Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C775G11 Lonicera japonica HOM05D001625 ORTHO05D008114 4.8e-134 481.1 234 100.0
TAR381G0900 Trochodendron aralioides HOM05D001625 ORTHO05D008114 6.6e-91 337.8 234 73.9
Dinv35971 Davidia involucrata HOM05D001625 ORTHO05D008114 4.3e-90 335.1 234 74.4
GSVIVG01009520001 Vitis vinifera HOM05D001625 ORTHO05D008114 8.1e-89 330.9 237 71.7
Hma1.2p1_0718F.1_g208400 Hydrangea macrophylla HOM05D001625 ORTHO05D008114 2.4e-88 329.3 234 73.5
Peaxi162Scf00064g00122 Petunia axillaris HOM05D001625 ORTHO05D008114 1.7e-86 323.2 234 71.4
CSS0045021 Camellia sinensis var. sinensis HOM05D001625 ORTHO05D008114 2.9e-86 322.4 235 70.6
PGSC0003DMG400015444 Solanum tuberosum HOM05D001625 ORTHO05D008114 2.9e-86 322.4 235 70.2
Solyc12g088880.2 Solanum lycopersicum HOM05D001625 ORTHO05D008114 3.8e-86 322.0 235 70.6
ECA247G1238 Erigeron canadensis HOM05D001625 ORTHO05D008114 6.4e-86 321.2 234 71.4
Nitab4.5_0001845g0020 Nicotiana tabacum HOM05D001625 ORTHO05D008114 8.4e-86 320.9 234 69.7
Sopen12g030770 Solanum pennellii HOM05D001625 ORTHO05D008114 1.1e-85 320.5 235 70.2
Nn1g00509 Nelumbo nucifera HOM05D001625 ORTHO05D008114 5.4e-85 318.2 235 68.5
SalBow7G2586 Salvia bowleyana HOM05D001625 ORTHO05D008114 5.4e-85 318.2 234 68.8
Nitab4.5_0004184g0040 Nicotiana tabacum HOM05D001625 ORTHO05D008114 3.5e-84 315.5 234 66.7
SGA_v2.0_scaffold208G41993 Striga asiatica HOM05D001625 ORTHO05D008114 1.3e-83 313.5 234 70.1
Migut.C00593 Erythranthe guttata HOM05D001625 ORTHO05D008114 3.0e-83 312.4 232 68.5
Nitab4.5_0000453g0190 Nicotiana tabacum HOM05D001625 ORTHO05D008114 3.9e-83 312.0 234 68.8
Actinidia23267 Actinidia chinensis HOM05D001625 ORTHO05D008114 5.1e-83 311.6 235 69.8
Lsat_1_v5_gn_1_20920 Lactuca sativa HOM05D001625 ORTHO05D008114 1.1e-82 310.5 234 68.4
Cc10_g04290 Coffea canephora HOM05D001625 ORTHO05D008114 1.5e-82 310.1 237 70.9
Cfa018529 Carpinus fangiana HOM05D001625 ORTHO05D008114 4.3e-82 308.5 234 67.5
Prupe.1G438100 Prunus persica HOM05D001625 ORTHO05D008114 4.3e-82 308.5 235 67.7
CsaV3_4G034210 Cucumis sativus L. HOM05D001625 ORTHO05D008114 5.6e-82 308.1 235 71.1
HanXRQChr02g0037721 Helianthus annuus HOM05D001625 ORTHO05D008114 5.6e-82 308.1 234 67.1
DCAR_019460 Daucus carota HOM05D001625 ORTHO05D008114 7.3e-82 307.8 239 66.5
MD08G1103100 Malus domestica HOM05D001625 ORTHO05D008114 2.1e-81 306.2 235 67.7
vmacro21534 Vaccinium macrocarpon HOM05D001625 ORTHO05D008114 2.1e-81 306.2 234 67.5
Aa31LG8G12870 Aethionema arabicum HOM05D001625 ORTHO05D008114 3.6e-81 305.4 234 68.4
MBI02_g17332_MAGBIO Magnolia biondii HOM05D001625 ORTHO05D008114 3.6e-81 305.4 234 66.7
