Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C784T1 Lonicera japonica HOM05D005164 ORTHO05D006398 1.6e-214 749.2 398 100.0
TWI56G0324 Tripterygium wilfordii HOM05D005164 ORTHO05D006398 6.4e-203 710.7 398 93.7
GSVIVG01009684001 Vitis vinifera HOM05D005164 ORTHO05D006398 8.3e-203 710.3 398 94.7
Dinv36062 Davidia involucrata HOM05D005164 ORTHO05D006398 3.2e-202 708.4 398 94.7
Ciclev10001386m.g Citrus clementina HOM05D005164 ORTHO05D006398 7.1e-202 707.2 398 93.7
COL.COLO4_26343 Corchorus olitorius HOM05D005164 ORTHO05D006398 9.2e-202 706.8 398 93.2
Thecc.08G024200 Theobroma cacao HOM05D005164 ORTHO05D006398 9.2e-202 706.8 398 93.0
QL02p007897 Quercus lobata HOM05D005164 ORTHO05D006398 1.6e-201 706.1 397 93.5
Manes.18G028500 Manihot esculenta HOM05D005164 ORTHO05D006398 2.1e-201 705.7 398 93.7
CiPaw.16G055400 Carya illinoinensis HOM05D005164 ORTHO05D006398 3.5e-201 704.9 398 92.7
Gohir.A03G078200 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.5e-201 704.9 398 93.0
CiPaw.15G075600 Carya illinoinensis HOM05D005164 ORTHO05D006398 4.6e-201 704.5 398 92.7
Lsat_1_v5_gn_1_17561 Lactuca sativa HOM05D005164 ORTHO05D006398 7.8e-201 703.7 398 93.2
Gohir.D02G094300 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.0e-200 703.4 398 92.7
Gorai.005G107200 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.0e-200 703.4 398 92.7
Cfa018135 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.3e-200 703.0 398 92.5
TAR376G0296 Trochodendron aralioides HOM05D005164 ORTHO05D006398 1.7e-200 702.6 398 93.5
Potri.014G180800 Populus trichocarpa HOM05D005164 ORTHO05D006398 2.3e-200 702.2 398 93.2
Duzib041G0411 Durio zibethinus HOM05D005164 ORTHO05D006398 3.9e-200 701.4 398 92.2
HanXRQChr02g0040181 Helianthus annuus HOM05D005164 ORTHO05D006398 8.6e-200 700.3 398 92.7
Potri.002G263200 Populus trichocarpa HOM05D005164 ORTHO05D006398 5.6e-199 697.6 398 91.7
Nn5g29540 Nelumbo nucifera HOM05D005164 ORTHO05D006398 1.6e-198 696.0 398 92.2
DCAR_019523 Daucus carota HOM05D005164 ORTHO05D006398 2.8e-198 695.3 398 91.7
ECA247G1488 Erigeron canadensis HOM05D005164 ORTHO05D006398 3.6e-198 694.9 398 92.5
Eucgr.F01909 Eucalyptus grandis HOM05D005164 ORTHO05D006398 4.7e-198 694.5 398 91.2
RcHm_v2.0_Chr6g0300751 Rosa chinensis HOM05D005164 ORTHO05D006398 8.1e-198 693.7 398 91.0
Aqoxy6G01049 Aquilegia oxysepala HOM05D005164 ORTHO05D006398 3.1e-197 691.8 398 89.9
CANSAT64G0480 Cannabis sativa HOM05D005164 ORTHO05D006398 3.1e-197 691.8 398 91.7
Cc10_g03080 Coffea canephora HOM05D005164 ORTHO05D006398 2.6e-196 688.7 398 91.7
Glyma.09G231100 Glycine max HOM05D005164 ORTHO05D006398 2.6e-196 688.7 398 91.0
Glyma.12G005400 Glycine max HOM05D005164 ORTHO05D006398 3.4e-196 688.3 398 91.0
Gohir.A05G260000 Gossypium hirsutum HOM05D005164 ORTHO05D006398 3.4e-196 688.3 398 90.7
Gorai.002G128900 Gossypium raimondii HOM05D005164 ORTHO05D006398 1.3e-195 686.4 398 89.4
PGR031G3751 Punica granatum HOM05D005164 ORTHO05D006398 1.3e-195 686.4 398 89.7
