Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 0.0e+00 1692.6 919 100.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.0e-260 902.9 967 58.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-251 873.6 985 55.6
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 6.5e-251 871.3 985 55.5
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 6.5e-251 871.3 935 56.4
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.5e-242 840.9 974 53.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 8.8e-240 834.3 983 54.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 3.4e-239 832.4 975 55.1
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.3e-238 830.5 1022 51.9
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.2e-236 823.9 974 55.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.5e-236 822.4 979 54.1
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 5.0e-235 818.5 975 53.2
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.5e-234 817.0 977 52.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 9.8e-231 804.3 988 53.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.4e-229 799.7 974 52.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 5.4e-229 798.5 974 52.2
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 1.7e-227 793.5 983 51.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.5e-226 790.4 1004 49.8
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.2e-225 785.0 977 50.6
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.1e-224 782.7 987 51.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.8e-223 778.5 979 52.4
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.2e-222 776.5 1013 49.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.1e-221 772.3 912 53.1
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 7.8e-220 768.1 967 52.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.2e-217 760.8 981 51.0
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-216 757.3 917 52.8
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.8e-216 756.9 981 50.9
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.0e-216 755.7 961 51.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.4e-215 752.7 954 51.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.4e-215 752.3 954 51.7
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 6.4e-214 748.4 979 50.6
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.1e-211 738.8 974 51.0
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-210 736.9 959 50.5
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.3e-210 736.1 672 64.1
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 9.5e-210 734.6 939 48.3
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.7e-206 723.8 983 48.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 1.7e-206 723.8 985 50.1
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.4e-205 718.8 990 49.0
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.4e-205 718.8 992 48.9
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 3.5e-204 716.1 926 49.6
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.0e-204 715.3 979 49.3
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-202 709.9 989 48.6
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.5e-202 709.9 901 51.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 5.6e-202 708.8 977 49.1
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.6e-202 708.0 805 55.8
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.2e-201 707.6 979 47.3
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 2.6e-199 699.9 960 49.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.2e-198 696.8 907 49.1
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.9e-198 696.4 880 49.0
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.9e-197 693.7 960 47.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.4e-197 693.3 976 46.4
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.6e-196 690.6 979 47.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.3e-195 687.6 950 49.2
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.5e-194 684.1 925 49.2
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.9e-194 683.7 969 47.8
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.4e-192 677.6 978 47.2
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.0e-192 676.0 931 47.0
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.9e-192 675.2 924 47.9
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.0e-192 674.9 917 48.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-191 674.1 924 47.6
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 4.9e-190 669.1 927 48.0
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.2e-188 664.5 979 44.4
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.6e-188 664.1 938 47.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 3.5e-188 662.9 895 48.4
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.7e-185 652.9 979 45.3
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.4e-184 650.2 882 46.5
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.2e-183 647.9 915 48.0
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 3.4e-183 646.4 968 45.7
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.9e-182 643.3 944 48.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.9e-182 643.3 938 46.2
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.4e-181 641.0 946 47.4
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-181 640.6 946 46.4
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 4.2e-181 639.4 910 46.2
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.2e-180 637.9 912 48.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.2e-180 637.9 954 44.8
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.5e-180 636.3 882 46.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.6e-180 636.0 928 46.3
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.3e-179 634.4 947 45.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.6e-178 629.0 947 45.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.1e-176 624.8 942 46.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.4e-176 624.4 931 47.5
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 2.4e-176 623.6 952 47.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 2.6e-175 620.2 979 44.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 3.4e-175 619.8 933 44.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.8e-175 619.0 932 45.4
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.2e-174 617.1 932 45.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 6.5e-174 615.5 950 45.3
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.4e-173 614.4 1047 43.1
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 2.5e-173 613.6 971 44.6
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.1e-171 605.9 912 46.2
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 5.1e-171 605.9 915 46.2
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-170 604.7 885 47.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.3e-169 601.3 929 44.7
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.4e-168 597.0 911 44.5
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-167 594.0 962 44.7
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.6e-167 593.6 961 43.1
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 4.8e-161 572.8 879 45.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.2e-159 568.2 927 42.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 5.9e-159 565.8 935 43.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.7e-159 565.5 903 43.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 5.0e-158 562.8 603 56.9
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 8.5e-158 562.0 950 44.0
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.9e-155 553.1 914 44.5
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.0e-154 550.8 667 51.6
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 2.6e-154 550.4 918 43.5
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 7.4e-154 548.9 898 45.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.3e-153 548.1 897 45.0
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 8.2e-153 545.4 929 44.2
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 8.2e-153 545.4 970 42.9
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.4e-151 540.0 914 43.8
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 5.0e-150 536.2 896 43.2
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 6.7e-147 525.8 917 42.5
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.4e-146 522.3 701 48.6
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 9.7e-146 521.9 907 42.6
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.2e-145 518.8 933 40.9
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.7e-142 511.1 904 42.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.7e-140 503.1 957 42.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.1e-136 491.9 904 39.9
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.1e-136 491.9 929 40.8
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 7.7e-135 485.7 920 43.0
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-134 484.6 894 43.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.7e-134 484.6 894 43.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.2e-134 484.2 890 42.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.6e-132 476.9 942 41.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 6.1e-132 476.1 890 42.2
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 8.0e-132 475.7 942 41.2
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.4e-131 474.9 945 41.1
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-131 474.6 722 47.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.8e-131 474.6 945 41.2
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.8e-131 474.6 945 41.5
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 5.2e-131 473.0 956 39.4
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.1e-128 463.8 631 49.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.3e-126 457.6 891 40.9
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 9.2e-120 435.6 877 38.8
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 7.8e-119 432.6 499 54.5
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.0e-118 432.2 695 45.3
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 9.8e-114 415.6 502 51.2
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.9e-113 414.1 839 41.5
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 3.9e-110 403.7 889 35.9
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 3.7e-105 387.1 831 36.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.6e-100 370.5 898 34.4
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.4e-98 363.6 894 36.8
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.1e-91 342.4 624 42.1
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.6e-90 337.8 1025 32.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 2.2e-89 334.7 566 40.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.1e-87 328.2 438 50.9
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.7e-81 308.5 1003 34.2
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.2e-80 303.9 448 49.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-79 302.4 338 54.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 8.4e-73 279.6 828 32.5
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 4.3e-69 267.3 291 51.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.2e-65 255.0 750 32.4
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.8e-65 254.2 782 30.1
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.1e-63 248.4 378 44.4
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.0e-62 246.1 746 33.5
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.9e-56 225.3 403 45.4
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.9e-56 225.3 752 31.8
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.3e-53 214.5 356 44.1
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.5e-50 204.1 228 52.2
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.5e-45 188.3 276 48.6
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 6.3e-44 183.7 275 48.4
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.7e-41 175.6 541 27.4
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-37 162.5 576 32.5
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-37 159.8 276 46.4
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 1.5e-34 152.5 111 63.1
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.0e-34 152.1 291 36.8
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.9e-34 150.6 296 38.2
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 5.9e-26 124.0 213 43.7
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.6e-23 115.9 98 57.1
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-22 113.2 98 59.2
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.1e-19 101.7 118 50.8
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-18 99.4 98 69.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 7.7e-18 97.1 150 36.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.5e-16 92.0 135 44.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.2e-12 79.0 53 66.0
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-11 75.1 74 54.1
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 9.1e-11 73.6 90 52.2
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 2.0e-10 72.4 160 36.9
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.3e-09 68.9 99 45.5
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.3e-08 65.1 154 33.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 9.5e-08 63.5 82 37.8


User provided reference genes

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