Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A900G15 Lonicera japonica HOM05D022195 ORTHO05D013569 1.4e-173 612.8 303 100.0
Lj4C905G2 Lonicera japonica HOM05D022195 ORTHO05D013569 8.9e-88 327.8 272 66.9
Lj4A285G24 Lonicera japonica HOM05D000448 ORTHO05D000291 2.9e-46 189.9 307 41.0
Lj4A282G37 Lonicera japonica HOM05D000448 ORTHO05D013569 9.3e-45 184.9 301 40.9
Lj4A283G8 Lonicera japonica HOM05D000448 ORTHO05D000291 1.2e-44 184.5 307 40.4
Lj4C282T3 Lonicera japonica HOM05D000448 ORTHO05D013569 6.4e-38 162.2 182 49.5
Lj4A901G16 Lonicera japonica HOM05D021923 ORTHO05D013569 4.0e-32 142.9 99 72.7
Lj4C282T7 Lonicera japonica HOM05D026011 ORTHO05D013569 1.2e-31 141.4 182 47.3
Lj4A284G30 Lonicera japonica HOM05D026011 ORTHO05D013569 1.1e-24 118.2 104 57.7
Lj4C282T2 Lonicera japonica HOM05D021923 ORTHO05D013569 8.8e-19 98.6 122 45.1
AUR62043844 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.7e-17 94.4 261 28.0
AUR62009255 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.8e-16 90.9 252 28.6
AUR62043848 Chenopodium quinoa HOM05D000448 ORTHO05D000291 5.3e-16 89.4 313 27.2
Lj4C905G1 Lonicera japonica HOM05D022195 ORTHO05D013569 6.9e-16 89.0 183 36.6
AUR62043870 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.0e-14 85.1 321 24.9
Lj4A903G13 Lonicera japonica HOM05D000448 ORTHO05D000291 1.0e-14 85.1 233 29.2
Lj4A285G26 Lonicera japonica HOM05D021923 ORTHO05D013569 1.3e-14 84.7 114 43.9
Lj4A450T12 Lonicera japonica HOM05D000448 ORTHO05D000291 1.3e-14 84.7 234 29.9
AUR62043845 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.7e-14 84.3 311 26.4
Lj4C901T3 Lonicera japonica HOM05D022195 ORTHO05D013569 1.7e-14 84.3 130 40.0
Lj4A284T36 Lonicera japonica HOM05D021923 ORTHO05D013569 6.5e-14 82.4 59 67.8
Lj4A286T20 Lonicera japonica HOM05D000448 ORTHO05D000291 1.1e-13 81.6 277 27.1
AUR62009251 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.4e-13 81.3 325 26.2
Lj4C904T0 Lonicera japonica HOM05D000448 ORTHO05D000291 1.4e-13 81.3 327 25.7
PSO170G3744 Papaver somniferum HOM05D000448 ORTHO05D000291 2.5e-13 80.5 355 24.8
Lj4A282T38 Lonicera japonica HOM05D021923 ORTHO05D013569 3.2e-13 80.1 59 66.1
PSO302G0297 Papaver somniferum HOM05D000448 ORTHO05D000291 9.4e-13 78.6 307 25.4
CiPaw.03G111800 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.2e-12 78.2 292 25.0
Oeu047502.1 Olea europaea HOM05D000448 ORTHO05D000291 1.6e-12 77.8 311 26.0
CsaV3_2G016990 Cucumis sativus L. HOM05D000448 ORTHO05D000291 1.0e-11 75.1 331 24.5
Lj4C286T2 Lonicera japonica HOM05D000448 ORTHO05D000291 1.4e-11 74.7 268 26.5
Lj4A285G23 Lonicera japonica HOM05D000448 ORTHO05D000291 1.8e-11 74.3 264 26.5
AUR62043768 Chenopodium quinoa HOM05D000448 ORTHO05D000313 3.9e-11 73.2 237 27.0
TAR479G0001 Trochodendron aralioides HOM05D000448 ORTHO05D000291 3.9e-11 73.2 310 22.9
Ah.16g105930 Amaranthus hybridus HOM05D000448 ORTHO05D000291 1.5e-10 71.2 270 27.0
arahy.Tifrunner.gnm1.ann1.FECP0X Arachis hypogaea HOM05D000448 ORTHO05D000291 1.5e-10 71.2 266 26.3