Ca_25003_v3 Cicer arietinum L. HOM05D005164 ORTHO05D006398 1.7e-195 686.0 398 89.9
MELO3C003848.2 Cucumis melo HOM05D005164 ORTHO05D006398 1.7e-195 686.0 398 90.7
CsaV3_3G045000 Cucumis sativus L. HOM05D005164 ORTHO05D006398 1.7e-195 686.0 398 90.7
Psat3g167280 Pisum sativum HOM05D005164 ORTHO05D006398 2.9e-195 685.3 398 89.9
Lj3g0003260 Lotus japonicus HOM05D005164 ORTHO05D006398 3.8e-195 684.9 398 90.5
MSTRG.24294 Avicennia marina HOM05D005164 ORTHO05D006398 8.4e-195 683.7 398 90.5
CANSAT25G0119 Cannabis sativa HOM05D005164 ORTHO05D006398 8.4e-195 683.7 403 89.8
Gohir.A01G116500 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-194 683.3 398 89.4
Gohir.D01G104900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.1e-194 683.3 398 88.9
SalBow8G2733 Salvia bowleyana HOM05D005164 ORTHO05D006398 1.1e-194 683.3 398 89.9
Sc02g0006310 Simmondsia chinensis HOM05D005164 ORTHO05D006398 1.4e-194 682.9 398 89.7
Gohir.D05G261900 Gossypium hirsutum HOM05D005164 ORTHO05D006398 1.9e-194 682.6 398 90.2
Solyc04g080160.3 Solanum lycopersicum HOM05D005164 ORTHO05D006398 1.9e-194 682.6 398 90.5
Sopen04g033750 Solanum pennellii HOM05D005164 ORTHO05D006398 1.9e-194 682.6 398 90.5
Phvul.011G006200 Phaseolus vulgaris HOM05D005164 ORTHO05D006398 2.4e-194 682.2 398 90.2
VMungo1127G0366 Vigna mungo HOM05D005164 ORTHO05D006398 3.2e-194 681.8 398 90.2
FvH4_2g40000 Fragaria vesca HOM05D005164 ORTHO05D006398 4.2e-194 681.4 399 89.5
FAN27G0257 Fragaria x ananassa HOM05D005164 ORTHO05D006398 4.2e-194 681.4 399 89.5
Sed0021376 Sechium edule HOM05D005164 ORTHO05D006398 4.2e-194 681.4 398 90.2
EL10Ac8g20456 Beta vulgaris HOM05D005164 ORTHO05D006398 5.4e-194 681.0 398 89.7
PGSC0003DMG400005163 Solanum tuberosum HOM05D005164 ORTHO05D006398 5.4e-194 681.0 398 90.2
FAN15G2586 Fragaria x ananassa HOM05D005164 ORTHO05D006398 1.2e-193 679.9 399 89.2
Medtr0173s0030 Medicago truncatula HOM05D005164 ORTHO05D006398 1.2e-193 679.9 398 89.2
Peaxi162Scf00690g00117 Petunia axillaris HOM05D005164 ORTHO05D006398 1.2e-193 679.9 398 91.0
ATR0733G076 Amborella trichopoda HOM05D005164 ORTHO05D006398 1.6e-193 679.5 398 88.9
Gorai.009G273800 Gossypium raimondii HOM05D005164 ORTHO05D006398 4.6e-193 677.9 401 89.5
FAN20G1227 Fragaria x ananassa HOM05D005164 ORTHO05D006398 3.9e-192 674.9 399 88.5
Sed0001534 Sechium edule HOM05D005164 ORTHO05D006398 3.9e-192 674.9 399 89.5
AUR62014895 Chenopodium quinoa HOM05D005164 ORTHO05D006398 4.3e-191 671.4 398 89.2
Migut.N00498 Erythranthe guttata HOM05D005164 ORTHO05D006398 4.3e-191 671.4 398 88.9
CAN.G1126.40 Capsicum annuum HOM05D005164 ORTHO05D006398 2.1e-190 669.1 398 88.9
Hund21200 Selenicereus undatus HOM05D005164 ORTHO05D006398 3.6e-190 668.3 398 89.2
MD08G1033300 Malus domestica HOM05D005164 ORTHO05D006398 1.4e-189 666.4 398 87.7
CDE02G4403 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 2.4e-189 665.6 398 87.2
THA.LOC104814156 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 3.1e-189 665.2 399 87.5
THA.LOC104822841 Tarenaya hassleriana HOM05D005164 ORTHO05D006398 5.3e-189 664.5 398 86.9
