Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 0.0e+00 1675.2 902 100.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.5e-255 885.9 940 56.9
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.8e-254 882.5 940 56.7
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.4e-250 869.4 940 57.1
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.2e-244 850.5 900 55.9
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 9.3e-242 840.9 983 54.3
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.0e-225 785.0 948 50.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.0e-225 785.0 947 52.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 6.7e-224 781.6 947 53.2
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.9e-223 780.0 1017 49.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 2.5e-223 779.6 945 53.4
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 5.3e-221 771.9 949 52.4
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 5.3e-221 771.9 937 52.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 5.3e-221 771.9 941 53.7
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 7.6e-220 768.1 944 51.3
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 8.5e-219 764.6 948 51.8
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.9e-218 763.5 949 51.6
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.6e-217 759.2 941 51.1
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 6.1e-217 758.4 947 50.6
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 3.3e-215 752.7 949 49.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 5.3e-213 745.3 956 51.2
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 3.2e-210 736.1 944 51.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.6e-209 732.3 946 50.7
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-208 729.6 935 53.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.8e-208 728.0 946 50.2
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-207 726.9 946 50.3
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 9.7e-207 724.5 922 51.3
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.2e-206 723.4 945 50.6
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.1e-205 719.5 921 50.9
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.5e-204 717.2 955 48.6
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.6e-204 716.5 1007 46.8
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.9e-203 713.0 919 50.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.1e-202 711.1 911 51.8
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 7.2e-202 708.4 950 50.5
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.6e-201 707.2 943 48.4
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 7.9e-201 704.9 970 48.6
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.9e-200 702.6 921 50.3
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.2e-200 702.2 942 48.9
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.8e-198 695.7 943 48.0
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 3.1e-197 693.0 656 61.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.2e-196 691.0 945 48.7
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.6e-196 689.9 934 48.4
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 3.5e-196 689.5 943 48.8
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 5.0e-195 685.6 939 48.2
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.1e-193 680.2 909 50.1
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 3.6e-193 679.5 940 47.8
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.7e-193 679.1 919 49.3
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.7e-190 670.6 974 45.9
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.8e-190 669.8 937 46.4
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.8e-190 669.1 904 51.0
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.3e-190 668.7 859 48.4
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.2e-190 668.3 866 48.4
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 7.0e-189 665.2 948 46.3
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.7e-188 663.3 909 50.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-188 662.5 866 48.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-187 660.2 773 53.6
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.9e-187 659.8 953 47.5
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.5e-186 657.5 874 48.4
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.5e-186 656.8 972 46.5
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.7e-185 652.5 955 47.2
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 4.7e-185 652.5 926 48.7
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.3e-184 650.2 904 51.5
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.2e-183 647.9 888 49.1
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.6e-183 646.7 924 48.8
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.7e-183 645.6 951 47.1
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 9.8e-183 644.8 892 45.5
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.2e-182 643.7 942 44.7
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.8e-182 643.3 924 45.3
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 2.0e-180 637.1 943 43.6
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 7.7e-180 635.2 918 49.3
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.7e-180 635.2 888 48.5
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.6e-177 627.5 892 46.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 3.6e-177 626.3 939 45.2
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-175 620.9 909 47.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 4.4e-175 619.4 943 44.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 8.3e-174 615.1 935 44.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 1.8e-173 614.0 896 46.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 5.4e-173 612.5 955 43.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.7e-172 610.1 889 45.1
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.9e-171 606.7 922 44.0
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.1e-170 604.7 960 44.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.5e-170 604.4 908 48.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 7.3e-170 602.1 928 44.5
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 8.0e-169 598.6 1009 42.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.3e-168 597.0 892 45.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 2.3e-168 597.0 911 45.0
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.0e-168 596.7 920 45.9
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 5.2e-168 595.9 913 44.2
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 6.4e-166 589.0 947 44.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.4e-165 585.9 926 46.5
