Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C232T17 Lonicera japonica HOM05D001144 ORTHO05D025763 1.8e-27 125.2 64 100.0
Lj2C492G1 Lonicera japonica HOM05D001144 ORTHO05D002615 4.4e-13 77.4 58 67.2
MD02G1119700 Malus domestica HOM05D001144 ORTHO05D002615 4.9e-12 73.9 55 63.6
Actinidia17386 Actinidia chinensis HOM05D001144 ORTHO05D002615 2.4e-11 71.6 58 56.9
Ciclev10025889m.g Citrus clementina HOM05D001144 ORTHO05D002615 2.4e-11 71.6 55 61.8
QL06p052713 Quercus lobata HOM05D001144 ORTHO05D002615 2.4e-11 71.6 55 63.6
QL06p053867 Quercus lobata HOM05D001144 ORTHO05D002615 2.4e-11 71.6 55 63.6
Manes.02G112500 Manihot esculenta HOM05D001144 ORTHO05D002615 4.1e-11 70.9 55 58.2
Prupe.7G179400 Prunus persica HOM05D001144 ORTHO05D002615 9.2e-11 69.7 55 61.8
Actinidia22911 Actinidia chinensis HOM05D001144 ORTHO05D002615 1.2e-10 69.3 58 55.2
MD15G1233500 Malus domestica HOM05D001144 ORTHO05D002615 1.2e-10 69.3 55 60.0
TWI53G1376 Tripterygium wilfordii HOM05D001144 ORTHO05D002615 1.6e-10 68.9 57 61.4
Lsat_1_v5_gn_8_120341 Lactuca sativa HOM05D001144 ORTHO05D002615 2.0e-10 68.6 55 61.8
Cfa007053 Carpinus fangiana HOM05D001144 ORTHO05D002615 2.7e-10 68.2 55 56.4
Duzib147G0227 Durio zibethinus HOM05D001144 ORTHO05D002615 2.7e-10 68.2 55 61.8
Nitab4.5_0003828g0020 Nicotiana tabacum HOM05D001144 ORTHO05D002615 2.7e-10 68.2 58 60.3
Sabra05G0082300 Salix brachista HOM05D001144 ORTHO05D002615 2.7e-10 68.2 55 65.5
TWI73G1028 Tripterygium wilfordii HOM05D001144 ORTHO05D002615 2.7e-10 68.2 57 61.4
Aqoxy5G01041 Aquilegia oxysepala HOM05D001144 ORTHO05D002615 3.5e-10 67.8 62 56.5
Rhsim05G0048000 Rhododendron simsii HOM05D001144 ORTHO05D002615 3.5e-10 67.8 55 61.8
Thecc.01G007300 Theobroma cacao HOM05D001144 ORTHO05D002615 3.5e-10 67.8 55 63.6
CSS0023740 Camellia sinensis var. sinensis HOM05D001144 ORTHO05D002615 4.6e-10 67.4 59 57.6
COL.COLO4_22535 Corchorus olitorius HOM05D001144 ORTHO05D002615 4.6e-10 67.4 55 60.0
Haze_03681 Corylus avellana HOM05D001144 ORTHO05D002615 4.6e-10 67.4 55 56.4
Manes.01G153600 Manihot esculenta HOM05D001144 ORTHO05D002615 4.6e-10 67.4 55 56.4
Potri.007G064000 Populus trichocarpa HOM05D001144 ORTHO05D002615 4.6e-10 67.4 55 63.6
Sabra07G0051900 Salix brachista HOM05D001144 ORTHO05D002615 4.6e-10 67.4 55 65.5
Actinidia32014 Actinidia chinensis HOM05D001144 ORTHO05D002615 6.0e-10 67.0 55 61.8
Carub.0007s0465 Capsella rubella HOM05D001144 ORTHO05D002615 6.0e-10 67.0 55 63.6
PSO210G5029 Papaver somniferum HOM05D001144 ORTHO05D002615 6.0e-10 67.0 68 52.9
Nn8g40485 Nelumbo nucifera HOM05D001144 ORTHO05D002615 7.8e-10 66.6 63 54.0
