Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 1.2e-25 119.0 59 100.0
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 4.1e-13 77.4 41 90.2
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.2e-10 67.4 41 70.7
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 2.1e-09 65.1 41 70.7
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-09 64.7 41 68.3
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.7e-09 64.7 41 68.3
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.7e-09 64.7 39 71.8
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.6e-09 64.3 41 68.3
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 4.7e-09 63.9 41 68.3
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 6.1e-09 63.5 39 71.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 6.1e-09 63.5 41 68.3
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 7.9e-09 63.2 41 65.9
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 1.0e-08 62.8 47 66.0
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 1.4e-08 62.4 38 65.8
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 1.4e-08 62.4 41 68.3
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.4e-08 62.4 41 73.2
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 2.3e-08 61.6 42 61.9
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 2.3e-08 61.6 41 63.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.3e-08 61.6 41 63.4
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.0e-08 61.2 42 59.5
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 3.0e-08 61.2 38 65.8
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 3.0e-08 61.2 41 68.3
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 3.0e-08 61.2 41 68.3
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.1e-08 60.5 42 59.5
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 5.1e-08 60.5 42 61.9
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 5.1e-08 60.5 42 61.9
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 5.1e-08 60.5 39 71.8
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.1e-08 60.5 38 68.4
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 5.1e-08 60.5 37 70.3
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 5.1e-08 60.5 41 63.4
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 5.1e-08 60.5 41 63.4
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 8.8e-08 59.7 42 64.3
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 8.8e-08 59.7 41 65.9
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 8.8e-08 59.7 41 68.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.1e-07 59.3 41 63.4
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 1.1e-07 59.3 37 67.6
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.1e-07 59.3 41 65.9
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.5e-07 58.9 42 61.9
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.5e-07 58.9 42 59.5
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 2.0e-07 58.5 41 63.4
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 2.0e-07 58.5 38 63.2
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 2.0e-07 58.5 41 63.4
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 2.0e-07 58.5 46 58.7
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.0e-07 58.5 42 59.5
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 2.0e-07 58.5 41 61.0
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.0e-07 58.5 39 64.1
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 2.6e-07 58.2 41 63.4
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.6e-07 58.2 42 59.5
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.6e-07 58.2 41 63.4
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.3e-07 57.8 37 67.6
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.3e-07 57.8 37 67.6
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.3e-07 57.8 37 67.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 3.3e-07 57.8 43 58.1
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 3.3e-07 57.8 42 57.1
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 4.4e-07 57.4 42 59.5
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 4.4e-07 57.4 42 59.5
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.4e-07 57.4 39 64.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 4.4e-07 57.4 37 67.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 5.7e-07 57.0 43 53.5
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 5.7e-07 57.0 39 64.1
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 5.7e-07 57.0 41 61.0
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 5.7e-07 57.0 38 63.2
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.7e-07 57.0 39 61.5
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 5.7e-07 57.0 41 61.0
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 7.4e-07 56.6 42 59.5
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 9.7e-07 56.2 46 58.7
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 9.7e-07 56.2 48 54.2
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 9.7e-07 56.2 41 58.5
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 9.7e-07 56.2 37 64.9
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 9.7e-07 56.2 37 64.9
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.3e-06 55.8 42 59.5
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 1.3e-06 55.8 42 59.5
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.3e-06 55.8 39 61.5
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.3e-06 55.8 39 61.5
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 1.7e-06 55.5 46 56.5
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.7e-06 55.5 36 66.7
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.7e-06 55.5 39 59.0
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.7e-06 55.5 39 59.0
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.7e-06 55.5 41 61.0
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.2e-06 55.1 38 60.5
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 2.2e-06 55.1 39 61.5
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 2.2e-06 55.1 39 61.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 2.2e-06 55.1 55 50.9
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.2e-06 55.1 42 54.8
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 2.8e-06 54.7 38 57.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.8e-06 54.7 38 57.9
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.8e-06 54.7 38 57.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.8e-06 54.7 38 57.9
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 2.8e-06 54.7 37 67.6
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 2.8e-06 54.7 38 60.5
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 2.8e-06 54.7 39 61.5
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.8e-06 54.7 39 61.5
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 2.8e-06 54.7 41 58.5
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 3.7e-06 54.3 41 56.1
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 4.8e-06 53.9 45 60.0
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 4.8e-06 53.9 45 60.0
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 4.8e-06 53.9 42 54.8
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 4.8e-06 53.9 41 58.5
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 6.3e-06 53.5 41 56.1
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 6.3e-06 53.5 39 59.0
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 6.3e-06 53.5 42 52.4
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 8.2e-06 53.1 35 62.9
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 8.2e-06 53.1 39 59.0
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 8.2e-06 53.1 39 59.0
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 8.2e-06 53.1 41 58.5


User provided reference genes

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