Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C169G8 Lonicera japonica HOM05D007847 ORTHO05D009946 2.2e-125 452.2 214 100.0
Dinv26974 Davidia involucrata HOM05D007847 ORTHO05D009946 5.5e-76 288.1 299 52.5
Actinidia11949 Actinidia chinensis HOM05D007847 ORTHO05D009946 2.3e-74 282.7 288 53.5
CSS0008963 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 2.3e-74 282.7 288 54.2
CSS0006637 Camellia sinensis var. sinensis HOM05D007847 ORTHO05D009946 8.8e-74 280.8 288 53.8
Nitab4.5_0005210g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 1.1e-73 280.4 225 60.0
Nitab4.5_0002639g0020 Nicotiana tabacum HOM05D007847 ORTHO05D009946 2.6e-73 279.3 195 66.2
Manes.13G107200 Manihot esculenta HOM05D007847 ORTHO05D009946 1.3e-72 276.9 289 50.9
TAR381G1308 Trochodendron aralioides HOM05D007847 ORTHO05D009946 2.2e-72 276.2 296 49.3
CiPaw.08G148900 Carya illinoinensis HOM05D007847 ORTHO05D009946 8.2e-72 274.2 289 51.6
Sopen03g007680 Solanum pennellii HOM05D007847 ORTHO05D009946 1.1e-71 273.9 288 51.4
QL06p038286 Quercus lobata HOM05D007847 ORTHO05D009946 5.3e-71 271.6 288 51.0
ECA238G4198 Erigeron canadensis HOM05D007847 ORTHO05D009946 5.9e-70 268.1 219 60.3
Solyc03g043870.3 Solanum lycopersicum HOM05D007847 ORTHO05D009946 5.9e-70 268.1 285 51.2
Cc07_g07550 Coffea canephora HOM05D007847 ORTHO05D009946 7.7e-70 267.7 296 47.3
HanXRQChr14g0447671 Helianthus annuus HOM05D007847 ORTHO05D009946 2.2e-69 266.2 240 56.7
Eucgr.F02827 Eucalyptus grandis HOM05D007847 ORTHO05D009946 6.5e-69 264.6 221 58.4
Nn5g30695 Nelumbo nucifera HOM05D007847 ORTHO05D009946 8.5e-69 264.2 294 46.9
Prupe.6G213700 Prunus persica HOM05D007847 ORTHO05D009946 2.5e-68 262.7 192 66.1
Cfa006792 Carpinus fangiana HOM05D007847 ORTHO05D009946 4.2e-68 261.9 218 58.7
Haze_03966 Corylus avellana HOM05D007847 ORTHO05D009946 1.6e-67 260.0 297 48.1
Ciclev10026132m.g Citrus clementina HOM05D007847 ORTHO05D009946 1.8e-66 256.5 235 54.5
Sabra07G0006500 Salix brachista HOM05D007847 ORTHO05D009946 1.8e-66 256.5 218 56.4
MD02G1192700 Malus domestica HOM05D007847 ORTHO05D009946 2.3e-66 256.1 218 57.3
Potri.007G008300 Populus trichocarpa HOM05D007847 ORTHO05D009946 3.0e-66 255.8 218 56.0
Peaxi162Scf00118g01311 Petunia axillaris HOM05D007847 ORTHO05D009946 8.8e-66 254.2 219 56.6
RcHm_v2.0_Chr2g0109231 Rosa chinensis HOM05D007847 ORTHO05D009946 1.5e-65 253.4 288 46.9
DCAR_010781 Daucus carota HOM05D007847 ORTHO05D009946 2.0e-65 253.1 240 52.9
Gohir.A02G148500 Gossypium hirsutum HOM05D007847 ORTHO05D009946 2.0e-65 253.1 263 48.7
Atru.chr3.1082 Acer truncatum HOM05D007847 ORTHO05D009946 4.4e-65 251.9 239 53.6
CANSAT01G1865 Cannabis sativa HOM05D007847 ORTHO05D009946 1.7e-64 250.0 218 57.3
Thecc.01G078900 Theobroma cacao HOM05D007847 ORTHO05D009946 2.2e-64 249.6 279 48.4
FAN19G2742 Fragaria x ananassa HOM05D007847 ORTHO05D009946 1.8e-63 246.5 289 46.0
A06p32610 Brassica napus HOM05D007847 ORTHO05D009946 4.1e-63 245.4 288 46.5
Carub.0008s2664 Capsella rubella HOM05D007847 ORTHO05D009946 4.1e-63 245.4 299 45.5
FvH4_1g18540 Fragaria vesca HOM05D007847 ORTHO05D009946 4.1e-63 245.4 287 46.0
BraA06t26189Z Brassica rapa HOM05D007847 ORTHO05D009946 5.3e-63 245.0 288 46.5
FAN26G2270 Fragaria x ananassa HOM05D007847 ORTHO05D009946 7.0e-63 244.6 287 46.0
TWI77G0524 Tripterygium wilfordii HOM05D007847 ORTHO05D009946 7.0e-63 244.6 287 47.4
Gorai.003G033500 Gossypium raimondii HOM05D007847 ORTHO05D009946 1.6e-62 243.4 287 46.0
C03p59920 Brassica napus HOM05D007847 ORTHO05D009946 2.0e-62 243.0 287 46.3
BolC3t18257H Brassica oleracea HOM05D007847 ORTHO05D009946 2.0e-62 243.0 287 46.3