TAR625G0969 Trochodendron aralioides HOM05D001144 ORTHO05D002615 7.8e-10 66.6 62 62.9
Gohir.D12G057800 Gossypium hirsutum HOM05D001144 ORTHO05D002615 1.3e-09 65.9 55 58.2
Gorai.008G061000 Gossypium raimondii HOM05D001144 ORTHO05D002615 1.3e-09 65.9 55 58.2
Nitab4.5_0001700g0080 Nicotiana tabacum HOM05D001144 ORTHO05D002615 1.3e-09 65.9 55 56.4
TAR628G0169 Trochodendron aralioides HOM05D001144 ORTHO05D002615 1.3e-09 65.9 63 52.4
Hma1.2p1_1639F.1_g295020 Hydrangea macrophylla HOM05D001144 ORTHO05D002615 1.7e-09 65.5 55 56.4
Peaxi162Scf00362g00238 Petunia axillaris HOM05D001144 ORTHO05D002615 1.7e-09 65.5 57 63.2
RcHm_v2.0_Chr2g0097601 Rosa chinensis HOM05D001144 ORTHO05D002615 1.7e-09 65.5 55 58.2
CsaV3_6G047780 Cucumis sativus L. HOM05D001144 ORTHO05D002615 2.3e-09 65.1 64 53.1
Dinv41884 Davidia involucrata HOM05D001144 ORTHO05D002615 2.3e-09 65.1 63 55.6
MD05G1133600 Malus domestica HOM05D001144 ORTHO05D002615 2.3e-09 65.1 56 60.7
Solyc10g074500.2 Solanum lycopersicum HOM05D001144 ORTHO05D002615 2.3e-09 65.1 56 60.7
BcaB03g12421 Brassica carinata HOM05D001144 ORTHO05D002615 3.0e-09 64.7 55 61.8
BcaC01g00509 Brassica carinata HOM05D001144 ORTHO05D002615 3.0e-09 64.7 55 61.8
C03p80800 Brassica napus HOM05D001144 ORTHO05D002615 3.0e-09 64.7 55 61.8
BolC3t20335H Brassica oleracea HOM05D001144 ORTHO05D002615 3.0e-09 64.7 55 61.8
Gohir.A12G058000 Gossypium hirsutum HOM05D001144 ORTHO05D002615 3.0e-09 64.7 55 56.4
Potri.005G099600 Populus trichocarpa HOM05D001144 ORTHO05D002615 3.0e-09 64.7 56 62.5
A08p21790 Brassica napus HOM05D001144 ORTHO05D002615 3.9e-09 64.3 55 60.0
BraA08t34132Z Brassica rapa HOM05D001144 ORTHO05D002615 3.9e-09 64.3 55 60.0
Lalb_Chr05g0211941 Lupinus albus HOM05D001144 ORTHO05D002615 3.9e-09 64.3 53 58.5
Sed0004464 Sechium edule HOM05D001144 ORTHO05D002615 3.9e-09 64.3 65 56.9
Sopen10g027000 Solanum pennellii HOM05D001144 ORTHO05D002615 3.9e-09 64.3 55 60.0
PGSC0003DMG400016826 Solanum tuberosum HOM05D001144 ORTHO05D002615 3.9e-09 64.3 56 60.7
Sed0003213 Sechium edule HOM05D001144 ORTHO05D002615 5.0e-09 63.9 63 54.0
SGA_v2.0_scaffold98G29295 Striga asiatica HOM05D001144 ORTHO05D002615 5.0e-09 63.9 55 56.4
MSTRG.27621 Avicennia marina HOM05D001144 ORTHO05D002615 6.6e-09 63.5 55 54.5
EL10Ac6g13374 Beta vulgaris HOM05D001144 ORTHO05D002615 6.6e-09 63.5 63 57.1
ClCG01G020820 Citrullus lanatus HOM05D001144 ORTHO05D002615 6.6e-09 63.5 64 51.6
MELO3C007968.2 Cucumis melo HOM05D001144 ORTHO05D002615 6.6e-09 63.5 64 51.6
Duzib187G0035 Durio zibethinus HOM05D001144 ORTHO05D002615 6.6e-09 63.5 55 58.2
