Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 8.1e-177 623.6 315 100.0
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.5e-143 513.1 282 92.6
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 7.7e-143 510.8 282 91.1
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 3.8e-142 508.4 282 90.1
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 5.0e-142 508.1 281 90.4
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 4.2e-141 505.0 282 89.0
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 9.4e-141 503.8 313 81.5
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.0e-139 500.4 282 88.7
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 1.8e-139 499.6 282 88.3
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 2.0e-138 496.1 282 86.9
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 3.3e-138 495.4 282 88.3
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 7.4e-138 494.2 282 89.4
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.4e-136 490.0 282 85.1
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 3.1e-136 488.8 282 84.4
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 1.6e-135 486.5 282 84.0
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 3.5e-135 485.3 280 82.9
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 3.5e-135 485.3 282 83.7
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 4.5e-135 485.0 280 83.6
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 4.5e-135 485.0 282 83.7
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 4.5e-135 485.0 282 83.3
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 4.5e-135 485.0 282 83.3
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 4.5e-135 485.0 282 85.1
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.0e-134 483.8 282 82.6
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.7e-134 483.0 282 82.6
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.5e-133 479.9 282 82.3
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.9e-133 479.6 282 81.6
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.9e-133 479.6 282 82.6
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 5.5e-133 478.0 282 83.0
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 9.4e-133 477.2 282 82.3
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 2.1e-132 476.1 282 81.2
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 2.7e-132 475.7 341 73.6
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 4.7e-132 474.9 282 81.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.7e-132 474.9 282 81.2
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 8.0e-132 474.2 282 81.2
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.0e-131 473.8 282 80.9
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.8e-131 473.0 282 80.9
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.3e-131 472.6 282 81.2
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 2.3e-131 472.6 282 80.1
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 3.0e-131 472.2 282 80.5
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 3.3e-130 468.8 282 84.0
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 7.5e-130 467.6 293 78.5
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 9.7e-130 467.2 282 81.6
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.3e-129 466.8 282 78.4
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.1e-128 463.8 282 79.4
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.8e-128 463.0 282 80.1
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 3.1e-128 462.2 282 79.1
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 5.3e-128 461.5 282 79.8
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.0e-128 461.1 282 78.4
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.0e-128 461.1 282 80.5
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 2.0e-127 459.5 282 78.7
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 4.5e-127 458.4 282 78.0
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.9e-127 458.0 284 78.2
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 5.9e-127 458.0 282 77.7
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 7.7e-127 457.6 282 77.3
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.1e-125 453.8 282 76.6
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 2.5e-125 452.6 269 79.9
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 2.5e-125 452.6 282 75.2
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.2e-125 451.8 282 77.7
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 7.2e-125 451.1 282 76.6
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 9.4e-125 450.7 277 78.7
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 2.1e-124 449.5 282 75.2
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 6.1e-124 448.0 282 77.3
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.8e-123 446.4 283 78.4
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 2.3e-123 446.0 281 77.6
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 3.0e-123 445.7 282 77.0
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.2e-122 443.7 282 80.9
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 3.4e-122 442.2 282 76.2
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 4.4e-122 441.8 282 74.8
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 4.4e-122 441.8 266 81.2
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.7e-122 441.4 288 75.7
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 9.8e-122 440.7 283 77.0
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 9.8e-122 440.7 286 74.8
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.8e-121 438.3 283 75.6
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 8.3e-121 437.6 283 76.3
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 1.4e-120 436.8 278 75.5
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 7.0e-120 434.5 283 76.7
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 7.0e-120 434.5 282 74.5
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 9.1e-120 434.1 285 77.2
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 9.1e-120 434.1 283 75.3
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.2e-119 433.7 283 76.3
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.6e-119 433.3 283 75.6
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.0e-119 433.0 282 73.8
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.7e-119 432.6 283 76.0
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 7.7e-119 431.0 282 74.5
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.3e-118 430.3 317 67.2