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.0e-165 585.5 927 45.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 3.5e-164 583.2 945 42.8
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.3e-163 580.5 901 44.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.5e-162 577.8 894 44.6
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.8e-160 570.9 890 45.1
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.2e-159 568.2 967 44.1
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.8e-159 565.8 877 44.7
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.9e-158 563.5 926 43.4
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.2e-157 560.1 940 42.9
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.6e-155 552.4 915 42.1
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.6e-151 540.4 883 45.2
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-150 538.1 652 50.3
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.1e-149 535.0 860 47.0
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.3e-147 527.3 683 51.4
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.2e-145 521.5 890 41.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 2.1e-145 520.8 932 41.7
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 1.8e-144 517.7 854 43.6
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.8e-144 517.7 891 42.8
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 8.9e-144 515.4 853 43.4
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.5e-143 514.6 624 52.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 4.9e-142 509.6 915 43.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 1.1e-141 508.4 892 40.9
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.4e-141 507.3 899 41.9
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 7.1e-141 505.8 922 39.7
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 3.9e-139 500.0 940 39.9
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.6e-137 494.6 922 39.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.8e-134 483.4 919 40.5
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.9e-133 481.1 938 40.9
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.5e-132 476.9 921 41.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 4.6e-132 476.5 908 42.4
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.0e-132 476.1 681 46.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.3e-130 470.3 908 41.6
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 5.6e-130 469.5 910 41.3
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-129 468.4 929 41.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 4.8e-129 466.5 939 40.4
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 4.8e-129 466.5 939 40.9
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.1e-129 465.7 922 39.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 5.3e-128 463.0 930 40.5
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 5.3e-128 463.0 930 40.5
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 9.0e-128 462.2 897 42.3
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 6.4e-126 456.1 871 39.6
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 4.2e-125 453.4 669 46.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.7e-123 446.0 831 38.9
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.5e-114 418.3 506 50.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.5e-114 418.3 847 42.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 2.5e-114 417.5 862 37.8
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 2.5e-114 417.5 838 39.5
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.7e-113 413.7 632 46.0
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 4.3e-106 390.2 887 36.5
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 4.1e-104 383.6 963 34.1
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 7.6e-103 379.4 472 50.4
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.1e-92 343.2 821 35.1
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 4.7e-84 317.0 520 38.7
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 2.0e-82 311.6 618 42.2
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.0e-82 311.6 423 49.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.1e-80 305.8 428 47.0
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 4.5e-79 300.4 1022 32.2
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 9.7e-74 282.7 923 30.6
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.4e-72 278.9 335 51.0
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 6.5e-70 270.0 422 46.4
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.4e-66 257.7 768 34.2
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 7.5e-66 256.5 371 43.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.2e-63 249.2 283 50.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.5e-61 242.3 729 30.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.0e-59 234.6 735 30.2
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.0e-55 221.9 796 32.3
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.3e-54 219.2 399 40.4
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.5e-53 214.9 353 46.2
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 9.2e-48 196.4 278 47.5
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-43 182.6 220 49.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.9e-40 172.2 281 44.8
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 1.7e-38 165.6 324 33.0
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.0e-38 164.9 536 34.1
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.5e-37 162.5 270 43.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 4.0e-35 154.5 118 60.2
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-33 149.4 268 38.4
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.0e-31 140.6 196 46.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.6e-28 132.5 264 43.2
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 6.2e-28 130.6 147 50.3
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 8.9e-27 126.7 111 63.1
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 5.4e-24 117.5 119 48.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.2e-16 91.3 89 58.4
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 5.4e-16 90.9 135 45.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 7.1e-16 90.5 93 65.6
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.7e-15 88.6 126 47.6
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.5e-15 88.2 249 29.3
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.8e-15 87.0 122 48.4
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-12 78.6 48 68.8
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.2e-12 77.4 150 33.3
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.1e-11 75.1 118 44.1
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 1.8e-06 59.3 82 37.8


User provided reference genes

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