Os03g0197400 Oryza sativa ssp. japonica HOM05D005164 ORTHO05D006398 1.5e-188 662.9 400 86.5
MD15G1029900 Malus domestica HOM05D005164 ORTHO05D006398 2.9e-187 658.7 406 85.7
Haze_17990 Corylus avellana HOM05D005164 ORTHO05D006398 1.9e-186 656.0 501 73.7
AT5G42970 Arabidopsis thaliana HOM05D005164 ORTHO05D006398 1.6e-185 652.9 398 85.4
Hma1.2p1_0023F.1_g014900 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 2.1e-185 652.5 490 75.3
Carub.0008s0578 Capsella rubella HOM05D005164 ORTHO05D006398 7.8e-185 650.6 398 84.9
CDE01G0241 Ceratophyllum demersum HOM05D005164 ORTHO05D006398 7.8e-185 650.6 402 85.3
Sp2g07720 Schrenkiella parvula HOM05D005164 ORTHO05D006398 7.8e-185 650.6 398 85.4
Oeu009868.2 Olea europaea HOM05D005164 ORTHO05D006398 6.6e-184 647.5 477 75.7
unitig_22.g6774 Utricularia gibba HOM05D005164 ORTHO05D006398 1.5e-183 646.4 392 87.2
ClCG05G019140 Citrullus lanatus HOM05D005164 ORTHO05D006398 1.9e-183 646.0 398 86.9
Thhalv10003436m.g Eutrema salsugineum HOM05D005164 ORTHO05D006398 3.3e-183 645.2 398 85.2
AL8G17800 Arabidopsis lyrata HOM05D005164 ORTHO05D006398 7.3e-183 644.0 398 84.7
CARHR181050 Cardamine hirsuta HOM05D005164 ORTHO05D006398 1.3e-182 643.3 398 84.4
AUR62031100 Chenopodium quinoa HOM05D005164 ORTHO05D006398 1.3e-182 643.3 398 86.2
A06p48120 Brassica napus HOM05D005164 ORTHO05D006398 1.6e-182 642.9 398 84.2
BraA06t27681Z Brassica rapa HOM05D005164 ORTHO05D006398 1.6e-182 642.9 398 84.2
Zm00001eb008060 Zea mays HOM05D005164 ORTHO05D006398 2.1e-182 642.5 440 78.4
BcaC06g31734 Brassica carinata HOM05D005164 ORTHO05D006398 2.8e-182 642.1 398 83.9
Aa31LG9G13090 Aethionema arabicum HOM05D005164 ORTHO05D006398 1.1e-181 640.2 398 84.9
BcaC02g10785 Brassica carinata HOM05D005164 ORTHO05D006398 1.4e-181 639.8 398 83.9
C04p25110 Brassica napus HOM05D005164 ORTHO05D006398 1.4e-181 639.8 398 83.9
BolC4t24015H Brassica oleracea HOM05D005164 ORTHO05D006398 1.4e-181 639.8 398 83.9
BcaC03g16546 Brassica carinata HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 84.2
A02p27610 Brassica napus HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 84.2
C02p43640 Brassica napus HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 84.2
BolC2t10406H Brassica oleracea HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 84.2
BraA02t07794Z Brassica rapa HOM05D005164 ORTHO05D006398 1.8e-181 639.4 398 84.2
Sabra14G0141000 Salix brachista HOM05D005164 ORTHO05D006398 1.8e-181 639.4 437 81.5
Prupe.1G381600 Prunus persica HOM05D005164 ORTHO05D006398 1.2e-180 636.7 398 85.7
BcaB07g30597 Brassica carinata HOM05D005164 ORTHO05D006398 5.8e-180 634.4 398 83.2
SGA_v2.0_scaffold326G48708 Striga asiatica HOM05D005164 ORTHO05D006398 1.3e-179 633.3 355 93.5
Hma1.2p1_0469F.1_g159190 Hydrangea macrophylla HOM05D005164 ORTHO05D006398 1.7e-179 632.9 439 80.9
Rhsim06G0035000 Rhododendron simsii HOM05D005164 ORTHO05D006398 1.7e-179 632.9 418 82.8
PSO675G3600 Papaver somniferum HOM05D005164 ORTHO05D006398 4.9e-179 631.3 398 82.9