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 3.8e-118 428.7 282 75.2
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 3.8e-118 428.7 286 75.5
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 3.8e-118 428.7 290 71.4
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 5.0e-118 428.3 266 75.2
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 6.5e-118 427.9 282 75.5
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 8.6e-118 427.6 286 74.5
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 8.6e-118 427.6 282 73.8
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.5e-117 426.8 281 75.1
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.2e-117 425.6 286 74.8
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 4.2e-117 425.2 325 66.8
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 4.2e-117 425.2 286 72.0
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 5.5e-117 424.9 266 79.3
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 8.0e-116 421.0 282 74.8
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.8e-115 419.9 286 73.4
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 2.3e-115 419.5 286 73.8
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.3e-115 419.5 286 72.7
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 4.0e-115 418.7 286 73.8
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 4.0e-115 418.7 266 74.8
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 5.2e-115 418.3 286 73.4
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 6.8e-115 417.9 286 73.1
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 6.8e-115 417.9 313 67.1
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 8.8e-115 417.5 286 73.4
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.5e-114 416.8 279 73.8
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.5e-114 416.8 286 72.4
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 3.4e-114 415.6 295 71.5
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 5.7e-114 414.8 240 82.9
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 7.5e-114 414.5 286 73.1
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.7e-113 412.1 282 73.4
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.1e-112 410.6 267 73.8
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 7.0e-112 407.9 272 75.4
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 7.0e-112 407.9 286 69.6
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.2e-111 407.1 266 72.9
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.6e-111 406.8 282 74.1
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.6e-111 406.8 282 74.1
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 2.0e-111 406.4 276 73.6
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 2.7e-111 406.0 282 73.4
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.5e-111 405.2 283 71.0
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.9e-110 402.5 282 68.1
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 2.9e-110 402.5 282 68.1
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.2e-106 390.6 272 73.2
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.2e-106 390.6 281 67.6
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 6.4e-105 384.8 250 76.0
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 1.4e-104 383.6 341 63.3
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 2.4e-104 382.9 247 74.1
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.2e-104 382.5 287 67.2
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.4e-104 381.7 306 63.7
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 3.5e-103 379.0 282 69.9
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 7.8e-103 377.9 276 70.7
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.6e-100 370.2 213 82.2
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.8e-99 366.7 283 62.5
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.8e-99 366.7 231 75.3
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 6.8e-99 364.8 283 66.1
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.7e-97 359.0 266 65.8
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-95 354.0 258 71.3
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 2.0e-95 353.2 223 76.2
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 3.0e-94 349.4 213 77.0
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.6e-93 345.1 279 61.6
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 6.4e-89 331.6 267 61.8
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.3e-86 323.9 249 68.3
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 2.2e-81 306.6 283 58.0
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 3.5e-79 299.3 281 59.4
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 3.8e-73 279.3 213 60.1
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 5.4e-72 275.4 239 58.6
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.2e-52 208.4 282 47.9
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 6.9e-51 205.3 173 59.0
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.5e-50 204.1 173 57.2
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-49 201.1 328 41.8
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.7e-49 200.7 210 57.6
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 6.5e-49 198.7 172 59.3
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.9e-45 187.2 120 68.3
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 2.2e-44 183.7 269 43.1
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.9e-40 170.6 122 68.9
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.1e-39 167.2 180 51.7
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.8e-28 129.4 304 34.9
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 6.3e-28 129.0 280 36.8
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 3.4e-26 123.2 220 34.1
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.3e-25 121.3 85 62.4
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.6e-21 107.1 164 40.2
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.4e-21 106.3 120 45.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 9.7e-21 105.1 190 35.8
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.2e-20 104.0 66 78.8
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.4e-19 100.5 94 52.1
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.0e-15 85.5 52 80.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.8e-12 76.3 209 32.1
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 8.0e-07 58.9 62 48.4


User provided reference genes

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