Rhsim06G0048400 Rhododendron simsii HOM05D001625 ORTHO05D008114 4.8e-81 305.1 234 69.2
Sp7g31070 Schrenkiella parvula HOM05D001625 ORTHO05D008114 6.2e-81 304.7 236 66.5
AL7G18200 Arabidopsis lyrata HOM05D001625 ORTHO05D008114 8.1e-81 304.3 235 68.5
MSTRG.1337 Avicennia marina HOM05D001625 ORTHO05D008114 1.1e-80 303.9 234 68.4
COL.COLO4_26480 Corchorus olitorius HOM05D001625 ORTHO05D008114 1.1e-80 303.9 235 67.7
CANSAT11G0880 Cannabis sativa HOM05D001625 ORTHO05D008114 3.1e-80 302.4 234 65.4
Carub.0007s0712 Capsella rubella HOM05D001625 ORTHO05D008114 3.1e-80 302.4 235 68.1
MELO3C016742.2 Cucumis melo HOM05D001625 ORTHO05D008114 5.3e-80 301.6 236 69.1
Thecc.08G010700 Theobroma cacao HOM05D001625 ORTHO05D008114 5.3e-80 301.6 235 67.7
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 9.0e-80 300.8 235 66.8
Hund17582 Selenicereus undatus HOM05D001625 ORTHO05D008114 9.0e-80 300.8 236 66.5
BcaNung02168 Brassica carinata HOM05D001625 ORTHO05D008114 1.2e-79 300.4 234 65.8
A03p61940 Brassica napus HOM05D001625 ORTHO05D008114 1.2e-79 300.4 234 65.8
Atru.chr13.653 Acer truncatum HOM05D001625 ORTHO05D008114 1.5e-79 300.1 235 68.5
BolC7t46405H Brassica oleracea HOM05D001625 ORTHO05D008114 1.5e-79 300.1 234 65.8
BraA03t15233Z Brassica rapa HOM05D001625 ORTHO05D008114 1.5e-79 300.1 234 65.8
Gohir.A05G201600 Gossypium hirsutum HOM05D001625 ORTHO05D008114 2.0e-79 299.7 235 66.4
Gohir.D05G204700 Gossypium hirsutum HOM05D001625 ORTHO05D008114 2.0e-79 299.7 235 67.7
Gorai.009G211000 Gossypium raimondii HOM05D001625 ORTHO05D008114 2.0e-79 299.7 235 67.7
QL02p005341 Quercus lobata HOM05D001625 ORTHO05D008114 2.0e-79 299.7 236 66.5
TPR.G35860 Trifolium pratense HOM05D001625 ORTHO05D008114 2.0e-79 299.7 235 68.1
Thhalv10025657m.g Eutrema salsugineum HOM05D001625 ORTHO05D008114 2.6e-79 299.3 236 65.7
VMungo1309G1770 Vigna mungo HOM05D001625 ORTHO05D008114 3.4e-79 298.9 235 66.8
Aqoxy5G01260 Aquilegia oxysepala HOM05D001625 ORTHO05D008114 4.5e-79 298.5 236 66.1
CiPaw.15G061300 Carya illinoinensis HOM05D001625 ORTHO05D008114 4.5e-79 298.5 235 66.4
Sed0008971 Sechium edule HOM05D001625 ORTHO05D008114 4.5e-79 298.5 235 68.1
C07p59600 Brassica napus HOM05D001625 ORTHO05D008114 5.8e-79 298.1 234 65.4
Aqoxy5G01262 Aquilegia oxysepala HOM05D001625 ORTHO05D008114 7.6e-79 297.7 236 66.5
CAN.G1422.8 Capsicum annuum HOM05D001625 ORTHO05D008114 9.9e-79 297.4 235 64.3
Eucgr.F02362 Eucalyptus grandis HOM05D001625 ORTHO05D008114 1.7e-78 296.6 235 65.1
Oeu043552.1 Olea europaea HOM05D001625 ORTHO05D008114 1.7e-78 296.6 235 65.5
CARHR241410 Cardamine hirsuta HOM05D001625 ORTHO05D008114 2.2e-78 296.2 235 66.8
