.8
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.9e-78 297.0 346 53.2
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-78 296.2 346 53.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.1e-77 293.5 344 53.5
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.8e-77 293.1 303 59.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.0e-76 291.2 341 53.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.8e-76 290.4 343 52.5
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 5.2e-76 288.9 341 53.4
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 3.7e-74 282.7 343 52.2
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 8.3e-74 281.6 341 52.8
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.5e-72 276.2 345 47.0
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 5.9e-72 275.4 263 58.9
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 3.3e-70 269.6 285 57.5
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.6e-69 266.2 337 47.8
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.8e-68 263.8 284 56.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-67 260.8 303 53.8
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-67 260.4 206 68.9
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 4.4e-67 259.2 296 54.4
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.0e-63 246.5 289 50.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 5.6e-62 242.3 339 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 5.6e-62 242.3 342 40.9
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 7.3e-62 241.9 356 46.6
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.8e-61 240.0 290 51.0
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 7.5e-59 231.9 350 45.4
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.6e-56 224.2 343 42.9
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 6.6e-55 218.8 296 44.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.9e-54 217.2 138 86.2
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.9e-50 203.4 239 51.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.1e-49 201.4 185 59.5
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.1e-49 201.4 343 35.9
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.8e-45 186.8 254 47.2
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 4.0e-44 183.0 143 70.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.3e-39 167.9 304 43.1
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 6.6e-39 165.6 158 62.0
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 6.6e-39 165.6 176 55.1
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.4e-33 147.9 321 38.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 4.2e-33 146.4 284 40.1
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 2.2e-26 124.0 292 36.6
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 2.7e-24 117.1 172 46.5
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.0e-23 115.2 284 34.9
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.0e-23 115.2 284 34.9
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 4.5e-19 99.8 127 55.1
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 7.9e-16 89.0 55 85.5
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 3.0e-15 87.0 104 56.7
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 5.1e-15 86.3 54 85.2
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.1e-12 77.0 292 29.8
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.4e-09 68.2 132 43.9
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 5.5e-09 66.2 125 42.4
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 9.7e-06 55.5 125 39.2


User provided reference genes

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