Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 6.7e-193 677.2 340 100.0
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 5.3e-174 614.4 318 98.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.7e-127 459.9 325 76.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 8.3e-127 457.6 321 75.1
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.1e-126 457.2 323 74.6
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.4e-126 456.1 323 75.5
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.2e-125 453.8 323 74.3
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.6e-125 453.4 323 74.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.0e-124 450.7 271 83.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.0e-124 449.1 319 73.4
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 3.9e-124 448.7 323 74.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.2e-122 443.7 312 74.0
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.6e-122 443.4 315 73.0
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.6e-122 443.4 320 73.1
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.8e-122 442.6 324 72.8
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.4e-121 440.3 310 73.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 1.8e-121 439.9 267 83.5
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.8e-121 439.9 274 81.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 4.0e-121 438.7 260 82.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 4.0e-121 438.7 272 80.9
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 8.9e-121 437.6 311 74.9
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.4e-120 435.6 259 83.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 7.6e-120 434.5 311 72.3
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 7.6e-120 434.5 265 81.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 7.6e-120 434.5 253 85.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 9.9e-120 434.1 253 85.0
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.3e-119 433.7 313 74.1
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.2e-119 433.0 313 74.1
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.2e-119 433.0 313 74.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.2e-119 433.0 320 71.9
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 8.3e-119 431.0 312 71.8
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.4e-118 430.3 252 83.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.4e-118 429.5 261 81.6
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 2.4e-118 429.5 313 73.5
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.2e-118 429.1 318 72.3
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 3.2e-118 429.1 253 83.4
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 3.2e-118 429.1 270 79.6
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.2e-118 429.1 288 76.0
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 5.4e-118 428.3 326 69.0
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 7.1e-118 427.9 315 73.3
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 7.1e-118 427.9 271 79.7
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.2e-118 427.6 304 73.7
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.2e-117 427.2 264 80.3
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-117 427.2 288 75.7
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-117 427.2 290 75.5
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.6e-117 426.8 310 71.6
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.7e-117 426.0 252 83.3
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.7e-117 426.0 304 73.7
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.5e-117 425.6 273 78.4
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 6.0e-117 424.9 284 77.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 7.8e-117 424.5 270 78.5
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.0e-116 422.5 292 73.6
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 3.0e-116 422.5 260 80.4
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.9e-116 422.2 267 78.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 8.6e-116 421.0 311 70.4
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.6e-116 421.0 259 80.3
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.1e-115 420.6 253 81.4
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.1e-115 420.6 265 80.0
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.9e-115 419.9 266 78.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.9e-115 419.9 304 71.4
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.3e-115 419.1 253 82.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 3.3e-115 419.1 301 71.1
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.3e-115 418.7 312 69.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.3e-115 418.7 313 69.3
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 5.6e-115 418.3 312 69.6
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 5.6e-115 418.3 255 79.6
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 7.3e-115 417.9 316 69.9
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-114 417.2 312 69.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.1e-114 416.4 301 73.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.8e-114 416.0 301 73.4
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.6e-114 415.6 316 69.3
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.6e-114 415.6 308 70.8
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 4.7e-114 415.2 318 69.5
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 4.7e-114 415.2 310 68.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.7e-114 415.2 252 80.6
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.7e-114 415.2 257 79.4
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 6.2e-114 414.8 276 74.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 6.2e-114 414.8 315 68.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 8.1e-114 414.5 313 69.6
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.4e-113 412.9 302 72.5
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 4.0e-113 412.1 312 68.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.0e-113 412.1 264 76.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 5.2e-113 411.8 313 68.7
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 6.8e-113 411.4 317 68.8
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 8.9e-113 411.0 252 80.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 8.9e-113 411.0 314 69.7
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.0e-112 409.8 252 80.6
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.6e-112 409.5 312 68.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 3.4e-112 409.1 252 80.6
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.8e-112 408.3 317 67.8
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 7.6e-112 407.9 310 68.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 1.7e-111 406.8 303 69.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 2.9e-111 406.0 305 69.8
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 6.4e-111 404.8 252 79.0
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.4e-110 402.9 313 68.7
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.2e-110 402.5 253 78.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 4.2e-110 402.1 315 68.9
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.4e-110 401.7 252 78.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 7.1e-110 401.4 334 65.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 9.3e-110 401.0 313 68.7
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.0e-108 396.0 318 66.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.9e-107 393.3 312 66.0
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 4.3e-107 392.1 262 74.4
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 5.6e-107 391.7 276 73.2
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 1.6e-106 390.2 356 61.0
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 8.1e-106 387.9 265 75.5
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.5e-104 383.6 346 62.1
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 5.8e-104 381.7 286 68.2
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.4e-102 377.1 271 70.5
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.9e-102 376.7 270 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 4.2e-102 375.6 255 71.8
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 7.1e-102 374.8 258 69.0
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 7.9e-101 371.3 318 62.9
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 7.9e-101 371.3 319 60.8
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.3e-100 370.5 278 71.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 4.8e-98 362.1 249 75.5
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 4.0e-97 359.0 256 68.8
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.7e-95 353.6 307 63.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 2.1e-93 346.7 213 80.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 6.0e-93 345.1 298 64.1
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 5.1e-92 342.0 252 70.2
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 9.6e-91 337.8 254 68.1
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.8e-90 335.5 246 70.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.4e-89 334.0 255 67.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.3e-89 332.0 211 76.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 1.3e-87 327.4 248 64.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.1e-86 324.3 292 60.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.2e-86 322.4 209 77.0
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.1e-84 315.5 238 70.2
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 8.7e-84 314.7 246 66.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 4.3e-83 312.4 259 64.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-81 307.8 235 66.8
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.9e-75 287.0 166 83.1
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.9e-73 278.5 166 81.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-61 241.1 150 78.7
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.2e-45 188.0 252 39.7
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.8e-42 176.8 254 38.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.0e-39 168.3 93 86.0
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 7.2e-38 162.2 259 39.0
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 3.6e-37 159.8 218 45.9
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 7.0e-33 145.6 93 79.6
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 6.8e-28 129.0 100 65.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.8e-25 120.9 100 63.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 1.0e-23 115.2 79 74.7
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.0e-23 113.6 218 31.7
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.5e-19 101.3 73 68.5
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 3.4e-19 100.1 64 79.7
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.4e-18 95.9 109 58.7
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.0e-15 87.0 93 48.4
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 4.7e-13 79.7 63 66.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.5e-11 74.7 43 76.7


User provided reference genes

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