PSO541G6137 Papaver somniferum HOM05D005164 ORTHO05D006398 1.9e-178 629.4 398 82.4
Nitab4.5_0000110g0500 Nicotiana tabacum HOM05D005164 ORTHO05D006398 2.4e-178 629.0 398 85.2
Actinidia22558 Actinidia chinensis HOM05D005164 ORTHO05D006398 3.9e-176 621.7 368 89.7
Nitab4.5_0010187g0010 Nicotiana tabacum HOM05D005164 ORTHO05D006398 5.1e-176 621.3 398 84.4
Atru.chr13.515 Acer truncatum HOM05D005164 ORTHO05D006398 3.3e-175 618.6 354 92.1
MBI17_g39721_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 6.2e-174 614.4 431 78.9
Manes.05G161900 Manihot esculenta HOM05D005164 ORTHO05D006398 7.6e-172 607.4 354 89.8
Mapoly0072s0034 Marchantia polymorpha HOM05D005164 ORTHO05D006398 9.9e-172 607.1 398 78.1
Pp3c5_28450 Physcomitrium patens HOM05D005164 ORTHO05D006398 1.3e-166 590.1 398 76.6
SMO364G0673 Selaginella moellendorffii HOM05D005164 ORTHO05D006398 1.4e-165 586.6 396 75.5
TPR.G3648 Trifolium pratense HOM05D005164 ORTHO05D006398 1.4e-165 586.6 387 81.9
AagrBONN_evm.TU.Sc2ySwM_117.2514 Anthoceros agrestis HOM05D005164 ORTHO05D006398 3.1e-165 585.5 397 75.1
vmacro21627 Vaccinium macrocarpon HOM05D005164 ORTHO05D006398 4.1e-157 558.5 398 77.6
Duzib093G0265 Durio zibethinus HOM05D005164 ORTHO05D006398 1.1e-154 550.4 398 76.4
CBR_g36268 Chara braunii HOM05D005164 ORTHO05D006398 9.4e-146 520.8 396 68.7
HPP92_024905 Vanilla planifolia HOM05D005164 ORTHO05D006398 2.8e-142 509.2 347 78.4
Actinidia15313 Actinidia chinensis HOM05D005164 ORTHO05D006398 2.9e-139 499.2 419 68.5
CSS0020238 Camellia sinensis var. sinensis HOM05D005164 ORTHO05D006398 1.2e-137 493.8 271 95.2
CAN.G416.53 Capsicum annuum HOM05D005164 ORTHO05D006398 5.9e-124 448.4 312 78.5
RcHm_v2.0_Chr2g0166611 Rosa chinensis HOM05D005164 ORTHO05D006398 8.9e-112 407.9 226 93.8
Cre11.g478240 Chlamydomonas reinhardtii HOM05D005164 ORTHO05D006398 1.3e-107 394.0 392 53.8
MCO16G668 Micromonas commoda HOM05D005164 ORTHO05D006398 5.2e-104 382.1 402 51.0
Cpa.g.sc64.68 Carica papaya HOM05D005164 ORTHO05D006398 3.7e-102 375.9 216 91.7
PRCOL_00006114 Prasinoderma coloniale HOM05D005164 ORTHO05D006398 7.3e-90 335.1 402 48.8
SEGI_27147 Sequoiadendron giganteum HOM05D005164 ORTHO05D006398 7.1e-85 318.5 211 78.2
Sopen04g033730 Solanum pennellii HOM05D005164 ORTHO05D006398 1.5e-82 310.8 214 77.6
GSVIVG01023193001 Vitis vinifera HOM05D005164 ORTHO05D006398 2.1e-68 263.8 150 92.0
GSVIVG01003780001 Vitis vinifera HOM05D005164 ORTHO05D006398 1.0e-67 261.5 150 90.7
Cfa024373 Carpinus fangiana HOM05D005164 ORTHO05D006398 1.3e-57 228.0 319 42.3
MBI17_g35116_MAGBIO Magnolia biondii HOM05D005164 ORTHO05D006398 1.4e-56 224.6 184 71.2
Carub.0004s0266 Capsella rubella HOM05D005164 ORTHO05D006398 2.3e-51 207.2 146 74.7
arahy.Tifrunner.gnm1.ann1.ABX6XB Arachis hypogaea HOM05D005164 ORTHO05D006398 3.4e-39 166.8 243 48.1
Haze_26904 Corylus avellana HOM05D005164 ORTHO05D006398 1.3e-38 164.9 205 43.9
arahy.Tifrunner.gnm1.ann1.D3INNH Arachis hypogaea HOM05D005164 ORTHO05D006398 1.8e-35 154.5 95 85.3
