Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 3.2e-98 361.7 175 100.0
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 2.6e-71 272.3 171 73.1
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.6e-71 272.3 174 74.7
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 4.8e-70 268.1 174 71.8
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 4.8e-70 268.1 174 74.7
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 6.3e-70 267.7 171 71.3
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 8.2e-70 267.3 174 69.5
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 5.3e-69 264.6 174 71.8
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 1.2e-68 263.5 171 73.1
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 2.0e-68 262.7 174 70.1
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 3.5e-68 261.9 171 72.5
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 1.3e-67 260.0 175 70.9
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 1.3e-67 260.0 170 70.6
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 1.7e-67 259.6 174 70.1
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 1.7e-67 259.6 174 68.4
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 2.9e-67 258.8 158 74.1
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 8.5e-67 257.3 174 68.4
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 8.5e-67 257.3 171 70.8
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 1.5e-66 256.5 174 69.5
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 1.5e-66 256.5 174 67.8
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 4.2e-66 255.0 159 71.7
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 5.5e-66 254.6 174 66.7
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 1.6e-65 253.1 169 68.6
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 2.1e-65 252.7 188 65.4
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 2.7e-65 252.3 159 70.4
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 3.6e-65 251.9 158 73.4
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 8.0e-65 250.8 176 66.5
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.4e-64 250.0 174 66.1
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 3.0e-64 248.8 173 67.6
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 3.9e-64 248.4 171 66.7
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 3.9e-64 248.4 171 66.7
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 3.9e-64 248.4 174 63.8
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 8.8e-64 247.3 176 66.5
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 2.0e-63 246.1 174 64.9
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 2.6e-63 245.7 174 65.5
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 2.6e-63 245.7 171 67.3
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 5.7e-63 244.6 171 66.7
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 7.4e-63 244.2 158 68.4
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 7.4e-63 244.2 158 69.0
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 1.7e-62 243.0 174 65.5
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 2.2e-62 242.7 159 69.8
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 2.8e-62 242.3 158 68.4
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 2.8e-62 242.3 158 72.2
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 3.7e-62 241.9 172 65.7
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 3.7e-62 241.9 178 67.4
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 6.3e-62 241.1 175 65.7
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 6.3e-62 241.1 171 65.5
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 8.2e-62 240.7 171 66.1
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 1.1e-61 240.4 159 70.4
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.4e-61 240.0 178 66.9
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 1.4e-61 240.0 173 67.1
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 1.8e-61 239.6 171 65.5
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 1.8e-61 239.6 174 65.5
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 1.8e-61 239.6 171 65.5
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 2.4e-61 239.2 158 69.6
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 2.4e-61 239.2 171 65.5
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 5.3e-61 238.0 158 70.3
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 5.3e-61 238.0 178 67.4
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 7.0e-61 237.7 171 63.2
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 9.1e-61 237.3 173 64.7
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 1.6e-60 236.5 165 65.5
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 2.0e-60 236.1 172 64.5
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 2.0e-60 236.1 172 64.5
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 3.5e-60 235.3 172 64.5
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 2.2e-59 232.6 169 66.9
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 2.9e-59 232.3 157 66.9
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.9e-59 232.3 172 64.0
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 3.8e-59 231.9 160 64.4
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 5.0e-59 231.5 161 67.7
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 6.5e-59 231.1 168 64.3
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 1.9e-58 229.6 158 69.0
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 3.2e-58 228.8 159 69.2
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 4.2e-58 228.4 164 65.9
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 1.2e-57 226.9 172 64.0
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 1.2e-57 226.9 172 64.0
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 1.2e-57 226.9 172 64.0
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.6e-57 226.5 172 64.0
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 2.7e-57 225.7 170 62.4
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 4.7e-57 224.9 167 63.5
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 8.0e-57 224.2 172 62.8
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 2.3e-56 222.6 157 65.6
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 3.0e-56 222.2 171 62.0
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 4.0e-56 221.9 170 61.2
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 4.0e-56 221.9 163 64.4
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 6.8e-56 221.1 171 61.4
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.1e-53 213.8 174 54.6
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 4.1e-53 211.8 141 68.8
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 1.1e-50 203.8 161 61.5
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 1.9e-50 203.0 142 63.4
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 7.2e-50 201.1 147 67.3
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 1.8e-48 196.4 158 59.5
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 3.4e-47 192.2 158 56.3
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 8.0e-41 171.0 134 55.2
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 4.4e-39 165.2 141 58.2
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 3.2e-37 159.1 143 47.6
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 9.2e-37 157.5 150 49.3
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 1.1e-34 150.6 187 43.3
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.5e-34 150.2 162 46.3
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 3.1e-32 142.5 173 42.8
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 7.8e-28 127.9 82 72.0
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 3.6e-25 119.0 95 56.8
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 8.1e-25 117.9 145 39.3
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.3e-22 110.5 104 51.9
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 1.1e-18 97.4 52 76.9
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 2.8e-17 92.8 148 36.5
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 3.4e-15 85.9 54 74.1
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 1.7e-11 73.6 44 72.7
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 2.2e-06 56.6 71 40.8


User provided reference genes

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