Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.1e-84 316.6 169 100.0
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 2.4e-66 255.8 170 80.6
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 7.0e-66 254.2 169 77.5
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 1.2e-65 253.4 169 78.1
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 3.5e-65 251.9 161 79.5
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 1.3e-64 250.0 169 78.7
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-64 249.6 170 77.1
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.9e-64 248.8 169 77.5
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 6.5e-64 247.7 169 76.3
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 6.5e-64 247.7 169 75.7
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.1e-63 246.9 170 76.5
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.9e-63 246.1 169 76.3
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 2.5e-63 245.7 169 76.9
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.5e-63 245.7 170 75.9
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 5.5e-63 244.6 169 75.1
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 5.5e-63 244.6 169 75.1
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 5.5e-63 244.6 169 74.6
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 9.4e-63 243.8 169 74.6
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 9.4e-63 243.8 169 73.4
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 1.2e-62 243.4 169 75.7
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-62 243.4 170 75.9
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 1.6e-62 243.0 169 74.6
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 2.1e-62 242.7 169 74.6
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.1e-62 242.7 169 74.6
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.7e-62 242.3 169 75.7
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 8.0e-62 240.7 169 74.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.0e-61 240.4 171 74.3
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.0e-61 240.4 169 71.0
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.4e-61 240.0 169 74.0
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 1.4e-61 240.0 169 74.6
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.4e-61 240.0 169 74.0
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.8e-61 239.6 169 71.6
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 2.3e-61 239.2 169 76.9
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 2.3e-61 239.2 171 74.3
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 2.3e-61 239.2 169 74.6
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 3.0e-61 238.8 171 73.7
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 3.9e-61 238.4 169 74.6
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 3.9e-61 238.4 169 74.0
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 5.2e-61 238.0 169 72.8
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 8.8e-61 237.3 173 77.5
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 1.1e-60 236.9 169 72.2
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 2.0e-60 236.1 169 73.4
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 2.0e-60 236.1 169 74.0
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 2.0e-60 236.1 169 72.2
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.0e-60 236.1 166 74.1
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 3.3e-60 235.3 170 71.8
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 5.7e-60 234.6 169 71.6
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 7.4e-60 234.2 169 72.2
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 9.7e-60 233.8 169 72.2
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.3e-59 233.4 169 71.6
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.7e-59 233.0 170 71.2
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 71.0
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 69.8
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.8e-59 232.3 170 71.8
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 72.2
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 6.3e-59 231.1 169 69.2
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 8.2e-59 230.7 166 72.9
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 1.1e-58 230.3 170 73.5
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 1.4e-58 229.9 169 70.4
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.8e-58 229.6 170 72.4
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 1.8e-58 229.6 171 70.8
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 1.8e-58 229.6 170 70.0
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.8e-58 229.6 164 73.2
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 1.8e-58 229.6 172 70.3
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 2.4e-58 229.2 169 70.4
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 3.1e-58 228.8 169 70.4
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 4.1e-58 228.4 170 72.4
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 5.3e-58 228.0 169 69.8
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 1.6e-57 226.5 170 71.2
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 1.6e-57 226.5 170 71.8
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.0e-57 226.1 170 72.4
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.6e-57 225.7 169 69.2
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 3.5e-57 225.3 171 68.4
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.0e-56 223.8 169 68.0
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 2.2e-56 222.6 169 68.0
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 2.2e-56 222.6 169 68.0
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 2.2e-56 222.6 169 68.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 2.2e-56 222.6 171 68.4
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 3.8e-56 221.9 169 70.4
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 5.0e-56 221.5 169 67.5
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 5.0e-56 221.5 171 67.8
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 6.5e-56 221.1 169 67.5
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 6.5e-56 221.1 171 67.3
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 6.5e-56 221.1 171 67.8
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 8.5e-56 220.7 169 66.9
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 1.1e-55 220.3 170 68.2
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 66.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 1.5e-55 219.9 169 66.3
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 1.5e-55 219.9 169 66.3
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-55 219.5 171 66.1
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-55 219.5 171 66.1
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 1.9e-55 219.5 171 66.1
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 2.5e-55 219.2 166 69.3
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 3.2e-55 218.8 169 66.3
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 5.5e-55 218.0 169 66.3
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 5.5e-55 218.0 169 66.3
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 5.5e-55 218.0 169 66.3
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 5.5e-55 218.0 170 68.2
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 7.2e-55 217.6 169 68.6
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 9.4e-55 217.2 165 67.9
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 9.4e-55 217.2 169 65.7
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 66.5
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 1.2e-54 216.9 166 66.9
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 1.2e-54 216.9 170 66.5
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.2e-54 216.9 158 70.9
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 1.6e-54 216.5 170 67.6
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 2.1e-54 216.1 172 68.0
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 2.7e-54 215.7 169 67.5
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 3.6e-54 215.3 169 66.3
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 8.0e-54 214.2 155 73.5
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.3e-53 212.6 170 64.7
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 67.8
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 2.3e-53 212.6 171 67.8
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 4.0e-53 211.8 172 64.5
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 4.0e-53 211.8 172 65.1
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 5.2e-53 211.5 170 65.9
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 6.7e-53 211.1 171 67.8
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.0e-52 209.5 172 64.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 2.0e-52 209.5 169 64.5
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.6e-52 209.1 166 65.1
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.6e-52 209.1 170 62.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 2.6e-52 209.1 170 63.5
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 2.6e-52 209.1 171 63.7
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.7e-52 208.0 161 65.8
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 5.7e-52 208.0 171 67.3
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 7.5e-52 207.6 164 69.5
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 9.7e-52 207.2 168 67.3
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 1.3e-51 206.8 171 63.2
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.3e-51 206.8 171 63.2
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 1.3e-51 206.8 171 63.2
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 1.7e-51 206.5 171 63.2
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.7e-51 206.5 169 65.7
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.7e-51 206.5 171 66.1
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 4.8e-51 204.9 170 67.1
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 6.3e-51 204.5 169 64.5
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 8.3e-51 204.1 170 66.5
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.5e-47 191.4 171 57.9
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 1.0e-45 187.2 102 84.3
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 1.2e-44 183.7 146 67.1
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 2.6e-44 182.6 100 87.0
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.2e-43 179.5 102 80.4
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 5.9e-41 171.4 173 57.2
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 6.6e-40 167.9 171 56.1
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.1e-39 167.2 170 58.8
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 2.5e-39 166.0 100 75.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 3.6e-38 162.2 165 53.9
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 6.1e-38 161.4 145 63.4
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 2.8e-35 152.5 170 48.8
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 5.4e-34 148.3 218 45.4
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.2e-34 147.5 176 48.3
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 3.9e-32 142.1 175 45.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 5.0e-32 141.7 176 47.7
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 6.1e-30 134.8 175 43.4
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 3.4e-28 129.0 139 51.1
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.8e-28 128.3 70 82.9
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.7e-27 126.7 70 81.4
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 4.9e-27 125.2 132 48.5
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 6.4e-27 124.8 173 45.7
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 2.4e-26 122.9 177 50.8
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 5.0e-24 115.2 170 41.8
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 3.6e-22 109.0 166 42.2
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.2e-20 104.0 67 76.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.9e-19 98.6 81 63.0
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 5.1e-16 88.6 44 90.9
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.4e-10 69.7 69 63.8


User provided reference genes

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