Sc06g0006700 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.0e-10 70.9 205 31.2
AUR62031816 Chenopodium quinoa HOM05D000448 ORTHO05D000291 2.6e-10 70.5 255 25.5
Nn1g09256 Nelumbo nucifera HOM05D000480 ORTHO05D000313 2.6e-10 70.5 279 24.0
arahy.Tifrunner.gnm1.ann1.80FDQG Arachis hypogaea HOM05D000480 ORTHO05D000313 4.4e-10 69.7 291 24.4
Migut.C00513 Erythranthe guttata HOM05D000448 ORTHO05D000291 4.4e-10 69.7 325 22.8
MSTRG.12044 Avicennia marina HOM05D000448 ORTHO05D000291 5.7e-10 69.3 253 27.3
Thecc.01G400000 Theobroma cacao HOM05D000480 ORTHO05D000313 7.4e-10 68.9 266 22.2
CiPaw.03G112400 Carya illinoinensis HOM05D000448 ORTHO05D000291 9.7e-10 68.6 283 26.9
C03p16890 Brassica napus HOM05D000454 ORTHO05D002637 1.3e-09 68.2 267 26.2
MELO3C013066.2 Cucumis melo HOM05D000448 ORTHO05D000291 1.7e-09 67.8 250 26.0
C03p16880 Brassica napus HOM05D000454 ORTHO05D002637 2.2e-09 67.4 240 26.7
PSO210G1616 Papaver somniferum HOM05D000448 ORTHO05D000291 2.2e-09 67.4 230 28.3
Psat6g065480 Pisum sativum HOM05D000448 ORTHO05D000291 2.8e-09 67.0 309 25.6
BraA03t10742Z Brassica rapa HOM05D000454 ORTHO05D002637 3.7e-09 66.6 234 25.6
CSS0031680 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 3.7e-09 66.6 339 20.6
AUR62008891 Chenopodium quinoa HOM05D000448 ORTHO05D000291 3.7e-09 66.6 253 24.9
HanXRQChr12g0358821 Helianthus annuus HOM05D000448 ORTHO05D000291 4.8e-09 66.2 273 24.2
BcaC01g06320 Brassica carinata HOM05D000454 ORTHO05D002637 6.3e-09 65.9 240 26.2
arahy.Tifrunner.gnm1.ann1.9NB33V Arachis hypogaea HOM05D000448 ORTHO05D000291 8.2e-09 65.5 250 22.4
Actinidia03310 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.1e-08 65.1 330 23.3
MELO3C025814.2 Cucumis melo HOM05D000448 ORTHO05D000291 1.1e-08 65.1 253 25.3
MELO3C025837.2 Cucumis melo HOM05D000448 ORTHO05D000291 1.1e-08 65.1 247 27.9
MSTRG.12046 Avicennia marina HOM05D000448 ORTHO05D000291 1.4e-08 64.7 259 27.8
RcHm_v2.0_Chr6g0311481 Rosa chinensis HOM05D000448 ORTHO05D000291 1.4e-08 64.7 252 27.4
A03p14470 Brassica napus HOM05D000454 ORTHO05D002637 1.8e-08 64.3 236 25.4
Gohir.A03G004000 Gossypium hirsutum HOM05D000480 ORTHO05D000313 1.8e-08 64.3 328 21.6
A03p14460 Brassica napus HOM05D000454 ORTHO05D002637 2.4e-08 63.9 266 25.2
Migut.I00414 Erythranthe guttata HOM05D000448 ORTHO05D000291 2.4e-08 63.9 263 26.6
Eucgr.L00452 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.4e-08 63.9 193 25.4
Eucgr.L00453 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.4e-08 63.9 248 26.6
AUR62009254 Chenopodium quinoa HOM05D000480 ORTHO05D000313 3.1e-08 63.5 99 35.4
CSS0023638 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 4.1e-08 63.2 301 24.9
AUR62044581 Chenopodium quinoa HOM05D000480 ORTHO05D000313 4.1e-08 63.2 107 30.8
AUR62044582 Chenopodium quinoa HOM05D000480 ORTHO05D000313 4.1e-08 63.2 107 30.8
Migut.A00098 Erythranthe guttata HOM05D000448 ORTHO05D000291 4.1e-08 63.2 246 26.0
Medtr7g099580 Medicago truncatula HOM05D000448 ORTHO05D000313 4.1e-08 63.2 241 27.0