Gohir.D03G032000 Gossypium hirsutum HOM05D007847 ORTHO05D009946 2.0e-62 243.0 284 46.1
AL8G43460 Arabidopsis lyrata HOM05D007847 ORTHO05D009946 4.5e-62 241.9 296 45.9
FAN23G2885 Fragaria x ananassa HOM05D007847 ORTHO05D009946 4.5e-62 241.9 296 44.9
Aqoxy6G02972 Aquilegia oxysepala HOM05D007847 ORTHO05D009946 2.9e-61 239.2 237 51.1
Thhalv10004606m.g Eutrema salsugineum HOM05D007847 ORTHO05D009946 6.5e-61 238.0 288 45.1
THA.LOC104819277 Tarenaya hassleriana HOM05D007847 ORTHO05D009946 6.5e-61 238.0 295 45.4
FAN28G0215 Fragaria x ananassa HOM05D007847 ORTHO05D009946 8.5e-61 237.7 299 43.8
MBI16_g08505_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 8.5e-61 237.7 233 51.1
Migut.H00314 Erythranthe guttata HOM05D007847 ORTHO05D009946 1.1e-60 237.3 233 51.9
PSO541G2530 Papaver somniferum HOM05D007847 ORTHO05D009946 1.2e-59 233.8 216 54.2
Duzib264G0083 Durio zibethinus HOM05D007847 ORTHO05D009946 4.7e-59 231.9 283 43.5
PSO675G2957 Papaver somniferum HOM05D007847 ORTHO05D009946 3.4e-57 225.7 216 53.2
AT5G65740 Arabidopsis thaliana HOM05D007847 ORTHO05D009946 7.5e-57 224.6 216 51.9
Zm00001eb215660 Zea mays HOM05D007847 ORTHO05D009946 1.1e-55 220.7 217 50.7
Os03g0726900 Oryza sativa ssp. japonica HOM05D007847 ORTHO05D009946 2.7e-54 216.1 216 50.0
Sc22g0002130 Simmondsia chinensis HOM05D007847 ORTHO05D009946 3.5e-54 215.7 240 46.2
PGR102G2702 Punica granatum HOM05D007847 ORTHO05D009946 4.5e-54 215.3 288 39.6
BcaC01g02838 Brassica carinata HOM05D007847 ORTHO05D009946 2.5e-52 209.5 264 45.1
Oeu013362.2 Olea europaea HOM05D007847 ORTHO05D009946 1.6e-51 206.8 194 54.1
PGSC0003DMG400017101 Solanum tuberosum HOM05D007847 ORTHO05D009946 8.8e-50 201.1 228 46.5
ATR0629G045 Amborella trichopoda HOM05D007847 ORTHO05D009946 1.2e-49 200.7 211 47.4
CARHR279740 Cardamine hirsuta HOM05D007847 ORTHO05D009946 6.3e-48 194.9 199 50.3
SGA_v2.0_scaffold121G33081 Striga asiatica HOM05D007847 ORTHO05D009946 1.5e-44 183.7 236 44.5
CAN.G82.24 Capsicum annuum HOM05D007847 ORTHO05D009946 1.4e-42 177.2 111 69.4
SEGI_26913 Sequoiadendron giganteum HOM05D007847 ORTHO05D009946 1.4e-42 177.2 213 42.3
COL.COLO4_11640 Corchorus olitorius HOM05D007847 ORTHO05D009946 9.8e-41 171.0 266 38.3
AagrBONN_evm.TU.Sc2ySwM_362.720 Anthoceros agrestis HOM05D007847 ORTHO05D009946 6.6e-37 158.3 237 37.1
MD15G1303200 Malus domestica HOM05D007847 ORTHO05D009946 8.6e-37 157.9 104 71.2
Pp3c23_15090 Physcomitrium patens HOM05D007847 ORTHO05D009946 5.6e-36 155.2 211 34.6
Mapoly0084s0053 Marchantia polymorpha HOM05D007847 ORTHO05D009946 3.4e-33 146.0 216 34.7
Cpa.g.sc129.54 Carica papaya HOM05D007847 ORTHO05D009946 9.8e-33 144.4 200 41.5
MSTRG.2798 Avicennia marina HOM05D007847 ORTHO05D009946 8.1e-27 124.8 151 46.4
Actinidia36408 Actinidia chinensis HOM05D007847 ORTHO05D009946 2.3e-26 123.2 140 48.6
Sp2g28840 Schrenkiella parvula HOM05D007847 ORTHO05D009946 2.2e-24 116.7 63 77.8
HPP92_003710 Vanilla planifolia HOM05D007847 ORTHO05D009946 2.4e-23 113.2 153 42.5
Lsat_1_v5_gn_2_80401 Lactuca sativa HOM05D007847 ORTHO05D009946 8.6e-21 104.8 151 41.1
MD15G1303100 Malus domestica HOM05D007847 ORTHO05D009946 2.6e-17 93.2 136 40.4
CDE02G3555 Ceratophyllum demersum HOM05D007847 ORTHO05D009946 7.6e-17 91.7 66 65.2
MBI01_g18879_MAGBIO Magnolia biondii HOM05D007847 ORTHO05D009946 3.6e-11 72.8 44 68.2
Cre03.g204801 Chlamydomonas reinhardtii HOM05D007847 ORTHO05D009946 4.7e-11 72.4 93 38.7
TAR375G0706 Trochodendron aralioides HOM05D006116 ORTHO05D009946 4.4e-09 65.9 45 66.7
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 5.8e-09 65.5 126 31.7


User provided reference genes

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