Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 9.0e-177 623.6 350 100.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 8.3e-114 414.5 373 62.7
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 7.0e-113 411.4 373 63.5
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.3e-111 406.4 373 62.7
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.6e-111 404.8 373 62.7
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.5e-110 403.7 373 62.2
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 1.2e-109 400.6 373 62.7
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.8e-109 399.4 373 60.9
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 4.0e-108 395.6 374 62.8
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.6e-107 392.9 373 61.4
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 4.4e-107 392.1 373 62.2
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 4.4e-107 392.1 373 61.4
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.3e-106 390.6 373 60.3
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.3e-106 390.6 373 60.6
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.7e-106 390.2 373 60.9
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 4.9e-106 388.7 373 60.1
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 4.9e-106 388.7 372 60.8
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 8.3e-106 387.9 373 60.9
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.2e-105 386.0 331 66.8
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 5.4e-105 385.2 373 60.6
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 7.1e-105 384.8 363 61.4
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.2e-104 384.0 373 61.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-104 383.6 373 60.3
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-104 382.1 373 60.1
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.0e-104 381.7 373 60.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 7.8e-104 381.3 365 60.0
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 7.8e-104 381.3 373 59.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.7e-103 380.2 373 58.7
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.3e-103 379.8 363 60.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.3e-103 379.8 373 59.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 3.9e-103 379.0 373 58.4
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.9e-103 379.0 373 58.4
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 5.1e-103 378.6 373 57.6
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.6e-103 378.3 373 59.5
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 6.6e-103 378.3 373 59.2
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 5.6e-102 375.2 375 58.9
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 9.5e-102 374.4 369 59.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.1e-101 373.2 332 62.7
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.6e-101 372.5 331 62.8
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.7e-101 372.1 373 59.0
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 8.1e-101 371.3 373 58.4
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.1e-100 370.9 373 58.4
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.4e-100 369.8 371 59.0
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.4e-100 369.8 373 58.2
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 8.9e-100 367.9 336 63.1
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.2e-99 367.5 373 57.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.5e-99 367.1 332 63.0
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.0e-99 366.7 365 59.7
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.4e-99 365.5 373 57.6
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 4.4e-99 365.5 332 61.7
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 9.9e-99 364.4 331 61.0
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.3e-98 364.0 336 62.2
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.7e-98 363.6 369 58.0
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.9e-97 360.1 363 57.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.4e-97 359.8 373 57.1
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.4e-97 358.6 373 56.8
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 9.2e-97 357.8 373 55.5
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.6e-96 357.1 331 61.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.0e-95 354.4 373 57.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.7e-95 353.6 370 57.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 6.6e-95 351.7 373 56.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 2.5e-94 349.7 373 54.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.6e-94 348.6 285 66.3
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.6e-93 347.1 373 55.8
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.1e-93 346.7 372 55.4
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 3.6e-93 345.9 422 51.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.1e-92 344.4 373 55.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 6.9e-92 341.7 339 58.7
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.4e-91 339.3 373 54.2
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.4e-91 339.3 369 54.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.8e-91 338.6 373 55.5
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 9.9e-91 337.8 373 54.7
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 9.9e-91 337.8 339 58.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.7e-90 337.0 334 58.4
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.2e-90 336.7 373 54.4
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 5.4e-89 332.0 365 54.5
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 6.0e-88 328.6 336 58.0
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 7.8e-88 328.2 374 54.8
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.1e-86 324.3 286 61.9
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.9e-86 323.6 373 53.9
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 5.6e-86 322.0 373 53.1
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.8e-85 319.7 373 53.6
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 3.6e-85 319.3 368 52.2
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 5.3e-84 315.5 249 66.7
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.5e-83 313.9 286 60.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.4e-81 307.4 323 57.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 7.1e-81 305.1 373 50.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.1e-80 303.5 373 51.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.7e-80 303.1 321 57.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.3e-79 300.8 373 50.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 3.0e-79 299.7 374 52.4
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.1e-78 297.7 373 48.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.4e-76 290.0 336 53.0
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.4e-76 290.0 336 53.0
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.4e-76 290.0 338 50.6
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 9.0e-76 288.1 373 48.8
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.2e-75 287.7 331 52.6
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.2e-75 287.7 373 48.0
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.6e-75 286.6 331 53.5
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 9.9e-75 284.6 331 52.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 3.8e-74 282.7 331 52.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 2.5e-73 280.0 330 49.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.2e-73 279.3 333 50.8
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.6e-72 277.3 329 50.8
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.1e-72 276.9 321 54.2
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.7e-72 276.6 368 47.8
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 6.0e-72 275.4 373 49.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.0e-71 274.6 335 50.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.3e-70 269.2 334 50.0
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.6e-70 268.9 338 47.6
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.1e-69 266.9 333 49.8
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.2e-69 265.0 316 53.8
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.5e-67 260.8 273 57.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 3.4e-67 259.6 322 51.9
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.5e-67 259.2 331 48.9
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 2.2e-66 256.9 245 59.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 8.4e-66 255.0 354 47.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.8e-63 247.3 327 45.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.1e-62 244.6 349 46.1
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.5e-62 244.2 330 45.2
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.5e-62 243.4 331 46.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 5.7e-62 242.3 331 48.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 5.7e-62 242.3 332 46.7
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.7e-62 241.5 315 51.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-61 241.1 331 48.0
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.3e-61 241.1 331 48.0
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.6e-61 240.7 336 46.1
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.2e-61 240.4 319 50.8
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.8e-61 240.0 320 49.7
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 4.8e-61 239.2 331 47.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.3e-58 231.1 221 58.8
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 3.8e-58 229.6 314 49.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-56 223.8 331 45.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 7.9e-56 221.9 373 41.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-54 218.0 326 44.5
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 7.4e-54 215.3 310 48.1
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.7e-54 214.9 329 43.2
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.3e-53 214.5 230 55.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.3e-53 214.5 330 43.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.4e-52 210.3 321 46.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.3e-52 209.1 350 41.7
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 6.9e-52 208.8 331 42.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-51 207.6 234 55.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 1.5e-51 207.6 309 46.3
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-51 207.6 328 45.4
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.5e-51 206.1 324 42.0
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 2.9e-50 203.4 314 43.3
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.5e-49 200.3 337 42.7
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.7e-48 196.1 335 41.8
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 3.9e-47 193.0 336 38.4
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 3.3e-46 189.9 237 51.5
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 9.7e-46 188.3 244 48.4
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.7e-45 187.6 316 39.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 7.0e-44 182.2 169 57.4
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.0e-43 180.6 225 51.6
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 1.2e-40 171.4 332 35.5
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 6.7e-39 165.6 329 36.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.5e-38 164.5 166 62.0
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.0e-38 164.1 311 37.9
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 3.5e-35 153.3 177 53.1
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 3.1e-28 130.2 202 45.0
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 7.0e-28 129.0 180 47.8
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.2e-25 120.2 324 34.3
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 6.1e-24 115.9 312 36.5
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.2e-19 101.7 329 36.2
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.7e-19 99.0 332 31.9
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 8.6e-18 95.5 256 34.0
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 8.6e-18 95.5 256 34.0
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 3.6e-16 90.1 202 38.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.9e-10 70.1 329 28.6
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 1.2e-06 58.5 128 37.5


User provided reference genes

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