PSO170G4483 Papaver somniferum HOM05D000448 ORTHO05D000291 5.3e-08 62.8 232 28.0
AUR62043586 Chenopodium quinoa HOM05D000448 ORTHO05D000291 7.0e-08 62.4 175 32.6
AUR62043857 Chenopodium quinoa HOM05D000448 ORTHO05D000291 7.0e-08 62.4 175 32.6
Migut.L01539 Erythranthe guttata HOM05D000448 ORTHO05D000291 7.0e-08 62.4 333 23.7
Nn1g04194 Nelumbo nucifera HOM05D000448 ORTHO05D000291 7.0e-08 62.4 330 23.9
AT5G54700 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 9.1e-08 62.0 255 27.5
ECA234G4019 Erigeron canadensis HOM05D000448 ORTHO05D000291 9.1e-08 62.0 108 33.3
Eucgr.C03371 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.1e-08 62.0 125 28.8
Eucgr.C03401 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.1e-08 62.0 247 23.9
Eucgr.L00448 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.1e-08 62.0 184 25.5
Peaxi162Scf00565g00065 Petunia axillaris HOM05D000448 ORTHO05D000291 9.1e-08 62.0 234 28.6
AUR62043869 Chenopodium quinoa HOM05D000448 ORTHO05D000291 1.2e-07 61.6 320 25.0
PGR044G0504 Punica granatum HOM05D000448 ORTHO05D000291 1.2e-07 61.6 242 26.0
BcaC03g14172 Brassica carinata HOM05D000480 ORTHO05D000313 1.5e-07 61.2 284 26.1
C02p14460 Brassica napus HOM05D000480 ORTHO05D000313 1.5e-07 61.2 284 26.1
BolC2t07571H Brassica oleracea HOM05D000480 ORTHO05D000313 1.5e-07 61.2 284 26.1
CiPaw.11G073200 Carya illinoinensis HOM05D000480 ORTHO05D000313 1.5e-07 61.2 264 22.7
Dinv25166 Davidia involucrata HOM05D000480 ORTHO05D000313 1.5e-07 61.2 248 25.4
Eucgr.C03607 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.5e-07 61.2 118 32.2
Eucgr.C03917 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.5e-07 61.2 106 36.8
Hma1.2p1_0196F.1_g085070 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.5e-07 61.2 104 36.5
PGR044G0759 Punica granatum HOM05D000448 ORTHO05D000291 1.5e-07 61.2 240 26.2
Sc09g0010050 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.5e-07 61.2 227 26.9
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 2.0e-07 60.8 287 22.0
Cfa010029 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.0e-07 60.8 280 25.0
CiPaw.11G073300 Carya illinoinensis HOM05D000480 ORTHO05D000313 2.0e-07 60.8 264 20.8
Cc06_g19830 Coffea canephora HOM05D000448 ORTHO05D000291 2.0e-07 60.8 194 30.9
Migut.A00096 Erythranthe guttata HOM05D000448 ORTHO05D000291 2.0e-07 60.8 255 26.7
FAN20G0495 Fragaria x ananassa HOM05D000448 ORTHO05D000291 2.0e-07 60.8 254 26.8
THA.LOC104805939 Tarenaya hassleriana HOM05D000454 ORTHO05D007581 2.0e-07 60.8 303 22.1
CANSAT64G1402 Cannabis sativa HOM05D000264 ORTHO05D000152 2.6e-07 60.5 271 24.4
Eucgr.C03374 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.6e-07 60.5 173 26.6
Medtr8g040930 Medicago truncatula HOM05D000480 ORTHO05D000313 2.6e-07 60.5 313 20.4
Medtr8g041240 Medicago truncatula HOM05D000480 ORTHO05D000313 2.6e-07 60.5 313 20.4
Rhsim05G0013100 Rhododendron simsii HOM05D000448 ORTHO05D000291 2.6e-07 60.5 255 25.1
Sc09g0010080 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.6e-07 60.5 232 27.2
