Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C891G12 Lonicera japonica HOM05D000091 ORTHO05D018275 2.5e-38 162.2 117 100.0
Dinv13190 Davidia involucrata HOM05D000091 ORTHO05D018275 9.2e-25 117.1 117 76.9
Dinv21907 Davidia involucrata HOM05D000091 ORTHO05D009480 1.1e-22 110.2 117 72.6
Hma1.2p1_0308F.1_g120200 Hydrangea macrophylla HOM05D000091 ORTHO05D009480 1.2e-19 100.1 117 70.1
Potri.007G093000 Populus trichocarpa HOM05D000091 ORTHO05D009480 1.2e-16 90.1 117 59.8
TAR381G0295 Trochodendron aralioides HOM05D000091 ORTHO05D009480 5.1e-15 84.7 117 63.2
Duzib264G1100 Durio zibethinus HOM05D000091 ORTHO05D009480 1.9e-14 82.8 117 60.7
Actinidia28863 Actinidia chinensis HOM05D000091 ORTHO05D009480 2.5e-14 82.4 115 42.6
Sabra07G0077100 Salix brachista HOM05D000091 ORTHO05D009480 2.5e-14 82.4 117 57.3
DCAR_010086 Daucus carota HOM05D000091 ORTHO05D009480 3.6e-13 78.6 117 54.7
Migut.H02359 Erythranthe guttata HOM05D000091 ORTHO05D009480 8.1e-13 77.4 117 41.9
TWI74G1043 Tripterygium wilfordii HOM05D000091 ORTHO05D009480 1.8e-12 76.3 117 59.0
Peaxi162Scf00295g01020 Petunia axillaris HOM05D000091 ORTHO05D009480 2.3e-12 75.9 117 62.4
Thecc.01G101300 Theobroma cacao HOM05D000091 ORTHO05D009480 2.3e-12 75.9 117 63.2
Oeu056608.1 Olea europaea HOM05D000091 ORTHO05D009480 5.2e-12 74.7 117 60.7
Rhsim08G0010600 Rhododendron simsii HOM05D000091 ORTHO05D009480 5.2e-12 74.7 117 59.0
Potri.005G075400 Populus trichocarpa HOM05D000091 ORTHO05D009480 8.9e-12 73.9 117 59.0
Manes.12G134700 Manihot esculenta HOM05D000091 ORTHO05D009480 2.0e-11 72.8 117 61.5
Atru.chr4.62 Acer truncatum HOM05D000091 ORTHO05D009480 7.5e-11 70.9 117 59.0
Duzib147G1469 Durio zibethinus HOM05D000091 ORTHO05D009480 9.9e-11 70.5 117 58.1
CSS0047599 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D009480 1.7e-10 69.7 117 58.1
Nn2g14514 Nelumbo nucifera HOM05D000091 ORTHO05D018275 1.7e-10 69.7 117 56.4
Nitab4.5_0006967g0060 Nicotiana tabacum HOM05D000091 ORTHO05D009480 1.7e-10 69.7 118 62.7
Gohir.D03G037300 Gossypium hirsutum HOM05D000091 ORTHO05D009480 4.9e-10 68.2 117 57.3
COL.COLO4_09966 Corchorus olitorius HOM05D000091 ORTHO05D009480 6.4e-10 67.8 119 56.3
Gohir.A02G143200 Gossypium hirsutum HOM05D000091 ORTHO05D009480 6.4e-10 67.8 117 57.3
CAN.G151.29 Capsicum annuum HOM05D000091 ORTHO05D009480 8.3e-10 67.4 117 61.5
Sc16g0005020 Simmondsia chinensis HOM05D000091 ORTHO05D018275 1.4e-09 66.6 53 56.6
PGSC0003DMG400007239 Solanum tuberosum HOM05D000091 ORTHO05D009480 1.9e-09 66.2 117 59.8
ClCG10G008990 Citrullus lanatus HOM05D000091 ORTHO05D009480 2.4e-09 65.9 117 56.4
Sopen05g030030 Solanum pennellii HOM05D000091 ORTHO05D009480 2.4e-09 65.9 117 59.8
Nitab4.5_0000715g0010 Nicotiana tabacum HOM05D000091 ORTHO05D009480 3.2e-09 65.5 117 57.3
Prupe.6G187200 Prunus persica HOM05D000091 ORTHO05D009480 4.1e-09 65.1 53 58.5
Solyc05g051580.3 Solanum lycopersicum HOM05D000091 ORTHO05D009480 5.4e-09 64.7 117 59.0
Actinidia28232 Actinidia chinensis HOM05D000091 ORTHO05D009480 7.1e-09 64.3 117 56.4
Nitab4.5_0012380g0010 Nicotiana tabacum HOM05D000091 ORTHO05D009480 9.2e-09 63.9 117 57.3
Ciclev10025174m.g Citrus clementina HOM05D000091 ORTHO05D009480 1.6e-08 63.2 115 53.9
Sc20g0005860 Simmondsia chinensis HOM05D000091 ORTHO05D018275 2.7e-08 62.4 89 66.3
Nitab4.5_0000104g0010 Nicotiana tabacum HOM05D000091 ORTHO05D009480 3.5e-08 62.0 117 59.0
MSTRG.23343 Avicennia marina HOM05D000091 ORTHO05D009480 1.7e-07 59.7 53 58.5
Haze_24930 Corylus avellana HOM05D000091 ORTHO05D009480 1.7e-07 59.7 108 36.1
CsaV3_4G008870 Cucumis sativus L. HOM05D000091 ORTHO05D009480 1.7e-07 59.7 117 56.4
Cfa002660 Carpinus fangiana HOM05D000091 ORTHO05D009480 3.0e-07 58.9 117 36.8
FAN23G1696 Fragaria x ananassa HOM05D000091 ORTHO05D009480 6.6e-07 57.8 50 56.0
ECA246G2555 Erigeron canadensis HOM05D000091 ORTHO05D009480 8.6e-07 57.4 117 32.5
FAN28G1202 Fragaria x ananassa HOM05D000091 ORTHO05D009480 1.1e-06 57.0 47 59.6
RcHm_v2.0_Chr2g0113481 Rosa chinensis HOM05D000091 ORTHO05D009480 1.9e-06 56.2 117 55.6
Cfa002661 Carpinus fangiana HOM05D000091 ORTHO05D009480 3.3e-06 55.5 108 34.3
QL06p049508 Quercus lobata HOM05D000091 ORTHO05D009480 3.3e-06 55.5 51 52.9
SalBow3G1883 Salvia bowleyana HOM05D000091 ORTHO05D009480 3.3e-06 55.5 113 35.4
MELO3C018952.2 Cucumis melo HOM05D000091 ORTHO05D009480 4.3e-06 55.1 117 55.6


User provided reference genes

Program Settings