Duzib116G0543 Durio zibethinus HOM05D001625 ORTHO05D008114 2.2e-78 296.2 235 66.4
Medtr3g101500 Medicago truncatula HOM05D001625 ORTHO05D008114 2.2e-78 296.2 235 66.4
FvH4_2g34590 Fragaria vesca HOM05D001625 ORTHO05D008114 2.9e-78 295.8 235 65.1
QL02p005347 Quercus lobata HOM05D001625 ORTHO05D008114 2.9e-78 295.8 236 66.5
Sabra02G0099900 Salix brachista HOM05D001625 ORTHO05D008114 2.9e-78 295.8 235 67.2
FAN20G1997 Fragaria x ananassa HOM05D001625 ORTHO05D008114 3.8e-78 295.4 235 64.7
Cpa.g.sc49.3 Carica papaya HOM05D001625 ORTHO05D008114 4.9e-78 295.0 232 64.2
Lalb_Chr23g0267001 Lupinus albus HOM05D001625 ORTHO05D008114 6.4e-78 294.7 237 65.0
Phvul.009G064000 Phaseolus vulgaris HOM05D001625 ORTHO05D008114 6.4e-78 294.7 234 65.4
FAN15G0193 Fragaria x ananassa HOM05D001625 ORTHO05D008114 8.4e-78 294.3 235 64.3
Ah.05g168810 Amaranthus hybridus HOM05D001625 ORTHO05D008114 1.1e-77 293.9 236 66.1
PGR031G0488 Punica granatum HOM05D001625 ORTHO05D008114 1.1e-77 293.9 235 66.4
RcHm_v2.0_Chr6g0307711 Rosa chinensis HOM05D001625 ORTHO05D008114 1.4e-77 293.5 235 64.7
Ca_15956_v3 Cicer arietinum L. HOM05D001625 ORTHO05D008114 1.9e-77 293.1 235 66.4
Lsat_1_v5_gn_1_20400 Lactuca sativa HOM05D001625 ORTHO05D008114 3.2e-77 292.4 234 64.5
ATR0100G004 Amborella trichopoda HOM05D001625 ORTHO05D008114 7.1e-77 291.2 234 64.1
HPP92_005781 Vanilla planifolia HOM05D001625 ORTHO05D008114 9.3e-77 290.8 235 62.6
HPP92_005809 Vanilla planifolia HOM05D001625 ORTHO05D008114 9.3e-77 290.8 235 62.6
arahy.Tifrunner.gnm1.ann1.SS1ETW Arachis hypogaea HOM05D001625 ORTHO05D008114 1.2e-76 290.4 235 64.7
EL10Ac1g01745 Beta vulgaris HOM05D001625 ORTHO05D008114 2.7e-76 289.3 236 65.3
DCAR_019459 Daucus carota HOM05D000838 ORTHO05D008114 2.7e-76 289.3 231 65.4
Glyma.06G038700 Glycine max HOM05D001625 ORTHO05D008114 3.5e-76 288.9 234 63.2
RcHm_v2.0_Chr6g0307561 Rosa chinensis HOM05D001625 ORTHO05D008114 3.5e-76 288.9 236 64.4
arahy.Tifrunner.gnm1.ann1.GU4KEX Arachis hypogaea HOM05D001625 ORTHO05D008114 1.0e-75 287.3 235 64.3
Psat5g077160 Pisum sativum HOM05D001625 ORTHO05D008114 1.0e-75 287.3 235 65.5
TWI56G0317 Tripterygium wilfordii HOM05D001625 ORTHO05D008114 1.3e-75 287.0 236 65.7
Manes.18G032300 Manihot esculenta HOM05D001625 ORTHO05D008114 3.9e-75 285.4 235 64.7
SEGI_26518 Sequoiadendron giganteum HOM05D001625 ORTHO05D008114 1.1e-74 283.9 238 61.8
Potri.002G127400 Populus trichocarpa HOM05D001625 ORTHO05D008114 1.9e-74 283.1 235 63.0
PSO170G1058 Papaver somniferum HOM05D001625 ORTHO05D008114 3.3e-74 282.3 236 63.1
PSO210G4359 Papaver somniferum HOM05D001625 ORTHO05D008114 1.3e-73 280.4 236 62.3
