Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.9e-265 916.8 466 100.0
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.7e-154 550.1 404 70.5
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.7e-136 489.6 433 59.1
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.9e-136 488.0 429 61.3
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.3e-134 482.6 445 58.2
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.6e-131 471.5 410 59.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.3e-130 470.7 422 58.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.9e-130 469.5 411 60.6
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.8e-130 469.2 422 57.6
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 4.2e-129 465.7 412 60.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 5.5e-129 465.3 419 58.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 9.3e-129 464.5 420 59.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.5e-126 456.4 452 54.0
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.7e-126 455.3 412 60.4
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-124 451.1 416 57.9
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.4e-124 450.7 424 57.3
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 4.1e-124 449.1 405 59.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 9.0e-124 448.0 411 59.6
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.2e-122 443.4 446 55.2
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.9e-122 443.0 410 58.0
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 6.5e-122 441.8 414 58.9
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.4e-121 440.7 418 58.1
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.2e-120 437.6 407 58.0
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.1e-120 436.8 412 57.3
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.3e-119 433.3 436 54.6
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 4.3e-118 429.1 409 55.3
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.8e-117 426.4 405 56.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 4.1e-116 422.5 403 57.3
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.4e-115 419.5 399 54.6
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.7e-114 417.2 402 56.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.7e-114 417.2 402 56.0
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 5.0e-114 415.6 428 52.8
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 8.5e-114 414.8 437 51.7
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.1e-113 414.5 408 54.2
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.4e-113 414.1 411 55.2
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.9e-113 413.7 452 52.2
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.5e-113 413.3 409 54.3
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 2.5e-113 413.3 402 55.7
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 9.4e-113 411.4 422 54.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.7e-112 409.8 405 56.5
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.7e-112 409.8 405 56.5
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.6e-112 409.5 421 53.4
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.7e-112 409.1 361 58.7
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.0e-111 407.9 414 53.4
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 1.4e-111 407.5 421 53.4
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.8e-111 407.1 403 54.3
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.3e-111 406.8 414 53.1
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 8.8e-111 404.8 462 50.2
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 3.3e-110 402.9 416 52.4
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.8e-109 399.1 411 54.3
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 8.2e-109 398.3 406 55.9
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 4.1e-108 396.0 454 49.1
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.9e-106 389.8 403 51.9
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.9e-106 389.8 405 54.6
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.1e-105 387.9 401 51.9
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.2e-105 386.0 411 53.5
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.2e-104 384.4 358 55.3
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.7e-104 383.3 432 49.8
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.4e-103 380.9 408 51.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 2.3e-103 380.2 406 52.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 4.0e-103 379.4 450 48.4
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.0e-103 379.4 412 51.9
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 5.2e-103 379.0 420 51.0
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 6.7e-103 378.6 447 49.2
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.0e-102 377.1 405 50.4
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 2.0e-102 377.1 405 51.6
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.0e-102 377.1 436 48.4
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 3.3e-102 376.3 429 49.7
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.4e-102 375.9 350 54.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.7e-102 374.8 455 48.6
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.1e-100 369.4 407 51.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.7e-99 365.2 418 49.3
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 6.5e-98 362.1 410 50.0
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 5.5e-97 359.0 401 48.4
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 5.5e-97 359.0 418 49.5
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 6.1e-96 355.5 410 51.2
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 8.0e-96 355.1 431 49.2
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 8.0e-96 355.1 408 48.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.2e-94 351.3 435 46.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 4.8e-93 345.9 465 44.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 4.5e-91 339.3 404 46.8
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.0e-90 338.2 406 48.3
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.7e-90 337.4 307 56.0
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.2e-90 337.0 406 48.3
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.5e-90 335.5 406 48.0
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.2e-86 324.7 240 66.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.2e-85 320.5 439 43.1
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 2.4e-84 317.0 410 45.4
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.9e-83 312.4 416 45.7
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 6.6e-82 308.9 399 44.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 3.3e-81 306.6 319 50.8
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 7.3e-81 305.4 400 41.2
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 8.0e-80 302.0 398 42.7
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 8.0e-80 302.0 393 43.0
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-79 300.8 395 43.3
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 6.8e-79 298.9 395 42.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.0e-78 297.4 395 42.5
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.0e-78 297.4 395 42.5
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 4.4e-78 296.2 409 40.6
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.9e-77 293.5 388 42.0
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.2e-75 288.1 404 38.9
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 4.7e-72 276.2 324 51.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 4.4e-70 269.6 292 52.7
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 4.6e-67 259.6 393 40.2
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.0e-66 258.5 391 39.4
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 3.3e-65 253.4 402 38.8
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.1e-63 248.4 402 39.1
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.4e-63 248.1 172 67.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.3e-63 247.3 268 52.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.2e-62 245.0 392 38.3
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.4e-60 237.3 240 57.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.4e-60 236.1 257 55.3
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.4e-52 211.5 284 40.8
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.3e-50 204.9 240 52.1
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 6.8e-47 192.6 312 37.8
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.9e-47 192.2 307 42.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.4e-45 186.0 255 40.0
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.2e-44 183.7 138 62.3
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 3.5e-43 180.3 241 47.3
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.6e-38 164.1 227 40.1
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.2e-36 157.1 281 33.1
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.2e-36 157.1 239 45.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 7.1e-36 156.0 330 32.1
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-35 154.8 281 32.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 3.0e-34 150.6 242 40.1
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.4e-33 146.0 89 71.9
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.4e-33 146.0 89 71.9
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 5.3e-31 139.8 292 34.6
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 7.6e-30 136.0 149 46.3
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-29 135.2 180 44.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 2.9e-29 134.0 275 31.6
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.9e-29 134.0 211 36.0
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.7e-24 117.1 149 51.0
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.2e-22 112.1 154 44.8
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.5e-22 110.2 320 26.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.9e-21 107.5 198 39.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-21 105.9 267 30.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 6.0e-19 99.8 323 27.9
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 6.7e-18 96.3 315 27.6
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 6.7e-18 96.3 315 27.6
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 6.7e-18 96.3 315 27.6
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.3e-17 94.0 298 26.8
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.3e-17 94.0 298 26.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-10 72.4 54 53.7


User provided reference genes

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