BcaB05g22330 Brassica carinata HOM05D000480 ORTHO05D000313 3.4e-07 60.1 293 25.3
BcaC06g33526 Brassica carinata HOM05D000480 ORTHO05D000313 3.4e-07 60.1 288 26.0
BcaNung00129 Brassica carinata HOM05D000480 ORTHO05D000313 3.4e-07 60.1 269 25.3
CSS0018902 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 3.4e-07 60.1 210 29.5
ECA234G0709 Erigeron canadensis HOM05D000448 ORTHO05D000291 3.4e-07 60.1 267 25.5
TAR626G0633 Trochodendron aralioides HOM05D000448 ORTHO05D000291 3.4e-07 60.1 186 26.3
Actinidia29316 Actinidia chinensis HOM05D000448 ORTHO05D000291 4.5e-07 59.7 256 27.3
Carub.0001s3214 Capsella rubella HOM05D000454 ORTHO05D002637 4.5e-07 59.7 300 23.0
Ciclev10008188m.g Citrus clementina HOM05D000448 ORTHO05D000291 4.5e-07 59.7 140 32.1
Duzib168G1606 Durio zibethinus HOM05D000448 ORTHO05D000291 4.5e-07 59.7 258 26.0
Eucgr.C03399 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.5e-07 59.7 330 21.5
Eucgr.L00439 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.5e-07 59.7 113 29.2
FvH4_2g31340 Fragaria vesca HOM05D000448 ORTHO05D000291 4.5e-07 59.7 254 27.6
Actinidia03546 Actinidia chinensis HOM05D000448 ORTHO05D000291 5.9e-07 59.3 255 26.7
arahy.Tifrunner.gnm1.ann1.71GJM4 Arachis hypogaea HOM05D000480 ORTHO05D000313 5.9e-07 59.3 276 23.9
BolC3t14102H Brassica oleracea HOM05D000454 ORTHO05D002637 5.9e-07 59.3 234 24.8
CANSAT78G0315 Cannabis sativa HOM05D000264 ORTHO05D000152 5.9e-07 59.3 274 22.6
Medtr7g021090 Medicago truncatula HOM05D000480 ORTHO05D000313 5.9e-07 59.3 283 22.3
QL01p009420 Quercus lobata HOM05D000480 ORTHO05D000313 5.9e-07 59.3 259 22.8
Sabra18G0103600 Salix brachista HOM05D000480 ORTHO05D000313 5.9e-07 59.3 172 30.2
Sabra18G0104100 Salix brachista HOM05D000480 ORTHO05D000313 5.9e-07 59.3 172 30.2
Medtr8g068990 Medicago truncatula HOM05D000480 ORTHO05D000313 7.7e-07 58.9 257 24.1
Prupe.1G407000 Prunus persica HOM05D000448 ORTHO05D000291 7.7e-07 58.9 259 27.8
GSVIVG01015136001 Vitis vinifera HOM05D000448 ORTHO05D000291 7.7e-07 58.9 205 25.4
AL1G21080 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 1.0e-06 58.5 287 22.0
A04p18170 Brassica napus HOM05D000454 ORTHO05D002637 1.0e-06 58.5 293 20.1
Cpa.g.sc277.5 Carica papaya HOM05D000448 ORTHO05D000291 1.0e-06 58.5 342 22.2
Manes.08G063800 Manihot esculenta HOM05D000480 ORTHO05D000313 1.0e-06 58.5 312 25.3
Actinidia25704 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.3e-06 58.2 326 22.4
AT5G54710 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.3e-06 58.2 251 23.9
COL.COLO4_21112 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.3e-06 58.2 269 25.7
Eucgr.C03604 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.3e-06 58.2 254 25.2
FAN15G3761 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.3e-06 58.2 254 26.8
Lj7C682G5 Lonicera japonica HOM05D000544 ORTHO05D000291 1.3e-06 58.2 248 26.2
PSO717G0037 Papaver somniferum HOM05D009007 ORTHO05D000313 1.3e-06 58.2 278 21.6
Sabra18G0103100 Salix brachista HOM05D000480 ORTHO05D000313 1.3e-06 58.2 172 29.7