MBI19_g03290_MAGBIO Magnolia biondii HOM05D001144 ORTHO05D002615 6.6e-09 63.5 61 57.4
MD10G1138600 Malus domestica HOM05D001144 ORTHO05D002615 6.6e-09 63.5 56 58.9
Nn7g37472 Nelumbo nucifera HOM05D001144 ORTHO05D002615 6.6e-09 63.5 61 54.1
AUR62037855 Chenopodium quinoa HOM05D001144 ORTHO05D002615 8.6e-09 63.2 63 52.4
Thhalv10025508m.g Eutrema salsugineum HOM05D001144 ORTHO05D002615 8.6e-09 63.2 55 63.6
Rhsim08G0028200 Rhododendron simsii HOM05D001144 ORTHO05D002615 8.6e-09 63.2 55 61.8
Sp7g33420 Schrenkiella parvula HOM05D001144 ORTHO05D002615 8.6e-09 63.2 55 60.0
Zm00001eb246080 Zea mays HOM05D001144 ORTHO05D002615 8.6e-09 63.2 58 56.9
Aa31LG6G12610 Aethionema arabicum HOM05D001144 ORTHO05D002615 1.1e-08 62.8 55 60.0
Migut.N01351 Erythranthe guttata HOM05D001144 ORTHO05D002615 1.1e-08 62.8 55 52.7
Glyma.11G084000 Glycine max HOM05D001144 ORTHO05D002615 1.1e-08 62.8 52 59.6
HanXRQChr14g0459041 Helianthus annuus HOM05D001144 ORTHO05D002615 1.1e-08 62.8 55 61.8
Zm00001eb183760 Zea mays HOM05D001144 ORTHO05D002615 1.1e-08 62.8 57 56.1
AUR62041095 Chenopodium quinoa HOM05D001144 ORTHO05D002615 1.5e-08 62.4 61 52.5
Lj2g0014905 Lotus japonicus HOM05D001144 ORTHO05D002615 1.5e-08 62.4 53 54.7
Peaxi162Scf00205g00010 Petunia axillaris HOM05D001144 ORTHO05D002615 1.5e-08 62.4 57 54.4
vmacro18454 Vaccinium macrocarpon HOM05D001144 ORTHO05D002615 1.5e-08 62.4 55 60.0
AT4G35650 Arabidopsis thaliana HOM05D001144 ORTHO05D002615 1.9e-08 62.0 55 61.8
PSO170G0761 Papaver somniferum HOM05D001144 ORTHO05D002615 1.9e-08 62.0 71 47.9
THA.LOC104807435 Tarenaya hassleriana HOM05D001144 ORTHO05D002615 1.9e-08 62.0 56 60.7
Atru.chr3.954 Acer truncatum HOM05D001144 ORTHO05D002615 2.5e-08 61.6 55 58.2
Sc08g0002410 Simmondsia chinensis HOM05D001144 ORTHO05D002615 2.5e-08 61.6 55 60.0
unitig_749.g13983 Utricularia gibba HOM05D001144 ORTHO05D002615 2.5e-08 61.6 55 56.4
Ah.02g128990 Amaranthus hybridus HOM05D001144 ORTHO05D002615 3.3e-08 61.2 58 58.6
PGR142G2266 Punica granatum HOM05D001144 ORTHO05D002615 3.3e-08 61.2 62 54.8
C01p03640 Brassica napus HOM05D001144 ORTHO05D002615 4.3e-08 60.8 55 54.5
BolC1t00355H Brassica oleracea HOM05D001144 ORTHO05D002615 4.3e-08 60.8 55 54.5
CDE04G1240 Ceratophyllum demersum HOM05D001144 ORTHO05D002615 4.3e-08 60.8 55 54.5
Eucgr.I01510 Eucalyptus grandis HOM05D001144 ORTHO05D002615 4.3e-08 60.8 57 59.6
Eucgr.I02232 Eucalyptus grandis HOM05D001144 ORTHO05D002615 4.3e-08 60.8 55 56.4
FAN19G3007 Fragaria x ananassa HOM05D001144 ORTHO05D002615 4.3e-08 60.8 55 56.4
Lalb_Chr09g0334291 Lupinus albus HOM05D001144 ORTHO05D002615 4.3e-08 60.8 58 58.6