AUR62022425 Chenopodium quinoa HOM05D001625 ORTHO05D008114 2.1e-73 279.6 236 63.6
Os03g0184550 Oryza sativa ssp. japonica HOM05D001625 ORTHO05D008114 1.4e-72 276.9 236 60.6
Sabra02G0099800 Salix brachista HOM05D001625 ORTHO05D008114 3.4e-71 272.3 262 55.3
Zm00001eb006380 Zea mays HOM05D001625 ORTHO05D008114 3.4e-71 272.3 236 60.2
Sc26g0003990 Simmondsia chinensis HOM05D001625 ORTHO05D008114 4.0e-64 248.8 209 63.6
Lj1g0004345 Lotus japonicus HOM05D001625 ORTHO05D008114 6.9e-64 248.1 235 58.7
Nn1g05825 Nelumbo nucifera HOM05D001625 ORTHO05D008114 9.0e-64 247.7 240 57.9
AT4G33360 Arabidopsis thaliana HOM05D001625 ORTHO05D008114 9.3e-61 237.7 210 61.4
Pp3c17_9770 Physcomitrium patens HOM05D001625 ORTHO05D008114 9.3e-53 211.1 239 47.3
SMO201G0007 Selaginella moellendorffii HOM05D001625 ORTHO05D008114 1.8e-51 206.8 237 48.1
Mapoly0011s0141 Marchantia polymorpha HOM05D001625 ORTHO05D008114 1.9e-50 203.4 234 45.3
ClCG05G019760 Citrullus lanatus HOM05D001625 ORTHO05D008114 2.0e-39 166.8 98 81.6
FAN27G2722 Fragaria x ananassa HOM05D000838 ORTHO05D000656 2.6e-39 166.4 155 60.0
Haze_17539 Corylus avellana HOM05D001625 ORTHO05D008114 5.9e-39 165.2 94 83.0
Haze_17540 Corylus avellana HOM05D001625 ORTHO05D008114 5.9e-39 165.2 98 78.6
Haze_17548 Corylus avellana HOM05D001625 ORTHO05D008114 5.9e-39 165.2 94 83.0
Haze_17549 Corylus avellana HOM05D001625 ORTHO05D008114 7.7e-39 164.9 98 77.6
unitig_90.g27525 Utricularia gibba HOM05D001625 ORTHO05D008114 2.1e-36 156.8 111 70.3
Potri.002G127500 Populus trichocarpa HOM05D001625 ORTHO05D008114 7.9e-36 154.8 103 74.8
MSTRG.23410 Avicennia marina HOM05D001625 ORTHO05D008114 3.3e-34 149.4 94 76.6
AUR62022424 Chenopodium quinoa HOM05D001625 ORTHO05D008114 5.7e-34 148.7 101 72.3
Psat0s3123g0160 Pisum sativum HOM05D001625 ORTHO05D008114 7.4e-34 148.3 98 72.4
Oeu017165.1 Olea europaea HOM05D001625 ORTHO05D008114 2.8e-33 146.4 143 55.9
AUR62042179 Chenopodium quinoa HOM05D001625 ORTHO05D008114 9.1e-32 141.4 117 63.2
unitig_90.g27526 Utricularia gibba HOM05D001625 ORTHO05D008114 2.6e-18 96.7 58 72.4
RcHm_v2.0_Chr5g0013111 Rosa chinensis HOM05D001625 ORTHO05D008114 3.2e-13 79.7 46 78.3
Os03g0405000 Oryza sativa ssp. japonica HOM05D002028 ORTHO05D002474 5.2e-11 72.4 248 27.0
Zm00001eb019510 Zea mays HOM05D002028 ORTHO05D002474 7.5e-10 68.6 248 26.2
RcHm_v2.0_Chr4g0409851 Rosa chinensis HOM05D001625 ORTHO05D008114 5.4e-08 62.4 33 78.8
CARHR160310 Cardamine hirsuta HOM05D001625 ORTHO05D008114 1.6e-07 60.8 80 45.0
Medtr7g074880 Medicago truncatula HOM05D000089 ORTHO05D000726 5.0e-06 55.8 182 29.1


User provided reference genes

Program Settings