arahy.Tifrunner.gnm1.ann1.R33BY8 Arachis hypogaea HOM05D005164 ORTHO05D006398 1.8e-35 154.5 95 85.3
TPR.G136 Trifolium pratense HOM05D005164 ORTHO05D006398 2.0e-15 87.8 49 81.6
arahy.Tifrunner.gnm1.ann1.ZV61IE Arachis hypogaea HOM05D005164 ORTHO05D006398 2.5e-13 80.9 76 63.2
arahy.Tifrunner.gnm1.ann1.2K5AT5 Arachis hypogaea HOM05D005164 ORTHO05D006398 2.4e-08 64.3 52 65.4
ECA240G1489 Erigeron canadensis HOM05D001185 ORTHO05D003777 2.0e-07 61.2 319 23.8
Lalb_Chr07g0184681 Lupinus albus HOM05D001185 ORTHO05D003777 2.7e-07 60.8 318 23.3
PSO170G5175 Papaver somniferum HOM05D001185 ORTHO05D003777 4.5e-07 60.1 319 23.5
Sp6g33510 Schrenkiella parvula HOM05D001185 ORTHO05D003777 7.7e-07 59.3 319 23.2
Lj4g0024278 Lotus japonicus HOM05D001185 ORTHO05D003777 1.3e-06 58.5 318 23.9
PSO700G0370 Papaver somniferum HOM05D001185 ORTHO05D003777 1.3e-06 58.5 319 23.5
CANSAT01G1300 Cannabis sativa HOM05D001185 ORTHO05D003777 2.2e-06 57.8 323 22.9
Lj2A569G64 Lonicera japonica HOM05D001185 ORTHO05D003777 2.2e-06 57.8 322 23.0
Thecc.05G196500 Theobroma cacao HOM05D001185 ORTHO05D003777 2.2e-06 57.8 319 23.8
TWI31G0616 Tripterygium wilfordii HOM05D001185 ORTHO05D003777 2.9e-06 57.4 319 22.6
Ciclev10025611m.g Citrus clementina HOM05D001185 ORTHO05D003777 3.8e-06 57.0 319 23.5
Potri.007G076900 Populus trichocarpa HOM05D001185 ORTHO05D003777 3.8e-06 57.0 319 23.2
SalBow5G0567 Salvia bowleyana HOM05D001185 ORTHO05D003777 3.8e-06 57.0 327 22.6
Carub.0008s2557 Capsella rubella HOM05D001185 ORTHO05D003777 5.0e-06 56.6 319 23.2
Ca_17672_v3 Cicer arietinum L. HOM05D001185 ORTHO05D003777 5.0e-06 56.6 318 23.6
Duzib177G1116 Durio zibethinus HOM05D001185 ORTHO05D003777 5.0e-06 56.6 319 24.1
PSO339G0818 Papaver somniferum HOM05D001185 ORTHO05D003777 5.0e-06 56.6 319 22.9
Sed0017410 Sechium edule HOM05D001185 ORTHO05D003777 5.0e-06 56.6 320 21.9
Sed0021912 Sechium edule HOM05D001185 ORTHO05D003777 5.0e-06 56.6 319 22.3
SGA_v2.0_scaffold2G01264 Striga asiatica HOM05D001185 ORTHO05D003777 5.0e-06 56.6 319 23.5
VMungo0251G0756 Vigna mungo HOM05D001185 ORTHO05D003777 5.0e-06 56.6 318 23.0
BolC3t13011H Brassica oleracea HOM05D001185 ORTHO05D003777 6.5e-06 56.2 319 23.2
MD02G1223100 Malus domestica HOM05D001185 ORTHO05D003777 6.5e-06 56.2 319 22.9
Sabra07G0064800 Salix brachista HOM05D001185 ORTHO05D003777 6.5e-06 56.2 319 23.5
SGA_v2.0_scaffold51G18767 Striga asiatica HOM05D001185 ORTHO05D003777 6.5e-06 56.2 319 23.2
Zm00001eb259300 Zea mays HOM05D001185 ORTHO05D003777 6.5e-06 56.2 319 22.6
Atru.chr4.692 Acer truncatum HOM05D001185 ORTHO05D003777 8.5e-06 55.8 323 23.8
Carub.0006s0834 Capsella rubella HOM05D001185 ORTHO05D003777 8.5e-06 55.8 319 22.9
Glyma.05G186600 Glycine max HOM05D001185 ORTHO05D003777 8.5e-06 55.8 318 23.6
HanXRQChr05g0138241 Helianthus annuus HOM05D001185 ORTHO05D003777 8.5e-06 55.8 319 23.5
HanXRQChr10g0284121 Helianthus annuus HOM05D001185 ORTHO05D003777 8.5e-06 55.8 319 22.9


User provided reference genes

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