Psat2g130000 Pisum sativum HOM05D001144 ORTHO05D002615 4.3e-08 60.8 53 54.7
Ah.03g134030 Amaranthus hybridus HOM05D001144 ORTHO05D002615 5.6e-08 60.5 60 53.3
MSTRG.16952 Avicennia marina HOM05D001144 ORTHO05D002615 5.6e-08 60.5 55 54.5
CiPaw.05G088800 Carya illinoinensis HOM05D001144 ORTHO05D002615 5.6e-08 60.5 55 56.4
Thhalv10025418m.g Eutrema salsugineum HOM05D001144 ORTHO05D002615 5.6e-08 60.5 55 54.5
Potri.004G204300 Populus trichocarpa HOM05D001144 ORTHO05D002615 5.6e-08 60.5 55 56.4
Sp7g33040 Schrenkiella parvula HOM05D001144 ORTHO05D002615 5.6e-08 60.5 55 54.5
Aa31LG2G14800 Aethionema arabicum HOM05D001144 ORTHO05D002615 7.3e-08 60.1 55 52.7
ATR0820G253 Amborella trichopoda HOM05D001144 ORTHO05D002615 9.5e-08 59.7 48 58.3
CSS0035237 Camellia sinensis var. sinensis HOM05D001144 ORTHO05D002615 9.5e-08 59.7 55 58.2
Ca_22413_v3 Cicer arietinum L. HOM05D001144 ORTHO05D002615 9.5e-08 59.7 55 52.7
FvH4_2g16520 Fragaria vesca HOM05D001144 ORTHO05D002615 9.5e-08 59.7 56 55.4
FAN15G1400 Fragaria x ananassa HOM05D001144 ORTHO05D002615 9.5e-08 59.7 56 55.4
FAN24G1819 Fragaria x ananassa HOM05D001144 ORTHO05D002615 9.5e-08 59.7 56 55.4
FAN27G0468 Fragaria x ananassa HOM05D001144 ORTHO05D002615 9.5e-08 59.7 56 55.4
Rhsim10G0199600 Rhododendron simsii HOM05D001144 ORTHO05D002615 9.5e-08 59.7 55 56.4
Rhsim10G0201100 Rhododendron simsii HOM05D001144 ORTHO05D002615 9.5e-08 59.7 55 56.4
vmacro20521 Vaccinium macrocarpon HOM05D001144 ORTHO05D002615 9.5e-08 59.7 55 56.4
CiPaw.07G004500 Carya illinoinensis HOM05D001144 ORTHO05D002615 1.2e-07 59.3 64 50.0
FAN23G0640 Fragaria x ananassa HOM05D001144 ORTHO05D002615 1.2e-07 59.3 55 56.4
Oeu021966.1 Olea europaea HOM05D001144 ORTHO05D002615 1.2e-07 59.3 55 58.2
RcHm_v2.0_Chr6g0280541 Rosa chinensis HOM05D001144 ORTHO05D002615 1.2e-07 59.3 56 55.4
VMungo1215G1302 Vigna mungo HOM05D001144 ORTHO05D002615 1.2e-07 59.3 52 55.8
CANSAT25G0851 Cannabis sativa HOM05D001144 ORTHO05D002615 1.6e-07 58.9 57 56.1
DCAR_015669 Daucus carota HOM05D001144 ORTHO05D002615 1.6e-07 58.9 54 53.7
Oeu020640.4 Olea europaea HOM05D001144 ORTHO05D002615 1.6e-07 58.9 55 54.5
Potri.009G165200 Populus trichocarpa HOM05D001144 ORTHO05D002615 1.6e-07 58.9 55 54.5
Oeu028608.1 Olea europaea HOM05D001144 ORTHO05D002615 2.1e-07 58.5 55 52.7
Phvul.003G268900 Phaseolus vulgaris HOM05D001144 ORTHO05D002615 2.1e-07 58.5 55 54.5
SalBow1G5148 Salvia bowleyana HOM05D001144 ORTHO05D002615 2.1e-07 58.5 55 52.7
SalBow5G0515 Salvia bowleyana HOM05D001144 ORTHO05D002615 2.1e-07 58.5 55 52.7
