Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 3.4e-186 654.8 321 100.0
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.7e-129 466.5 293 76.8
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.3e-126 456.1 297 75.4
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 8.7e-126 454.1 294 75.9
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 4.3e-125 451.8 302 73.8
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 9.6e-125 450.7 293 74.4
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 8.1e-124 447.6 293 72.7
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 3.4e-122 442.2 293 72.7
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 3.4e-122 442.2 293 71.3
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.5e-122 441.8 293 72.4
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 4.5e-122 441.8 293 70.6
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 4.5e-122 441.8 293 72.7
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.2e-121 439.5 292 73.6
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 6.4e-121 438.0 293 72.0
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 6.4e-121 438.0 293 71.7
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 8.4e-121 437.6 293 72.7
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.1e-120 437.2 293 72.4
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.2e-120 435.6 285 74.4
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 3.2e-120 435.6 293 72.0
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 3.2e-120 435.6 292 71.9
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 4.2e-120 435.3 293 73.4
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 4.2e-120 435.3 293 72.0
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 5.5e-120 434.9 294 73.1
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 1.2e-119 433.7 295 72.2
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 1.2e-119 433.7 293 71.3
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 3.5e-119 432.2 293 71.0
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 6.0e-119 431.4 293 72.4
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 7.9e-119 431.0 285 73.7
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 7.9e-119 431.0 293 70.6
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.8e-118 429.9 293 70.0
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 2.3e-118 429.5 297 70.4
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 3.0e-118 429.1 295 70.5
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 3.0e-118 429.1 291 70.8
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 5.1e-118 428.3 293 72.4
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 6.7e-118 427.9 293 68.9
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 2.5e-117 426.0 293 70.0
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 4.3e-117 425.2 293 69.6
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 4.3e-117 425.2 294 71.1
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.8e-116 422.5 293 66.9
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.8e-116 422.5 294 69.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 3.7e-116 422.2 293 68.6
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 6.2e-116 421.4 293 71.0
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 8.2e-116 421.0 293 70.0
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 1.1e-115 420.6 285 71.2
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 1.4e-115 420.2 294 66.0
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 1.4e-115 420.2 290 71.4
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.8e-115 419.9 264 74.6
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 4.0e-115 418.7 285 71.9
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 6.9e-115 417.9 293 66.9
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 6.9e-115 417.9 285 70.2
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 9.0e-115 417.5 293 67.2
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 9.0e-115 417.5 293 66.9
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 1.2e-114 417.2 293 69.6
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 1.2e-114 417.2 280 72.5
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 1.5e-114 416.8 287 70.7
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 1.5e-114 416.8 285 71.2
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 2.0e-114 416.4 295 68.1
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 2.6e-114 416.0 294 67.0
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 4.5e-114 415.2 295 65.4
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 4.5e-114 415.2 286 69.9
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 5.8e-114 414.8 293 66.6
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.0e-113 414.1 293 65.2
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.0e-113 414.1 295 66.8
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.7e-113 413.3 291 69.8
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 3.8e-113 412.1 285 69.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 1.1e-112 410.6 295 68.8
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 3.2e-112 409.1 288 66.0
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 4.2e-112 408.7 296 65.9
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 5.5e-112 408.3 307 63.5
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 5.5e-112 408.3 307 63.5
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 9.3e-112 407.5 295 68.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 1.2e-111 407.1 293 69.3
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 2.1e-111 406.4 288 65.6
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 4.6e-111 405.2 288 65.6
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 7.9e-111 404.4 288 65.6
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 7.9e-111 404.4 294 66.3
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 1.0e-110 404.1 288 65.6
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.0e-110 404.1 293 68.6
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 2.3e-110 402.9 293 68.3
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.3e-110 402.9 268 71.3
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 5.1e-110 401.7 294 68.4
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 1.5e-109 400.2 268 68.7
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.5e-109 399.4 295 64.7
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 1.6e-108 396.7 285 67.7
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.6e-108 396.7 296 64.9
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 2.2e-108 396.4 296 66.6
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 2.8e-108 396.0 296 64.9
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 4.8e-108 395.2 293 66.2
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.4e-107 393.7 296 66.2
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 5.3e-107 391.7 318 63.2
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 2.6e-106 389.4 296 64.2
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.3e-105 387.1 286 64.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-105 387.1 296 64.2
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 5.0e-105 385.2 293 64.8
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 8.5e-105 384.4 296 60.1
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 2.1e-103 379.8 296 62.2
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 7.9e-103 377.9 357 54.6
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 2.0e-101 373.2 245 71.8
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 3.3e-101 372.5 283 63.3
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 9.7e-101 370.9 310 57.1
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.3e-100 370.5 263 66.9
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.2e-100 369.8 295 63.4
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.8e-100 368.6 295 63.1
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 6.9e-99 364.8 302 57.6
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 1.0e-97 360.9 291 60.8
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.3e-97 360.5 309 58.3
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 6.7e-94 348.2 274 62.8
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.1e-93 347.4 293 60.4
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 1.4e-91 340.5 250 62.4
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 2.4e-91 339.7 297 58.9
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 1.5e-90 337.0 252 63.5
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 2.2e-89 333.2 290 59.0
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.1e-88 330.9 284 58.5
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 1.4e-86 323.9 285 55.8
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.4e-86 323.9 286 55.9
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 2.0e-82 310.1 203 68.0
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 6.5e-81 305.1 242 60.3
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 6.8e-78 295.0 209 70.3
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 8.8e-78 294.7 195 70.8
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 4.8e-76 288.9 269 50.6
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 3.5e-74 282.7 259 51.7
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 9.8e-69 264.6 278 43.9
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.3e-68 264.2 162 77.8
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.9e-64 250.4 169 69.2
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 4.7e-63 245.7 162 74.1
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 7.5e-61 238.4 314 44.6
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.8e-59 233.8 141 75.9
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 5.6e-56 222.2 139 74.8
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.6e-56 222.2 158 69.0
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.6e-55 220.7 182 56.6
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 2.8e-55 219.9 227 43.6
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 4.4e-53 212.6 201 55.7
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 1.3e-41 174.5 206 42.7
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.6e-39 167.5 131 58.8
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 2.8e-39 166.8 166 50.0
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 4.7e-39 166.0 205 38.5
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 4.0e-38 162.9 222 38.3
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 5.2e-30 136.0 240 37.5
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-29 134.4 117 53.8
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 2.9e-28 130.2 111 52.3
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 3.8e-28 129.8 113 52.2
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 3.9e-25 119.8 120 52.5
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 8.7e-25 118.6 187 39.0
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.0e-22 109.8 90 57.8
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 4.0e-22 109.8 90 57.8
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 3.8e-20 103.2 253 27.3
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.9e-20 102.8 94 59.6
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.3e-17 94.0 112 47.3
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 8.4e-12 75.5 58 62.1
ECA248G3021 Erigeron canadensis HOM05D004729 ORTHO05D005451 7.9e-10 68.9 44 70.5
Nn1g08661 Nelumbo nucifera HOM05D004729 ORTHO05D005451 3.9e-09 66.6 46 60.9
TPR.G675 Trifolium pratense HOM05D004729 ORTHO05D005451 8.1e-07 58.9 44 63.6


User provided reference genes

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