BcaNung04662 Brassica carinata HOM05D000480 ORTHO05D000313 1.7e-06 57.8 266 25.9
Eucgr.L00451 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.7e-06 57.8 309 21.0
Oeu034188.1 Olea europaea HOM05D000448 ORTHO05D000291 1.7e-06 57.8 251 27.9
PSO717G0076 Papaver somniferum HOM05D009007 ORTHO05D000291 1.7e-06 57.8 238 28.6
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 2.2e-06 57.4 287 21.3
Cfa012319 Carpinus fangiana HOM05D000480 ORTHO05D000313 2.2e-06 57.4 256 24.2
Lj4C285G7 Lonicera japonica HOM05D026011 ORTHO05D013569 2.2e-06 57.4 48 62.5
Atru.chr2.622 Acer truncatum HOM05D000448 ORTHO05D000291 2.9e-06 57.0 275 24.7
CSS0050228 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.9e-06 57.0 188 22.9
Cc06_g19850 Coffea canephora HOM05D000448 ORTHO05D000291 2.9e-06 57.0 193 26.4
FAN27G1920 Fragaria x ananassa HOM05D000448 ORTHO05D000291 2.9e-06 57.0 254 26.0
MBI07_g04976_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 2.9e-06 57.0 193 27.5
PGR044G1980 Punica granatum HOM05D000448 ORTHO05D000291 2.9e-06 57.0 253 28.5
Ca_26580_v3 Cicer arietinum L. HOM05D000480 ORTHO05D000313 3.8e-06 56.6 263 21.7
Eucgr.C03581 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.8e-06 56.6 105 33.3
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 3.8e-06 56.6 255 24.7
GSVIVG01015139001 Vitis vinifera HOM05D000448 ORTHO05D000291 3.8e-06 56.6 68 42.6
CARHR255620 Cardamine hirsuta HOM05D000480 ORTHO05D000313 5.0e-06 56.2 284 23.6
CiPaw.14G019200 Carya illinoinensis HOM05D000480 ORTHO05D000313 5.0e-06 56.2 260 21.9
Sopen08g017860 Solanum pennellii HOM05D000448 ORTHO05D000291 5.0e-06 56.2 255 24.7
TAR058G0001 Trochodendron aralioides HOM05D000480 ORTHO05D000313 5.0e-06 56.2 252 23.8
TAR501G0001 Trochodendron aralioides HOM05D000448 ORTHO05D000291 5.0e-06 56.2 122 32.0
Actinidia25224 Actinidia chinensis HOM05D000448 ORTHO05D000291 6.5e-06 55.8 165 31.5
EL10Ac2g04012 Beta vulgaris HOM05D000448 ORTHO05D000291 6.5e-06 55.8 208 27.4
Hma1.2p1_0231F.1_g097550 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 6.5e-06 55.8 108 36.1
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 6.5e-06 55.8 246 26.8
PSO832G2867 Papaver somniferum HOM05D009007 ORTHO05D000291 6.5e-06 55.8 284 24.3
Thecc.09G059700 Theobroma cacao HOM05D000448 ORTHO05D000291 6.5e-06 55.8 266 25.9
AT2G24600 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 8.5e-06 55.5 306 20.3
Cpa.g.sc277.6 Carica papaya HOM05D000448 ORTHO05D000291 8.5e-06 55.5 347 21.6
AUR62044748 Chenopodium quinoa HOM05D000448 ORTHO05D000291 8.5e-06 55.5 218 27.5
CsaV3_3G043600 Cucumis sativus L. HOM05D000448 ORTHO05D000291 8.5e-06 55.5 165 29.1
Gorai.004G192600 Gossypium raimondii HOM05D000480 ORTHO05D000313 8.5e-06 55.5 335 22.7
PSO717G0105 Papaver somniferum HOM05D009007 ORTHO05D000291 8.5e-06 55.5 250 25.2
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 8.5e-06 55.5 116 29.3


User provided reference genes

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