SalBow5G1023 Salvia bowleyana HOM05D001144 ORTHO05D002615 2.1e-07 58.5 55 52.7
AL7G15910 Arabidopsis lyrata HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 52.7
AT4G35260 Arabidopsis thaliana HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 52.7
Carub.0007s0504 Capsella rubella HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 52.7
CARHR243580 Cardamine hirsuta HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 52.7
Ciclev10028714m.g Citrus clementina HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 50.9
Haze_02051 Corylus avellana HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 56.4
FAN28G2530 Fragaria x ananassa HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 54.5
Sabra09G0129200 Salix brachista HOM05D001144 ORTHO05D002615 2.8e-07 58.2 58 55.2
THA.LOC104807399 Tarenaya hassleriana HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 54.5
THA.LOC104819681 Tarenaya hassleriana HOM05D001144 ORTHO05D002615 2.8e-07 58.2 55 52.7
Zm00001eb424940 Zea mays HOM05D001144 ORTHO05D002615 2.8e-07 58.2 60 51.7
Glyma.02G042100 Glycine max HOM05D001144 ORTHO05D002615 3.6e-07 57.8 55 54.5
PSO675G8372 Papaver somniferum HOM05D001144 ORTHO05D002615 3.6e-07 57.8 60 51.7
VMungo0251G0974 Vigna mungo HOM05D001144 ORTHO05D002615 3.6e-07 57.8 55 56.4
Ca_24961_v3 Cicer arietinum L. HOM05D001144 ORTHO05D002615 4.7e-07 57.4 54 53.7
DCAR_006290 Daucus carota HOM05D001144 ORTHO05D002615 4.7e-07 57.4 54 55.6
DCAR_026589 Daucus carota HOM05D001144 ORTHO05D002615 4.7e-07 57.4 54 55.6
Phvul.002G114600 Phaseolus vulgaris HOM05D001144 ORTHO05D002615 4.7e-07 57.4 52 53.8
Aqoxy6G01716 Aquilegia oxysepala HOM05D001144 ORTHO05D002615 6.2e-07 57.0 57 49.1
Cpa.g.sc20.195 Carica papaya HOM05D001144 ORTHO05D002615 6.2e-07 57.0 52 53.8
Sc16g0001720 Simmondsia chinensis HOM05D001144 ORTHO05D025763 6.2e-07 57.0 55 54.5
FvH4_1g10550 Fragaria vesca HOM05D001144 ORTHO05D002615 8.1e-07 56.6 55 52.7
PGR119G0828 Punica granatum HOM05D001144 ORTHO05D002615 8.1e-07 56.6 61 59.0
Glyma.16G118900 Glycine max HOM05D001144 ORTHO05D002615 1.1e-06 56.2 55 52.7
Os04g0479200 Oryza sativa ssp. japonica HOM05D001144 ORTHO05D002615 1.1e-06 56.2 56 50.0
arahy.Tifrunner.gnm1.ann1.45JGXG Arachis hypogaea HOM05D001144 ORTHO05D002615 1.4e-06 55.8 54 51.9
arahy.Tifrunner.gnm1.ann1.AIK0XD Arachis hypogaea HOM05D001144 ORTHO05D002615 1.4e-06 55.8 54 50.0
arahy.Tifrunner.gnm1.ann1.SA47EU Arachis hypogaea HOM05D001144 ORTHO05D002615 1.4e-06 55.8 54 51.9
BcaC01g00828 Brassica carinata HOM05D001144 ORTHO05D002615 1.4e-06 55.8 55 50.9
A01p03300 Brassica napus HOM05D001144 ORTHO05D002615 1.4e-06 55.8 55 49.1
BraA01t00315Z Brassica rapa HOM05D001144 ORTHO05D002615 1.4e-06 55.8 55 49.1
A08p16230 Brassica napus HOM05D001144 ORTHO05D002615 1.8e-06 55.5 55 50.9
BraA08t33593Z Brassica rapa HOM05D001144 ORTHO05D002615 1.8e-06 55.5 55 50.9
Duzib052G1130 Durio zibethinus HOM05D001144 ORTHO05D002615 1.8e-06 55.5 54 50.0
Lalb_Chr09g0321301 Lupinus albus HOM05D001144 ORTHO05D002615 1.8e-06 55.5 53 52.8
Os02g0595500 Oryza sativa ssp. japonica HOM05D001144 ORTHO05D002615 1.8e-06 55.5 62 46.8
QL11p053958 Quercus lobata HOM05D001144 ORTHO05D002615 1.8e-06 55.5 56 55.4
arahy.Tifrunner.gnm1.ann1.V10QWI Arachis hypogaea HOM05D001144 ORTHO05D002615 2.3e-06 55.1 31 74.2
arahy.Tifrunner.gnm1.ann1.WT9AHN Arachis hypogaea HOM05D001144 ORTHO05D002615 2.3e-06 55.1 31 74.2
Cfa005328 Carpinus fangiana HOM05D001144 ORTHO05D002615 2.3e-06 55.1 55 54.5
MELO3C013505.2 Cucumis melo HOM05D001144 ORTHO05D002615 2.3e-06 55.1 51 54.9
Medtr8g074030 Medicago truncatula HOM05D001144 ORTHO05D002615 2.3e-06 55.1 53 52.8
Hund19709 Selenicereus undatus HOM05D001144 ORTHO05D002615 2.3e-06 55.1 55 56.4
SGA_v2.0_scaffold80G25820 Striga asiatica HOM05D001144 ORTHO05D002615 2.3e-06 55.1 55 47.3
Thecc.02G045300 Theobroma cacao HOM05D001144 ORTHO05D002615 2.3e-06 55.1 54 50.0
arahy.Tifrunner.gnm1.ann1.VBRE55 Arachis hypogaea HOM05D001144 ORTHO05D002615 3.1e-06 54.7 54 48.1
C03p84920 Brassica napus HOM05D001144 ORTHO05D002615 3.1e-06 54.7 55 50.9
BolC3t20784H Brassica oleracea HOM05D001144 ORTHO05D002615 3.1e-06 54.7 55 50.9
Glyma.14G001900 Glycine max HOM05D001144 ORTHO05D002615 3.1e-06 54.7 27 85.2
Lj4g0020981 Lotus japonicus HOM05D001144 ORTHO05D002615 3.1e-06 54.7 53 49.1
VMungo0647G0821 Vigna mungo HOM05D001144 ORTHO05D002615 3.1e-06 54.7 27 85.2
ClCG02G010350 Citrullus lanatus HOM05D001144 ORTHO05D002615 4.0e-06 54.3 53 52.8
COL.COLO4_17936 Corchorus olitorius HOM05D001144 ORTHO05D002615 4.0e-06 54.3 54 50.0
FAN26G0946 Fragaria x ananassa HOM05D001144 ORTHO05D002615 4.0e-06 54.3 55 54.5
Carub.0003s3106 Capsella rubella HOM05D001144 ORTHO05D002615 5.2e-06 53.9 55 47.3
AL3G49980 Arabidopsis lyrata HOM05D001144 ORTHO05D002615 6.8e-06 53.5 55 47.3
Duzib248G0538 Durio zibethinus HOM05D001144 ORTHO05D002615 6.8e-06 53.5 54 48.1
Sed0010302 Sechium edule HOM05D001144 ORTHO05D002615 6.8e-06 53.5 54 51.9
AT2G17130 Arabidopsis thaliana HOM05D001144 ORTHO05D002615 8.9e-06 53.1 55 49.1
Phvul.008G291500 Phaseolus vulgaris HOM05D001144 ORTHO05D002615 8.9e-06 53.1 27 81.5


User provided reference genes

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